Matthieu Muffato

Active 2010–2024

40
Papers
25,457
Citations
34
h-index
36
i10-index

Citations

Citations per year for Matthieu Muffato1986: 1 citations1987: 1 citations1988: 1 citations1990: 1 citations1997: 1 citations1999: 1 citations2000: 1 citations2001: 2 citations2002: 2 citations2003: 2 citations2004: 2 citations2005: 2 citations2006: 1 citations2007: 2 citations2009: 5 citations2011: 20 citations2012: 92 citations2013: 237 citations2014: 342 citations2015: 389 citations2016: 395 citations2017: 376 citations2018: 407 citations2019: 1,194 citations2020: 1,231 citations2021: 1,250 citations2022: 1,018 citations2023: 696 citations2024: 894 citations2025: 326 citations2026: 13 citations1989: no citations, so this year is not shown1991–1996: no citations, so these years are not shown1998: no citations, so this year is not shown2008: no citations, so this year is not shown2010: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,584 citing papers, 21.8% of this breakdownUnited Kingdom: 1,648 citing papers, 10% of this breakdownChina: 1,292 citing papers, 7.9% of this breakdownGermany: 1,236 citing papers, 7.5% of this breakdownCanada: 628 citing papers, 3.8% of this breakdownFrance: 592 citing papers, 3.6% of this breakdownSpain: 555 citing papers, 3.4% of this breakdownAustralia: 475 citing papers, 2.9% of this breakdownSwitzerland: 435 citing papers, 2.6% of this breakdownItaly: 435 citing papers, 2.6% of this breakdownNetherlands: 427 citing papers, 2.6% of this breakdownSweden: 398 citing papers, 2.4% of this breakdown
0%21.8%Other 28.9%

Fields

  • Biochemistry, Genetics and Molecular Biology65.7%
  • Medicine13.5%
  • Agricultural and Biological Sciences5.5%
  • Immunology and Microbiology4.2%
  • Neuroscience3.3%
  • Environmental Science2.7%
  • Other5.1%

Topics

  • Genomics and Phylogenetic Studies6%
  • RNA modifications and cancer3.3%
  • Zebrafish Biomedical Research Applications3.1%
  • RNA and protein synthesis mechanisms3.1%
  • RNA Research and Splicing3%
  • Cancer-related molecular mechanisms research2.5%
  • Other79%

Coauthors

All papers

Open in search
  1. Ensembl 2022

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Matthew P. Hardy, Zoe Hollis, Thibaut Hourlier, Toby Hunt, Thomas Juettemann, Vinay Kaikala, Mike Kay, Ilias Lavidas, Anh Tuấn Lê, Diana Lemos, José Carlos Marugán, Shamika Mohanan, Aleena Mushtaq, Marc Naven, Denye Ogeh, Anne Parker, Andrew Parton, Malcolm Perry, Ivana Piližota, Irina Prosovetskaia, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M. Schmitt, Helen Schuilenburg, Dan Sheppard, José G Pérez-Silva, William Stark, Emily Steed, Kyösti Sutinen, Ranjit Sukumaran, Dulika Sumathipala, Marie‐Marthe Suner, Michał Szpak, Anja Thormann, Francesca Floriana Tricomi, David Urbina-Gómez, Andres Veidenberg, Thomas Walsh, Brandon Walts, Natalie L Willhoft, Andrea Winterbottom, Elizabeth Wass, Marc Chakiachvili, Bethany Flint, Adam Frankish, Stefano Giorgetti, Leanne Haggerty, Sarah Hunt, Garth R IIsley, Jane Loveland, Fergal J. Martin, Benjamin Moore, Jonathan M. Mudge, Matthieu Muffato, Emily Perry, Magali Ruffier, John Tate, David Thybert, Stephen J. Trevanion, Sarah Dyer, Peter W. Harrison, Kevin Howe, Andrew Yates, Daniel R. Zerbino, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2021 cited by 2,168

