Manuel Garber
Active 2005–2025
- 56
- Papers
- 30,060
- Citations
- 48
- h-index
- 54
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology69.1%
- Medicine19.2%
- Immunology and Microbiology4.3%
- Agricultural and Biological Sciences3.4%
- Neuroscience1.6%
- Environmental Science0.5%
- Other1.9%
Topics
- Cancer-related molecular mechanisms research11.1%
- RNA modifications and cancer8.1%
- RNA Research and Splicing7%
- RNA and protein synthesis mechanisms3%
- Genomics and Chromatin Dynamics3%
- Genomics and Phylogenetic Studies2.9%
- Other64.9%
Coauthors
- Mitchell Guttman14
- Alper Küçükural11
- Aviv Regev10
- Eric S. Lander8
- Elisa Donnard7
- John L. Rinn7
- Ido Amit6
- Jean L. Chang6
- Patrick McDonel6
- April Cook5
- B Bernstein5
- Chad Nusbaum5
- Michael C. Zody5
- Or Zuk5
- Pranitha Vangala5
- Alan Derr4
- Andreas Gnirke4
- Christina A. Cuomo4
- David DeCaprio4
- Jonathan A. Butler4
- Ken Dewar4
- Kyle Gellatly4
- Mark L. Borowsky4
- Michael G. FitzGerald4
All papers
- SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Authors: Carly G.K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, Ian Mbano, Vincent N. Miao, Constantine N. Tzouanas, Yuming Cao, Ashraf S. Yousif, Julia Bals, Blake M. Hauser, Jared Feldman, Christoph Muus, Marc H. Wadsworth, Samuel W. Kazer, Travis K. Hughes, Benjamin A. Doran, G. James Gatter, Marko Vukovic, Faith Taliaferro, Benjamin E. Mead, Zhiru Guo, Jennifer Wang, Delphine Gras, Magali Plaisant, Meshal Ansari, Ilias Angelidis, Heiko Adler, Jennifer M. S. Sucre, Chase J. Taylor, Brian Lin, Avinash Waghray, Vanessa Mitsialis, Daniel F. Dwyer, Kathleen M. Buchheit, Joshua A. Boyce, Nora A. Barrett, Tanya M. Laidlaw, Shaina L. Carroll, Lucrezia Colonna, Victor Tkachev, Christopher W. Peterson, Alison Yu, Hengqi Zheng, Hannah P. Gideon, Caylin G. Winchell, Philana Ling Lin, Colin D. Bingle, Scott B. Snapper, Jonathan A. Kropski, Fabian J. Theis, Herbert B. Schiller, Laure‐Emmanuelle Zaragosi, Pascal Barbry, Alasdair Leslie, Hans‐Peter Kiem, JoAnne L. Flynn, Sarah M. Fortune, Bonnie Berger, Robert W. Finberg, Leslie S. Kean, Manuel Garber, Aaron G. Schmidt, Daniel Lingwood, Alex K. Shalek, José Ordovás-Montañés, Nicholas E. Banovich, Pascal Barbry, Alvis Brāzma, Tushar Desai, Thu Elizabeth Duong, Oliver Eickelberg, Christine S. Falk, Michael Farzan, Ian A. Glass, Muzlifah Haniffa, Péter Horváth, Deborah Hung, Naftali Kaminski, Mark A. Krasnow, Jonathan A. Kropski, Malte Kühnemund, Robert Lafyatis, Haeock Lee, Sylvie Leroy, Sten Linnarson, Joakim Lundeberg, Kerstin Meyer, Alexander Misharin, Martijn C. Nawijn, Marko Nikolić, José Ordovás-Montañés, Dana Pe’er, Joseph E. Powell, Stephen R. Quake, Jayaraj Rajagopal, Purushothama Rao Tata, Emma L. Rawlins, Aviv Regev, Paul A. Reyfman, Mauricio Rojas and 21 more - Cell 2020 cited by 2,494
- Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
Authors: Sofia A. Quinodoz, Noah Ollikainen, Barbara Tabak, Ali Palla, J.M. Schmidt, Elizabeth Detmar, Mason Lai, A.A. Shishkin, Prashant Bhat, Yodai Takei, Vickie Trinh, Erik Aznauryan, Pamela Russell, Christine S. Cheng, Marko Jovanović, Amy Chow, Long Cai, Patrick McDonel, Manuel Garber, Mitchell Guttman - Cell 2018 cited by 966
- Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals
Authors: Upasna Sharma, Colin C. Conine, Jeremy M. Shea, Ana Bošković, Alan Derr, Xinyang Bing, Clémence Belleannée, Alper Küçükural, Ryan W. Serra, Fengyun Sun, Lina Song, Benjamin R. Carone, Emiliano P. Ricci, Xin Z. Li, Lucas Fauquier, Melissa J. Moore, Robert Sullivan, Craig C. Mello, Manuel Garber, Oliver J. Rando - Science 2015 cited by 1,343
- Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
Authors: Mitchell Guttman, Ido Amit, Manuel Garber, Courtney E. French, Michael F. Lin, David M. Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, B Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander - Nature 2009 cited by 4,206
