John Collins
Active 1964–2025
- 203
- Papers
- 28,925
- Citations
- 82
- h-index
- 145
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology35.5%
- Medicine22.2%
- Agricultural and Biological Sciences15%
- Engineering4.5%
- Computer Science3.6%
- Immunology and Microbiology3.5%
- Other15.7%
Topics
- Probiotics and Fermented Foods5.7%
- Gut microbiota and health5%
- Zebrafish Biomedical Research Applications3.3%
- Microbial Metabolites in Food Biotechnology2%
- Genomics and Phylogenetic Studies1.7%
- Gastrointestinal motility and disorders1.7%
- Other80.6%
Coauthors
- Wolfgang Ketter50
- Maria L. Gini30
- Fergus Shanahan16
- Gerald C. O’Sullivan14
- Gerald F. Fitzgerald11
- Alok Gupta9
- Catherine Stanton8
- Konstantina Valogianni8
- R. Paul Ross8
- Bamshad Mobasher7
- David W. Johnson7
- Gillian E. Gardiner7
- Derek L. Stemple6
- Ian Dunham6
- Jan van Dalen6
- Barry Kiely5
- G. Thornton5
- Liam O’Mahony5
- Lorenzo Morelli5
- Markus Peters5
- Alexander Babanov4
- Colum Dunne4
- David Beare4
- Elisabeth M. Busch‐Nentwich4
All papers
- The zebrafish reference genome sequence and its relationship to the human genome
Authors: Kerstin Howe, Matthew D. Clark, Carlos Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John Collins, Sean Humphray, Karen McLaren, Lucy Matthews, Stuart McLaren, Ian Sealy, Mario Cáccamo, Carol Churcher, Carol Scott, Jeffrey C. Barrett, Romke Koch, Gerd-Jörg Rauch, Simon White, William Chow, Britt Kilian, Leonor Quintais, José Afonso Guerra‐Assunção, Yi Zhou, Yong Gu, Jennifer Yen, Jan-Hinnerk Vogel, T. A. Eyre, Seth Redmond, Ruby Banerjee, Jianxiang Chi, Beiyuan Fu, Elizabeth Langley, Sean Maguire, Gavin K. Laird, David Lloyd, Emma Kenyon, Sarah Donaldson, Harminder Sehra, J. P. Almeida, Jane Loveland, Stephen J. Trevanion, Matt Jones, Mike Quail, Dave Willey, Adrienne Hunt, John H. Burton, Sarah Sims, Kirsten McLay, Bob Plumb, Joy Davis, Chris M. Clee, Karen Oliver, Richard Clark, Clare Riddle, David Elliott, Glen Threadgold, Glenn Harden, Darren Ware, Sharmin Begum, Beverley Mortimore, Giselle Kerry, P. D. Heath, Benjamin Phillimore, Alan Tracey, N. Corby, Matthew Dunn, Christopher M. Johnson, Jonathan Wood, Susan Clark, Sarah Pelan, Guy Griffiths, Michelle Smith, Rebecca Glithero, Philip Howden, Nicholas Barker, Christine Lloyd, Christopher Stevens, Joanna Harley, Karen Holt, Georgios Panagiotidis, J. Lovell, Helen Beasley, Carl Henderson, Daria Gordon, Katherine A. Auger, Deborah Wright, Joanna Collins, Claire Raisen, Lauren Dyer, Kenric Leung, Lauren Robertson, Kirsty Ambridge, Daniel Leongamornlert, Sarah McGuire, Ruth Gilderthorp, Chris Griffiths, Deepa Manthravadi, Sarah Nichol, Gary Barker and 77 more - Nature 2013 cited by 5,218
- Change in albuminuria and subsequent risk of end-stage kidney disease: an individual participant-level consortium meta-analysis of observational studies
