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Xiaohui Xie

Active 1994–2026

309
Papers
48,883
Citations
86
h-index
213
i10-index

Citations

Citations per year for Xiaohui Xie1983: 1 citations1988: 1 citations1992: 4 citations1994: 3 citations1995: 4 citations1996: 11 citations1997: 29 citations1998: 33 citations1999: 56 citations2000: 51 citations2001: 49 citations2002: 58 citations2003: 86 citations2004: 91 citations2005: 204 citations2006: 328 citations2007: 478 citations2008: 688 citations2009: 680 citations2010: 781 citations2011: 732 citations2012: 666 citations2013: 712 citations2014: 636 citations2015: 625 citations2016: 585 citations2017: 603 citations2018: 660 citations2019: 1,539 citations2020: 1,442 citations2021: 1,590 citations2022: 1,348 citations2023: 1,193 citations2024: 1,415 citations2025: 833 citations2026: 160 citations1984–1987: no citations, so these years are not shown1989–1991: no citations, so these years are not shown1993: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 7,245 citing papers, 28.4% of this breakdownChina: 3,782 citing papers, 14.8% of this breakdownUnited Kingdom: 1,760 citing papers, 6.9% of this breakdownGermany: 1,236 citing papers, 4.8% of this breakdownCanada: 835 citing papers, 3.3% of this breakdownFrance: 802 citing papers, 3.2% of this breakdownAustralia: 698 citing papers, 2.7% of this breakdownJapan: 646 citing papers, 2.5% of this breakdownItaly: 637 citing papers, 2.5% of this breakdownNetherlands: 615 citing papers, 2.4% of this breakdownSpain: 545 citing papers, 2.1% of this breakdownSwitzerland: 504 citing papers, 2% of this breakdown
0%28.4%Other 24.4%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology55.2%
  • Computer Science13.7%
  • Medicine10.9%
  • Agricultural and Biological Sciences4.3%
  • Engineering3.9%
  • Neuroscience3%
  • Other9%

Topics

  • Genomics and Chromatin Dynamics4.9%
  • Epigenetics and DNA Methylation4.7%
  • Genomics and Phylogenetic Studies2.9%
  • RNA modifications and cancer2.5%
  • RNA Research and Splicing2.3%
  • RNA and protein synthesis mechanisms2%
  • Other80.7%

Coauthors

All papers

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  1. A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells

    Authors: B Bernstein, Tarjei S. Mikkelsen, Xiaohui Xie, Michael Kamal, Dana J. Huebert, James Cuff, Ben Fry, Alex Meissner, Marius Wernig, Kathrin Plath, Rudolf Jaenisch, Alexandre Wagschal, Robert Feil, Stuart L. Schreiber, Eric S. Lander - Cell 2006 cited by 5,469

  2. Identifying viruses from metagenomic data using deep learning

    Authors: Jie Ren, Kai Song, Chao Deng, Nathan A. Ahlgren, Jed A. Fuhrman, Yi Li, Xiaohui Xie, Ryan Poplin, Fengzhu Sun - Quantitative Biology, Quant. Biol. 2020 cited by 682

  3. DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences

    Authors: Daniel Quang, Xiaohui Xie - Nucleic Acids Research 2016 cited by 943

  4. Proceedings of the Eleventh ACM International Conference on Web Search and Data Mining, WSDM 2018, Marina Del Rey, CA, USA, February 5-9, 2018

    Authors: Yan Liu, Jimmy Xiangji Huang, Local Chair, Roger Luo, Evgeniy Chairs, Rong Gabrilovich, David Carmel, Jaap Kamps, Shou-De Chairs, Xing Lin, Qi Yu, Jianhui Chen, Yi Wsdm', ChengXiang Zhai, Yi Wsdm', Zhai Chengxiang, Wsdm', Zhuyun Dai, Chenyan Xiong, Jamie Callan, ;, Zhiyuan Liu, Ido Guy, Parisa Kaghazgaran, James Caverlee, ;, Anna Squicciarini, Yao Ma, ;, J Com, Kien Pham, Acio Santos, Juliana Freire, Jiezhong Qiu, ;, Yuxiao Dong, Hao Ma, ; Jie Tang, Hongwei Wang, ( Shanghai, Jiao Tong University, &, Zihan Wang, Ziheng Jiang, Zhaochun Ren, Xiaohui Xie, Yiqun Liu, ;, Min Zhang, Shaoping Ma, Qian Yu, Wai Lam, Xian Zhou, Yanyan Shen, Yanmin Zhu, Linpeng Huang, ( Shanghai, Jiao Tong, University, Sutanay Choudhury, Sumit Purohit, ), Peng Lin, Yinghui Wu, Lawrence Holder, Xiang Ren, Craig Knoblock, ; California, ), William Wang, Yu Su, ;, Santa Barbara, Rishabh Mehrotra, ; Ahmed, Hassan Awadallah, Mihajlo Grbovic, Thanasis Noulas (airbnb, Inc, Jiejun Xu, ( Hrl Laboratories, ) Llc, Hanghang Tong, ), Tsai-Ching Lu, (hrl Laboratories, ) Llc, Jingrui He, Chengxiang Zhai, Yan Liu, Hui Fang - WSDM 2018 cited by 354