  2. The zebrafish reference genome sequence and its relationship to the human genome

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Jianxiang Chi, Beiyuan Fu, Elizabeth Langley, Sean Maguire, Gavin K. Laird, David Lloyd, Emma Kenyon, Sarah Donaldson, Harminder Sehra, J. P. Almeida, Jane Loveland, Stephen J. Trevanion, Matt Jones, Mike Quail, Dave Willey, Adrienne Hunt, John H. Burton, Sarah Sims, Kirsten McLay, Bob Plumb, Joy Davis, Chris M. Clee, Karen Oliver, Richard Clark, Clare Riddle, David Elliott, Glen Threadgold, Glenn Harden, Darren Ware, Sharmin Begum, Beverley Mortimore, Giselle Kerry, P. D. Heath, Benjamin Phillimore, Alan Tracey, N. Corby, Matthew Dunn, Christopher M. Johnson, Jonathan Wood, Susan Clark, Sarah Pelan, Guy Griffiths, Michelle Smith, Rebecca Glithero, Philip Howden, Nicholas Barker, Christine Lloyd, Christopher Stevens, Joanna Harley, Karen Holt, Georgios Panagiotidis, J. Lovell, Helen Beasley, Carl Henderson, Daria Gordon, Katherine A. Auger, Deborah Wright, Joanna Collins, Claire Raisen, Lauren Dyer, Kenric Leung, Lauren Robertson, Kirsty Ambridge, Daniel Leongamornlert, Sarah McGuire, Ruth Gilderthorp, Chris Griffiths, Deepa Manthravadi, Sarah Nichol, Gary Barker and 77 more - Nature 2013 cited by 5,218

  3. Ensembl 2021

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Ilias Lavidas, Anh Tuấn Lê, Diana Lemos, José M. González, José Carlos Marugán, Thomas Maurel, Aoife McMahon, Shamika Mohanan, Benjamin Moore, Matthieu Muffato, Denye N Oheh, Dimitrios Paraschas, Anne Parker, Andrew Parton, Irina Prosovetskaia, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M. Schmitt, Helen Schuilenburg, Dan Sheppard, Emily Steed, Michał Szpak, M. Szuba, Kieron Taylor, Anja Thormann, Glen Threadgold, Brandon Walts, Andrea Winterbottom, Marc Chakiachvili, Ameya Chaubal, Nishadi De Silva, Bethany Flint, Adam Frankish, Sarah Hunt, Garth R IIsley, Nicholas Langridge, Jane Loveland, Fergal J. Martin, Jonathan M. Mudge, Joanella Morales, Emily Perry, Magali Ruffier, John Tate, David Thybert, Stephen J. Trevanion, Fiona Cunningham, Andrew Yates, Daniel R. Zerbino, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2020 cited by 1,759

  4. Ensembl 2018

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Denye N. Ogeh, Chuang Kee Ong, Anne Parker, Mateus Patricio, Harpreet Singh Riat, Helen Schuilenburg, Daniel Sheppard, Helen Sparrow, Kieron R. Taylor, Anja Thormann, Alessandro Vullo, Brandon Walts, Amonida Zadissa, Adam Frankish, Sarah E. Hunt, Myrto Kostadima, Nicholas Langridge, Fergal J. Martin, Matthieu Muffato, Emily Perry, Magali Ruffier, Daniel M. Staines, Stephen J. Trevanion, Bronwen L. Aken, Fiona Cunningham, Andrew D. Yates, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2017 cited by 2,837