Authors: Josef Coresh, Hiddo J.L. Heerspink, Yingying Sang, Kunihiro Matsushita, Johan Ärnlöv, Brad C. Astor, Corri Black, Nigel J. Brunskill, Juan Jesús Carrero, Harold I. Feldman, Caroline S. Fox, Lesley A. Inker, Areef Ishani, Sadayoshi Ito, Simerjot K Jassal, Tsuneo Konta, Kevan R. Polkinghorne, Solfrid Romundstad, Marit D. Solbu, Nikita Stempniewicz, Bénédicte Stengel, Marcello Tonelli, Mitsumasa Umesawa, Sushrut S. Waikar, Chi-Pang Wen, Jack F.M. Wetzels, Mark Woodward, Morgan E. Grams, Csaba P. Kövesdy, Andrew S. Levey, Ron T. Gansevoort, Lawrence J. Appel, Tom Greene, Teresa K. Chen, John Chalmers, Hisatomi Arima, Vlado Perkovic, Adeera Levin, Ognjenka Djurdjev, Mila Tang, Joseph V. Nally, Sankar D. Navaneethan, Jesse D. Schold, Misghina Weldegiorgis, William G. Herrington, Margaret Smith, Chun-Shuo Hsu, Shih‐Jen Hwang, Alex R. Chang, H. Lester Kirchner, Jamie A. Green, Kevin Ho, Angharad Marks, Gordon Prescott, Laura E. Clark, Nick Fluck, Varda Shalev, Gabriel Chodick, Peter J. Blankestijn, Arjan van Zuilen, Jan AJG van den Brand, Mark J. Sarnak, Erwin Böttinger, Girish N. Nadkarni, Stephen G. Ellis, Rajiv Nadukuru, Marie Metzger, Martin Flamant, Pascal Houillier, Jean‐Philippe Haymann, Marc Froissart, Timothy Kenealy, Raina Elley, John Collins, Paul Drury, John K. Cuddeback, Elizabeth L. Ciemins, Rich Stempniewicz, Robert G. Nelson, William C. Knowler, Stephen J. L. Bakker, Rupert Major, James Medcalf, David Shepherd, Elizabeth Barrett‐Connor, Jaclyn Bergstrom, Joachim H. Ix, Miklos Z. Molnar, Keiichi Sumida, Dick de Zeeuw, Barry M. Brenner, Abdul Rashid Qureshi, Carl‐Gustaf Elinder, Björn Runesson, Marie Evans, Mårten Segelmark, Maria Stendahl, Staffan Schön, David Naimark, Navdeep Tangri and 38 more - The Lancet Diabetes & Endocrinology 2019 cited by 320
- Lactobacillus and bifidobacterium in irritable bowel syndrome: Symptom responses and relationship to cytokine profiles
Authors: Liam O’Mahony, Jane McCarthy, Peter Kelly, George Hurley, Fangyi Luo, Ker‐Sang Chen, Gerald C. O’Sullivan, Barry Kiely, John Collins, Fergus Shanahan, Eamonn M.M. Quigley - Gastroenterology 2005 cited by 1,432
- A high-resolution mRNA expression time course of embryonic development in zebrafish
Authors: Richard White, John Collins, Ian M. Sealy, Neha Wali, Christopher M. Dooley, Zsofia Digby, Derek L. Stemple, Daniel N. Murphy, Konstantinos Billis, Thibaut Hourlier, Anja Füllgrabe, Matthew P. Davis, Anton J. Enright, Elisabeth M. Busch‐Nentwich - eLife 2017 cited by 394
- Placentation defects are highly prevalent in embryonic lethal mouse mutants
Authors: Vicente Pérez-García, Elena Fineberg, Robert Wilson, Alexander Murray, Cecilia Mazzeo, Catherine Tudor, Arnold R. Sienerth, Jacqueline K. White, Elizabeth Tuck, Edward J. Ryder, Diane Gleeson, Emma Siragher, Hannah Wardle‐Jones, Nicole Staudt, Neha Wali, John Collins, Stefan H. Geyer, Elisabeth M. Busch‐Nentwich, Antonella Galli, James C. Smith, Elizabeth J. Robertson, David J. Adams, Wolfgang J. Weninger, Timothy J. Mohun, Myriam Hemberger - Nature 2018 cited by 387
- I tried a bunch of things: The dangers of unexpected overfitting in classification of brain data
Authors: Mahan Hosseini, Michael Powell, John Collins, Chloe Callahan-Flintoft, William Jones, Howard Bowman, Brad Wyble - Neuroscience & Biobehavioral Reviews 2020 cited by 172
- Dietary synbiotics reduce cancer risk factors in polypectomized and colon cancer patients