  5. Genome-wide detection and characterization of positive selection in human populations

    Authors: Pardis C. Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H. Byrne, Steven A. McCarroll, Rachelle Gaudet, S. F. Schaffner, Eric S. Lander - Nature 2007 cited by 2,294

  6. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

    Authors: Tarjei S. Mikkelsen, Manching Ku, David B. Jaffe, Biju Issac, E. James Lieberman, Georgia Giannoukos, Pablo Álvarez, William W. Brockman, Tae-Kyung Kim, Richard P. Koche, William Lee, Eric M. Mendenhall, Aisling O’Donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S. Lander, B Bernstein - Nature 2007 cited by 4,205

  7. DANN: a deep learning approach for annotating the pathogenicity of genetic variants

    Authors: Daniel Quang, Yifei Chen, Xiaohui Xie - Bioinformatics, Bioinform. 2014 cited by 1,119

  8. AFTer-UNet: Axial Fusion Transformer UNet for Medical Image Segmentation

    Authors: Xiangyi Yan, Hao Tang, Shanlin Sun, Haoyu Ma, Deying Kong, Xiaohui Xie - IEEE/CVF Winter Conference on Applications of Computer Vision (WACV) 2022 cited by 159

  9. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

    Authors: Li‐Jun Ma, H. Charlotte van der Does, Katherine A. Borkovich, Jeffrey J. Coleman, Marie‐Josée Daboussi, Antonio Di Pietro, Marie Dufresne, Michael Freitag, Manfred Grabherr, Bernard Henrissat, Petra M. Houterman, Seogchan Kang, Won‐Bo Shim, Charles P. Woloshuk, Xiaohui Xie, Jin‐Rong Xu, J. F. Antoniw, Scott Baker, Burton H. Bluhm, Andrew Breakspear, Daren W. Brown, Robert A. E. Butchko, Sinéad B. Chapman, Richard Coulson, Pedro M. Coutinho, Étienne Danchin, Andrew C. Diener, Liane Rosewich Gale, Donald M. Gardiner, Stephen A. Goff, K. E. Hammond‐Kosack, Karen Hilburn, Aurélie Hua‐Van, Wilfried Jonkers, Kemal Kazan, Chinnappa D. Kodira, Michael Koehrsen, Lokesh Kumar, Yong‐Hwan Lee, Liande Li, John M. Manners, Diego Miranda‐Saavedra, Mala Mukherjee, Gyungsoon Park, Jongsun Park, Sook-Young Park, Robert H. Proctor, Aviv Regev, Carmen Ruiz‐Roldán, Divya Sain, Sharadha Sakthikumar, Sean M. Sykes, David C. Schwartz, B. Gillian Turgeon, Ilan Wapinski, O. C. Yoder, Sarah Young, Qiandong Zeng, Shiguo Zhou, James E. Galagan, Christina A. Cuomo, Harold Kistler, Martijn Rep - Nature 2010 cited by 1,857

  10. Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell

    Authors: Chenghang Zong, Sijia Lü, Alec R. Chapman, Xiaohui Xie - Science 2012 cited by 1,222

  11. Recurrent Mask Refinement for Few-Shot Medical Image Segmentation

    Authors: Hao Tang, Xingwei Liu, Shanlin Sun, Xiangyi Yan, Xiaohui Xie - IEEE/CVF International Conference on Computer Vision (ICCV) 2021 cited by 138

  12. Three-dimensional genome structures of single diploid human cells

    Authors: Longzhi Tan, Dong Xing, Chi-Han Chang, Heng Li, Xiaohui Xie - Science 2018 cited by 549

  13. AnatomyNet: Deep learning for fast and fully automated whole‐volume segmentation of head and neck anatomy

    Authors: Wentao Zhu, Yufang Huang, Liang Zeng, Xuming Chen, Yong Liu, Zhen Qian, Nan Du, Wei Fan, Xiaohui Xie - Medical Physics 2018 cited by 526

  14. VTNFP: An Image-Based Virtual Try-On Network With Body and Clothing Feature Preservation

    Authors: Ruiyun Yu, Xiaoqi Wang, Xiaohui Xie - IEEE/CVF International Conference on Computer Vision (ICCV) 2019 cited by 177

  15. Clinically applicable deep learning framework for organs at risk delineation in CT images

    Authors: Hao Tang, Xuming Chen, Yang Liu, Zhipeng Lu, Junhua You, Mingzhou Yang, Shengyu Yao, Guoqi Zhao, Yi Xu, Tingfeng Chen, Yong Liu, Xiaohui Xie, Yong Liu, Xiaohui Xie - Nature Machine Intelligence, Nat. Mach. Intell. 2019 cited by 187

  16. Genome sequence, comparative analysis and haplotype structure of the domestic dog

    Authors: Broad Sequencing Platform members, Kerstin Lindblad‐Toh, Claire M. Wade, Tarjei S. Mikkelsen, Elinor K. Karlsson, David B. Jaffe, Michael Kamal, Michèle Clamp, Jean L. Chang, Edward J. Kulbokas, Michael C. Zody, Evan Mauceli, Xiaohui Xie, Matthew Breen, Robert K. Wayne, Elaine A. Ostrander, Chris P. Ponting, Francis Galibert, Douglas R. Smith, Pieter DeJong, Ewen F. Kirkness, Pablo Álvarez, Tara Biagi, William W. Brockman, Jonathan A. Butler, Chee-Wye Chin, April Cook, James Cuff, Mark J. Daly, David DeCaprio, Sante Gnerre, Manfred Grabherr, Manolis Kellis, Michael Kleber, Carolyne Bardeleben, Leo Goodstadt, Andreas Heger, Christophe Hitte, Lisa Kim, Klaus‐Peter Koepfli, Heidi G. Parker, John P. Pollinger, Stephen M. J. Searle, Nathan B. Sutter, Rachael Thomas, Caleb Webber, Eric S. Lander - Nature 2005 cited by 2,639

  17. A deep learning-based auto-segmentation system for organs-at-risk on whole-body computed tomography images for radiation therapy

    Authors: Xuming Chen, Shanlin Sun, Narisu Bai, Kun Han, Qianqian Liu, Shengyu Yao, Hao Tang, Chupeng Zhang, Zhipeng Lu, Qian Huang, Guoqi Zhao, Yi Xu, Tingfeng Chen, Xiaohui Xie, Yong Liu - Radiotherapy and Oncology 2021 cited by 162

  18. Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)

    Authors: Chongyi Chen, Dong Xing, Longzhi Tan, Heng Li, Guangyu Zhou, Lei Huang, Xiaohui Xie - Science 2017 cited by 425

  19. EI-CLIP: Entity-aware Interventional Contrastive Learning for E-commerce Cross-modal Retrieval

    Authors: Haoyu Ma, Handong Zhao, Zhe Lin, Ajinkya Kale, Zhangyang Wang, Tong Yu, Jiuxiang Gu, Sunav Choudhary, Xiaohui Xie - IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) 2022 cited by 58

  20. ShieldGPT: An LLM-based Framework for DDoS Mitigation

    Authors: Tongze Wang, Xiaohui Xie, Lei Zhang, Chuyi Wang, Liang Zhang, Yong Cui - Asia-Pacific Workshop on Networking, APNet 2024 cited by 41

  21. Gene expression inference with deep learning

    Authors: Yifei Chen, Yi Li, Rajiv Narayan, Aravind Subramanian, Xiaohui Xie - Bioinformatics, Bioinform. 2015 cited by 452

  22. NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation

    Authors: Hao Tang, Chupeng Zhang, Xiaohui Xie - Lecture notes in computer science, MICCAI (6) 2019 cited by 129

  23. A high-resolution map of human evolutionary constraint using 29 mammals

    Authors: Kerstin Lindblad‐Toh, Manuel Garber, Or Zuk, Michael F. Lin, Brian J. Parker, Stefan Washietl, Pouya Kheradpour, Jason Ernst, Gregory E. Jordan, Evan Mauceli, Lucas D. Ward, Craig B. Lowe, Alisha K. Holloway, Michèle Clamp, Sante Gnerre, Jessica Alföldi, Kathryn Beal, Jean L. Chang, Hiram Clawson, James Cuff, Federica Di Palma, Stephen Fitzgerald, Paul Flicek, Mitchell Guttman, Melissa J. Hubisz, David B. Jaffe, Irwin Jungreis, W. James Kent, Dennis Kostka, Marcia Lara, André L. Martins, Tim Massingham, Ida Moltke, Brian J. Raney, Matthew D. Rasmussen, Jim Robinson, Alexander Stark, Albert J. Vilella, Jiayu Wen, Xiaohui Xie, Michael C. Zody, Kim C. Worley, Christie Kovar, Donna M. Muzny, Richard A. Gibbs, Wesley C. Warren, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Ewan Birney, Elliott H. Margulies, Javier Herrero, Eric D. Green, David Haussler, Adam Siepel, Nick Goldman, Katherine S. Pollard, Jakob Skou Pedersen, Eric S. Lander, Manolis Kellis - Nature 2011 cited by 1,228

  24. Integrated analysis of multimodal single-cell data with structural similarity

    Authors: Yingxin Cao, Laiyi Fu, Jie Wu, Qinke Peng, Qing Nie, Jing Zhang, Xiaohui Xie - Nucleic Acids Research 2022 cited by 107