- A comparative genomics multitool for scientific discovery and conservation
Authors: Diane P. Genereux, Aitor Serres, Joel Armstrong, Jeremy Johnson, Voichita D. Marinescu, Eva Murén, David Juan, Gill Bejerano, Nicholas R. Casewell, Leona G. Chemnick, Joana Damas, Federica Di Palma, Mark Diekhans, Ian T. Fiddes, Manuel Garber, Vadim N. Gladyshev, Linda Goodman, Wilfried Haerty, Marlys L. Houck, Robert Hubley, Teemu Kivioja, Klaus-Peter Koepfli, Lukas F. K. Kuderna, Eric S. Lander, Jennifer R. S. Meadows, William J. Murphy, Will Nash, Hyun Ji Noh, Martin Nweeia, Andreas R. Pfenning, Katherine S. Pollard, David A. Ray, Beth Shapiro, Arian F. A. Smit, Mark S. Springer, Cynthia C. Steiner, Ross Swofford, Jussi Taipale, Emma C. Teeling, Jason Turner-Maier, Jessica Alfoldi, Bruce Birren, Oliver A. Ryder, Harris A. Lewin, Benedict Paten, Tomas Marques-Bonet, Kerstin Lindblad-Toh, Elinor K. Karlsson - Nature 2020 cited by 444
- Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
Authors: Ahmad M. Khalil, Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, B Bernstein, Alexander van Oudenaarden, Aviv Regev, Eric S. Lander, John L. Rinn - National Academy of Sciences, Proceedings of the National Academy of Sciences 2009 cited by 2,866
- A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response
Authors: Maite Huarte, Mitchell Guttman, David M. Feldser, Manuel Garber, Magdalena J. Koziol, Daniela Kenzelmann-Broz, Ahmad M. Khalil, Or Zuk, Ido Amit, Michal Rabani, Laura D. Attardi, Aviv Regev, Eric S. Lander, Tyler Jacks, John L. Rinn - Cell 2010 cited by 2,099
- Functional annotation of native enhancers with a Cas9–histone demethylase fusion
Authors: Nicola A. Kearns, Hannah Pham, Barbara Tabak, Ryan M. Genga, Noah J. Silverstein, Manuel Garber, René Maehr - Nature Methods 2015 cited by 651
- A high-resolution map of human evolutionary constraint using 29 mammals
Authors: Kerstin Lindblad‐Toh, Manuel Garber, Or Zuk, Michael F. Lin, Brian J. Parker, Stefan Washietl, Pouya Kheradpour, Jason Ernst, Gregory E. Jordan, Evan Mauceli, Lucas D. Ward, Craig B. Lowe, Alisha K. Holloway, Michèle Clamp, Sante Gnerre, Jessica Alföldi, Kathryn Beal, Jean L. Chang, Hiram Clawson, James Cuff, Federica Di Palma, Stephen Fitzgerald, Paul Flicek, Mitchell Guttman, Melissa J. Hubisz, David B. Jaffe, Irwin Jungreis, W. James Kent, Dennis Kostka, Marcia Lara, André L. Martins, Tim Massingham, Ida Moltke, Brian J. Raney, Matthew D. Rasmussen, Jim Robinson, Alexander Stark, Albert J. Vilella, Jiayu Wen, Xiaohui Xie, Michael C. Zody, Kim C. Worley, Christie Kovar, Donna M. Muzny, Richard A. Gibbs, Wesley C. Warren, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Ewan Birney, Elliott H. Margulies, Javier Herrero, Eric D. Green, David Haussler, Adam Siepel, Nick Goldman, Katherine S. Pollard, Jakob Skou Pedersen, Eric S. Lander, Manolis Kellis - Nature 2011 cited by 1,228
- scRNA-seq of human vitiligo reveals complex networks of subclinical immune activation and a role for CCR5 in T reg function
Authors: Kyle Gellatly, James P. Strassner, Kingsley I. Essien, Maggi Ahmed Refat, Rachel L. Murphy, A. Coffin-Schmitt, Amit G. Pandya, Andrea Tovar‐Garza, Michael L. Frisoli, Xueli Fan, Xiaolan Ding, E. Kim, Zainab Abbas, Patrick McDonel, Manuel Garber, John E. Harris - Science Translational Medicine 2021 cited by 143
- lincRNAs act in the circuitry controlling pluripotency and differentiation
Authors: Mitchell Guttman, Julie Donaghey, Bryce W. Carey, Manuel Garber, Jennifer K. Grenier, Glen Munson, Geneva Young, Anne Bergstrom Lucas, Robert A. Ach, Laurakay Bruhn, Xiaoping Yang, Ido Amit, Alexander Meissner, Aviv Regev, John L. Rinn, David E. Root, Eric S. Lander - Nature 2011 cited by 1,907
- HLA Class II Antigen Processing and Presentation Pathway Components Demonstrated by Transcriptome and Protein Analyses of Islet β-Cells From Donors With Type 1 Diabetes