Authors: Joseph Rafter, Michael Bennett, Giovanna Caderni, Yvonne Clune, Róisín Hughes, Pernilla C. Karlsson, Annett Klinder, Micheal O'Riordan, Gerald C. O’Sullivan, Beatrice L. Pool‐Zobel, Gerhard Rechkemmer, Monika Roller, Ian Rowland, Maddalena Salvadori, Herbert Thijs, Jan Van Loo, Bernhard Watzl, John Collins - American Journal of Clinical Nutrition 2007 cited by 587
- In vitro selection criteria for probiotic bacteria of human origin: correlation with in vivo findings
Authors: Colum Dunne, Liam O’Mahony, Lisa Murphy, G. Thornton, Darrin Morrissey, Sile O′Halloran, Maria Feeney, Sarah Flynn, Gerald F. Fitzgerald, Charles Daly, Barry Kiely, Gerald C. O’Sullivan, Fergus Shanahan, John Collins - American Journal of Clinical Nutrition 2001 cited by 911
- Antibiotic Susceptibility of Potentially Probiotic Lactobacillus Species
Authors: William P. Charteris, Phillip M. Kelly, Lorenzo Morelli, John Collins - Journal of Food Protection 1998 cited by 527
- A Randomized, Controlled Trial of Early versus Late Initiation of Dialysis
Authors: Bruce A. Cooper, Pauline Branley, Liliana Bulfone, John Collins, Jonathan C. Craig, Margaret B. Fraenkel, Anthony Harris, David W. Johnson, Joan Kesselhut, Jing Jing Li, Grant Luxton, Andrew Pilmore, David J. Tiller, David C.H. Harris, Carol A. Pollock - New England Journal of Medicine 2010 cited by 856
- Periodontal Infection as a Possible Risk Factor for Preterm Low Birth Weight
Authors: Steven Offenbacher, Vern L. Katz, Gregory Fertik, John Collins, Doryck Boyd, Gayle Maynor, Rosemary G. McKaig, James D. Beck - Journal of Periodontology 1996 cited by 1,334
- Measures of chronic kidney disease and risk of incident peripheral artery disease: a collaborative meta-analysis of individual participant data
Authors: Kunihiro Matsushita, Shoshana H. Ballew, Josef Coresh, Hisatomi Arima, Johan Ärnlöv, Massimo Círillo, Natalie Ebert, Jade S. Hiramoto, Heejin Kimm, Michael G. Shlipak, Frank L.J. Visseren, Ron T. Gansevoort, Csaba P. Kövesdy, Varda Shalev, Mark Woodward, Florian Kronenberg, John Chalmers, Hisatomi Arima, Vlado Perkovic, Morgan E. Grams, Yingying Sang, Elke Schäeffner, Peter Martus, Adeera Levin, Ognjenka Djurdjev, Mila Tang, Gunnar H. Heine, Sarah Seiler, Adam M. Zawada, Insa E. Emrich, Mark J. Sarnak, Ronit Katz, Hermann Brenner, Ben Schöttker, Dietrich Rothenbacher, Kai‐Uwe Saum, Anna Köttgen, Markus P. Schneider, Kai‐Uwe Eckardt, Jamie Green, H. Lester Kirchner, Alex R. Chang, Corri Black, Angharad Marks, Gordon Prescott, Laura Clark, Nick Fluck, Sun Ha Jee, Yejin Mok, Gabriel Chodick, Varda Shalev, Jack F.M. Wetzels, Peter J. Blankestijn, Arjan D. van Zuilen, Michiel L. Bots, Carmen Peralta, Jade Hiromoto, Ronit Katz, Mark J. Sarnak, Erwin Böttinger, Girish N. Nadkarni, Stephen B. Ellis, Rajiv Nadukuru, Timothy Kenealy, C. Raina Elley, John Collins, Paul Drury, Stephan J. L. Bakker, Hiddo J.L. Heerspink, Simerjot K Jassal, Jaclyn Bergstrom, Joachim H. Ix, Elizabeth Barrett‐Connor, Kamyar Kalantar‐Zadeh, Juan Jesús Carrero, Alessandro Gasparini, Abdul Rashid Qureshi, Peter Bárány, Ale Algra, Yolanda van der Graaf, Marie Evans, Mårten Segelmark, Maria Stendahl, Staffan Schön, Navdeep Tangri, Maneesh Sud, David Naimark, Lars Lannfelt, Anders Larsson, Stein Hallan, Andrew S. Levey, Jingsha Chen, Lucia Kwak, Morgan E. Grams, Yingying Sang - The Lancet Diabetes & Endocrinology 2017 cited by 167
- