Ziheng Yang
Active 1993–2026
- 180
- Papers
- 53,777
- Citations
- 98
- h-index
- 155
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology52.9%
- Agricultural and Biological Sciences15.2%
- Environmental Science7.3%
- Medicine6.7%
- Earth and Planetary Sciences6.6%
- Immunology and Microbiology3.6%
- Other7.7%
Topics
- Genomics and Phylogenetic Studies13.4%
- Genetic diversity and population structure9.7%
- Evolution and Paleontology Studies4.1%
- Evolution and Genetic Dynamics2.5%
- Plant and animal studies2.1%
- RNA and protein synthesis mechanisms2.1%
- Other66.1%
Coauthors
- Bruce Rannala27
- Tomáš Flouri18
- Mario dos Reis15
- Philip C. J. Donoghue12
- Tianqi Zhu12
- Rasmus Nielsen11
- Joseph P. Bielawski10
- Anne D. Yoder9
- Xiyun Jiao9
- Jun Huang7
- Adam D. Leaché6
- Yuttapong Thawornwattana5
- Maximilian J. Telford4
- Nick Goldman4
- Paschalia Kapli4
- Sandra Álvarez-Carretero4
- Yue Gao4
- Féryal Windal3
- Halim Benhabiles3
- James Mallet3
- Jelmer W. Poelstra3
- John P. Huelsenbeck3
- Jun Inoue3
- Katherine A. Dunn3
All papers
- Phylogenetic tree building in the genomic age
Authors: Paschalia Kapli, Ziheng Yang, Maximilian J. Telford - Nature Reviews Genetics 2020 cited by 576
- Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
Authors: Ziheng Yang - Journal of Molecular Evolution 1994 cited by 3,116
- The timescale of early land plant evolution
Authors: Jennifer L. Morris, Mark N. Puttick, James Clark, Dianne Edwards, Paul Kenrick, Silvia Pressel, Charles H. Wellman, Ziheng Yang, Harald Schneider, Philip C. J. Donoghue - National Academy of Sciences, Proceedings of the National Academy of Sciences 2018 cited by 958
- Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models
Authors: Ziheng Yang, Rasmus Nielsen - Molecular Biology and Evolution 2000 cited by 1,805
- Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
Authors: Ziheng Yang - Molecular Biology and Evolution 2005 cited by 2,425
- The nature of the last universal common ancestor and its impact on the early Earth system
Authors: Edmund R. R. Moody, Sandra Álvarez-Carretero, Tara Mahendrarajah, James Clark, Holly C. Betts, Nina Dombrowski, Lénárd L. Szánthó, Richard A. Boyle, Stuart J. Daines, Xi Chen, Nick Lane, Ziheng Yang, Graham Shields, Gergely J. Szöllősi, Anja Spang, Davide Pisani, Tom A. Williams, Timothy M. Lenton, Philip C. J. Donoghue - Nature Ecology & Evolution 2024 cited by 229
- Probability Distribution of Molecular Evolutionary Trees: A New Method of Phylogenetic Inference
Authors: Bruce Rannala, Ziheng Yang - Journal of Molecular Evolution 1996 cited by 1,669
- Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent
Authors: Tomáš Flouri, Xiyun Jiao, Bruce Rannala, Ziheng Yang - Molecular Biology and Evolution 2018 cited by 461
- Beginner's Guide on the Use of PAML to Detect Positive Selection
Authors: Sandra Álvarez-Carretero, Paschalia Kapli, Ziheng Yang - Molecular Biology and Evolution 2023 cited by 221
- Versatile self-assembled MXene-Au nanocomposites for SERS detection of bacteria, antibacterial and photothermal sterilization
Authors: Zizhen Yu, Li Jiang, Rongyang Liu, Weidan Zhao, Ziheng Yang, Jinyao Zhang, Shangzhong Jin - Chemical Engineering Journal 2021 cited by 200
- A species-level timeline of mammal evolution integrating phylogenomic data
Authors: Sandra Álvarez-Carretero, Asif U. Tamuri, Matteo Battini, Fabrícia F. Nascimento, Emily Carlisle, Robert J. Asher, Ziheng Yang, Philip C. J. Donoghue, Mario dos Reis - Nature 2021 cited by 234
- Codon-Substitution Models for Detecting Molecular Adaptation at Individual Sites Along Specific Lineages
Authors: Ziheng Yang, Rasmus Nielsen - Molecular Biology and Evolution 2002 cited by 1,434
- Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
Authors: Bruce Rannala, Ziheng Yang - Genetics 2003 cited by 1,195
- The BPP program for species tree estimation and species delimitation
Authors: Ziheng Yang - Current Zoology 2015 cited by 790
- Bayesian Estimation of Species Divergence Times Under a Molecular Clock Using Multiple Fossil Calibrations with Soft Bounds
Authors: Ziheng Yang, Bruce Rannala - Molecular Biology and Evolution 2005 cited by 936
- Molecular phylogenetics: principles and practice
Authors: Ziheng Yang, Bruce Rannala - Nature Reviews Genetics 2012 cited by 791
- Best Practices for Justifying Fossil Calibrations
Authors: James F. Parham, Philip C. J. Donoghue, Christopher J. Bell, Tyler Calway, Jason J. Head, Patricia A. Holroyd, Jun Inoue, Randall B. Irmis, Walter G. Joyce, Daniel T. Ksepka, José Salvatore Leister Patané, Nathan D. Smith, James E. Tarver, Marcel van Tuinen, Ziheng Yang, Kenneth D. Angielczyk, Jenny M. Greenwood, Christy A. Hipsley, Louis L. Jacobs, Peter J. Makovicky, Johannes Müller, Krister T. Smith, Jessica M. Theodor, Rachel C. M. Warnock, Michael J. Benton - Systematic Biology 2011 cited by 788
- Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales
Authors: Mario dos Reis, Yuttapong Thawornwattana, Konstantinos Angelis, Maximilian J. Telford, Philip C. J. Donoghue, Ziheng Yang - Current Biology 2015 cited by 499
- INDELible: A Flexible Simulator of Biological Sequence Evolution
Authors: William A. Fletcher, Ziheng Yang - Molecular Biology and Evolution 2009 cited by 484
- Statistical methods for detecting molecular adaptation
Authors: Ziheng Yang, Joseph P. Bielawski - Trends in Ecology & Evolution 2000 cited by 1,860
- A space-time process model for the evolution of DNA sequences.
Authors: Ziheng Yang - Genetics 1995 cited by 453
- A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis
Authors: Tomáš Flouri, Xiyun Jiao, Bruce Rannala, Ziheng Yang - Molecular Biology and Evolution 2019 cited by 188
- The Spectre of Too Many Species
Authors: Adam D. Leaché, Tianqi Zhu, Bruce Rannala, Ziheng Yang - Systematic Biology 2018 cited by 291
- Inferring Speciation Times under an Episodic Molecular Clock
Authors: Bruce Rannala, Ziheng Yang - Systematic Biology 2007 cited by 495