Authors: Mark A. Russell, Sambra D. Redick, David M. Blodgett, Sarah J. Richardson, Pia Leete, Lars Krogvold, Knut Dahl‐Jørgensen, Rita Bottino, Marcela Briššová, Jason M. Spaeth, Jenny Aurielle B. Babon, Rachana Haliyur, Alvin C. Powers, Chaoxing Yang, Sally C. Kent, Alan Derr, Alper Küçükural, Manuel Garber, Noel G. Morgan, David M. Harlan - Diabetes 2019 cited by 144
- Simultaneous generation of many RNA-seq libraries in a single reaction
Authors: A.A. Shishkin, Georgia Giannoukos, Alper Küçükural, Dawn Ciulla, Michele Busby, Christine Surka, Jenny Chen, Roby P. Bhattacharyya, Robert F. Rudy, Milesh M. Patel, Nathaniel Novod, Deborah T. Hung, Andreas Gnirke, Manuel Garber, Mitchell Guttman, Jonathan Livny - Nature Methods 2015 cited by 322
- DEBrowser: interactive differential expression analysis and visualization tool for count data
Authors: Alper Küçükural, Onur Yukselen, Deniz M. Özata, Melissa J. Moore, Manuel Garber - BMC Genomics 2019 cited by 268
- Spatial transcriptomic reconstruction of the mouse olfactory glomerular map suggests principles of odor processing
Authors: I‐Hao Wang, Evan Murray, Greg Andrews, Hao-Ching Jiang, Sung Jin Park, Elisa Donnard, Violeta Durán‐Laforet, Daniel M. Bear, Travis E. Faust, Manuel Garber, Christina E. Baer, Dorothy P. Schafer, Zhiping Weng, Fei Chen, Evan Z. Macosko, Paul L. Greer - Nature Neuroscience 2022 cited by 77
- Simultaneous profiling of multiple chromatin proteins in the same cells
Authors: Sneha Gopalan, Yuqing Wang, Nicholas W. Harper, Manuel Garber, Thomas G. Fazzio - Molecular Cell 2021 cited by 122
- Computational methods for transcriptome annotation and quantification using RNA-seq
Authors: Manuel Garber, Manfred Grabherr, Mitchell Guttman, Cole Trapnell - Nature Methods 2011 cited by 1,062
- Novel Observations From Next-Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets
Authors: David M. Blodgett, Anetta Nowosielska, Shaked Afik, Susanne Pechhold, Anthony J. Cura, Norman J. Kennedy, Soyoung Kim, Alper Küçükural, Roger J. Davis, Sally C. Kent, Dale L. Greiner, Manuel Garber, David M. Harlan, Philip diIorio - Diabetes 2015 cited by 330
- Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses
Authors: Ido Amit, Manuel Garber, Nicolas Chevrier, Ana Paula Leite, Yoni Donner, Thomas Eisenhaure, Mitchell Guttman, Jennifer K. Grenier, Weibo Li, Or Zuk, Lisa Schubert, Brian Birditt, Tal Shay, Alon Goren, Xiaolan Zhang, Zachary D. Smith, Raquel P. Deering, Rebecca C. McDonald, Moran N. Cabili, B Bernstein, John L. Rinn, Alex Meissner, David E. Root, Nir Hacohen, Aviv Regev - Science 2009 cited by 495
- Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
Authors: Stefan Washietl, Manolis Kellis, Manuel Garber - Genome Research 2014 cited by 376
- Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation
Authors: Hsin-Jung Chou, Elisa Donnard, Helena Gustafsson, Manuel Garber, Oliver J. Rando - Molecular Cell 2017 cited by 161
- Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells
Authors: So Yun Min, Anand Desai, Zinger Yang, Agastya Sharma, Tiffany DeSouza, Ryan M. Genga, Alper Küçükural, Lawrence M. Lifshitz, Søren Nielsen, Camilla Schéele, René Maehr, Manuel Garber, Silvia Corvera - National Academy of Sciences, Proceedings of the National Academy of Sciences 2019 cited by 151
- Identifying novel constrained elements by exploiting biased substitution patterns
Authors: Manuel Garber, Mitchell Guttman, Michele E. Clamp, Michael C. Zody, Nir Friedman, Xiaohui Xie - Bioinformatics, Bioinform. 2009 cited by 394
- The PPARα-FGF21 Hormone Axis Contributes to Metabolic Regulation by the Hepatic JNK Signaling Pathway
Authors: Santiago Vernia, Julie Cavanagh-Kyros, Luisa García-Haro, Guadalupe Sabio, Tamera Barrett, Dae Young Jung, Jason K. Kim, Jia Xu, Hennady P. Shulha, Manuel Garber, Guangping Gao, Roger J. Davis - Cell Metabolism 2014 cited by 195