  5. Ensembl 2020

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Tuan Le, Diana Lemos, Jose Gonzalez Martinez, Thomas Maurel, Mark D. McDowall, Aoife McMahon, Shamika Mohanan, Benjamin Moore, Michael Nuhn, Denye N. Oheh, Anne Parker, Andrew Parton, Mateus Patricio, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M. Schmitt, Helen Schuilenburg, Dan Sheppard, Mira Sycheva, Marek Szuba, Kieron R. Taylor, Anja Thormann, Glen Threadgold, Alessandro Vullo, Brandon Walts, Andrea Winterbottom, Amonida Zadissa, Marc Chakiachvili, Bethany Flint, Adam Frankish, Sarah E. Hunt, Garth R. Ilsley, Myrto Kostadima, Nick Langridge, Jane E. Loveland, Fergal J. Martin, Joannella Morales, Jonathan M. Mudge, Matthieu Muffato, Emily Perry, Magali Ruffier, Stephen J. Trevanion, Fiona Cunningham, Kevin L. Howe, Daniel R. Zerbino, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 1,221

  6. Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Sunita Kumari, Nick Langridge, Tuan Le, Manuel Luypaert, Gareth Maslen, Thomas Maurel, Benjamin Moore, Matthieu Muffato, Aleena Mushtaq, Guy Naamati, Sushma Naithani, Andrew Olson, Anne Parker, Michael Paulini, Helder Pedro, Emily Perry, Justin Preece, Mark Quinton-Tulloch, Faye Rodgers, Marc Rosello, Magali Ruffier, James Seager, Vasily Sitnik, Michal Szpak, John G. Tate, Marcela K. Tello-Ruiz, Stephen J. Trevanion, Martin Urban, Doreen Ware, Sharon Wei, Gary Williams, Andrea Winterbottom, Magdalena Zarowiecki, Robert D. Finn, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2021 cited by 447

  7. Ensembl 2019

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Aoife C. McMahon, Benjamin Moore, Joannella Morales, Jonathan M. Mudge, Michael Nuhn, Denye N. Ogeh, Anne Parker, Andrew Parton, Mateus Patricio, Ahamed Imran Abdul Salam, Bianca M. Schmitt, Helen Schuilenburg, Daniel Sheppard, Helen Sparrow, Eloise Stapleton, Marek Szuba, Kieron R. Taylor, Glen Threadgold, Anja Thormann, Alessandro Vullo, Brandon Walts, Andrea Winterbottom, Amonida Zadissa, Marc Chakiachvili, Adam Frankish, Sarah E. Hunt, Myrto Kostadima, Nick Langridge, Fergal J. Martin, Matthieu Muffato, Emily Perry, Magali Ruffier, Daniel M. Staines, Stephen J. Trevanion, Bronwen L. Aken, Andrew D. Yates, Daniel R. Zerbino, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 1,068

  8. Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference

    Authors: , , , , , , - Systematic Biology 2015 cited by 272

  9. Ensembl comparative genomics resources

    Authors: , , , , , , , , , , , , , - Database, Database J. Biol. Databases Curation 2016 cited by 493

  10. Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Bastian Fromm, Kevin J. Peterson, Sabyasachi Das, Masayuki Hirano, Jonathan P. Rast, Max D. Cooper, Jordi Paps, Davide Pisani, Shigeru Kuratani, Fergal J. Martin, Wen Wang, Philip C. J. Donoghue, Yong E. Zhang, Juan Pascual‐Anaya - Nature Ecology & Evolution 2024 cited by 123

  11. Ensembl 2016

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Daniel Sheppard, Kieron R. Taylor, Anja Thormann, Alessandro Vullo, Steven P. Wilder, Amonida Zadissa, Ewan Birney, Jennifer L. Harrow, Matthieu Muffato, Emily Perry, Magali Ruffier, Giulietta Spudich, Stephen J. Trevanion, Fiona Cunningham, Bronwen L. Aken, Daniel R. Zerbino, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 1,354

  12. Ensembl 2014

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Magali Ruffier, Dan Sheppard, Kieron Taylor, Anja Thormann, Stephen J. Trevanion, Alessandro Vullo, Steven P. Wilder, Mark Wilson, Amonida Zadissa, Bronwen Aken, Ewan Birney, Fiona Cunningham, Jennifer Harrow, Javier Herrero, Tim Hubbard, Rhoda Kinsella, Matthieu Muffato, Anne Parker, Giulietta Spudich, Andy Yates, Daniel R. Zerbino, Stephen M. J. Searle - Nucleic Acids Research, Nucleic Acids Res. 2013 cited by 1,272

  13. Gibbon genome and the fast karyotype evolution of small apes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Marta Gut, Marta Gut, Matthew W. Hahn, Jessica Hernández-Rodríguez, LaDeana W. Hillier, Robert Hubley, Bianca Ianc, Zsuzsanna Izsvák, Nina G. Jablonski, Laurel Johnstone, Anis Karimpour‐Fard, Miriam K. Konkel, Dennis Kostka, Nathan H. Lazar, Sandra L. Lee, Lora Lewis, Yue Liu, Devin P. Locke, Swapan Mallick, Fernando L. Méndez, Matthieu Muffato, Lynne V. Nazareth, Kimberly A. Nevonen, Majesta O’Bleness, Cornelia Ochis, Duncan T. Odom, Katherine S. Pollard, Javier Quilez, David Reich, Mariano Rocchi, Gerald G. Schumann, Stephen M. J. Searle, James M. Sikela, Gabriella Skollár, Arian F. A. Smit, Kemal Sönmez, Boudewijn ten Hallers, Elizabeth Terhune, Gregg W.C. Thomas, Brygg Ullmer, Mario Ventura, Jerilyn A. Walker, Jeffrey D. Wall, Lutz Walter, Michelle C. Ward, Sarah J. Wheelan, Christopher W. Whelan, Simon White, Larry Wilhelm, August E. Woerner, Mark Yandell, Baoli Zhu, Michael F. Hammer, Tomàs Marquès‐Bonet, Evan E. Eichler, Lucinda A. Fulton, Catrina C. Fronick, Donna M. Muzny, Wesley C. Warren, Kim C. Worley, Jeffrey Rogers, Richard K. Wilson, Richard A. Gibbs - Nature 2014 cited by 393

  14. Standardized benchmarking in the quest for orthologs

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , - Nature Methods 2016 cited by 239

  15. Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom

    Authors: , , , , , - Nature Ecology & Evolution 2023 cited by 61

  16. Ensembl 2013

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Harpreet Singh Riat, Graham R. S. Ritchie, Magali Ruffier, Michael Schuster, Dan Sheppard, Daniel Sobral, Kieron Taylor, Anja Thormann, Stephen J. Trevanion, Simon White, Steven P. Wilder, Bronwen Aken, Ewan Birney, Fiona Cunningham, Ian Dunham, Jennifer Harrow, Javier Herrero, Tim Hubbard, Nathan Johnson, Rhoda Kinsella, Anne Parker, Giulietta Spudich, Andy Yates, Amonida Zadissa, Stephen M. J. Searle - Nucleic Acids Research, Nucleic Acids Res. 2012 cited by 897

  17. The tuatara genome reveals ancient features of amniote evolution

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Jaime Renart, Valentina Peona, Claire Peart, Vera Warmuth, Lu Zeng, R. Daniel Kortschak, Joy M Raison, Valeria Velásquez‐Zapata, Zhiqiang Wu, Didac Santesmasses, Marco Mariotti, Roderic Guigó, Shawn Rupp, Victoria Twort, Nicolás Dussex, Helen R. Taylor, Hideaki Abe, Donna M. Bond, J. M. Paterson, Daniel G. Mulcahy, Vanessa L. González, Charles G. Barbieri, Dustin DeMeo, Stephan Pabinger, Tracey C. van Stijn, Shannon Clarke, Oliver A. Ryder, Scott V. Edwards, Steven L. Salzberg, Lindsay E. Anderson, Nicola J. Nelson, Clive Stone, Ngatiwai Trust Board, Clive Stone, Jim Smillie, Haydn Edmonds - Nature 2020 cited by 207

  18. Ten Years of Collaborative Progress in the Quest for Orthologs

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Jesualdo Tomás Fernández‐Breis, Judith A. Blake, Leszek P. Pryszcz, María Martin, Marina Marcet‐Houben, Mateus Patrício, Matthieu Muffato, Natasha Glover, Odile Lecompte, Paul D. Thomas, Philipp H. Schiffer, Salvador Capella-Gutiérrez, Salvatore Cosentino, Shawn E. McGlynn, Shigehiro Kuraku, Sofia K. Forslund, Steven Kelly, Suzanna Lewis, Tamsin E. M. Jones, Tarcisio Mendes de Farias, Taro Maeda, Toni Gabaldón, Wataru Iwasaki, William R. Pearson, Yan Wang, Yannis Nevers, Yuichiro Hara - Molecular Biology and Evolution 2021 cited by 57

  19. Ensembl 2017

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Harpreet Singh Riat, Dan Sheppard, Helen Sparrow, Kieron Taylor, Anja Thormann, Alessandro Vullo, Brandon Walts, Steven P. Wilder, Amonida Zadissa, Myrto Kostadima, Fergal J. Martin, Matthieu Muffato, Emily Perry, Magali Ruffier, D. Staines, Stephen J. Trevanion, Fiona Cunningham, Andrew Yates, Daniel R. Zerbino, Paul Flicek - Nucleic Acids Research, Nucleic Acids Res. 2016 cited by 551

  20. Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Atsuo Nishino, Matteo Ugolini, Pascal Chourrout, Hiroki Nishida, Rein Aasland, Snehalata Huzurbazar, Éric Westhof, Frédéric Delsuc, Hans Lehrach, Richard Reinhardt, Jean Weissenbach, Scott William Roy, François Artiguenave, John H. Postlethwait, J. Robert Manak, Eric M. Thompson, Olivier Jaillon, Louis Du Pasquier, Pierre Boudinot, David A. Liberles, Jean‐Nicolas Volff, Hervé Philippe, Boris Lenhard, Hugues Roest Crollius, Patrick Wincker, Daniel Chourrout - Science 2010 cited by 304

  21. Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Mario Stanke, Klara Stefflova, Cock van Oosterhout, Frédéric Veyrunes, Ben J. Ward, Fengtang Yang, Golbahar Yazdanifar, Amonida Zadissa, David J. Adams, Alvis Brāzma, Mark Gerstein, Benedict Paten, Son Pham, Thomas Keane, Duncan T. Odom, Paul Flicek - Genome Research 2018 cited by 135

  22. Advances and Applications in the Quest for Orthologs

    Authors: , , , , , , , , , , , , , - Molecular Biology and Evolution 2019 cited by 106

  23. The Quest for Orthologs benchmark service and consensus calls in 2020

    Authors: , , , , , , , , , , , , , , , , , , , , , , - Nucleic Acids Research, Nucleic Acids Res. 2020 cited by 75

  24. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Clifford J. Tabin, Paul Piccinelli, Greg Elgar, Magali Ruffier, Bronwen Aken, Stephen M. J. Searle, Matthieu Muffato, Miguel Pignatelli, Javier Herrero, Matthew C. Jones, C. Titus Brown, Yu‐Wen Chung‐Davidson, Kaben G. Nanlohy, Scot Libants, Chu‐Yin Yeh, David W. McCauley, James A. Langeland, Zeev Pancer, Bernd Fritzsch, Pieter J. de Jong, Baoli Zhu, Lucinda Fulton, Brenda Theising, Paul Flicek, Marianne Bronner‐Fraser, Wesley C. Warren, Sandra W. Clifton, Richard K. Wilson, Weiming Li - Nature Genetics 2013 cited by 652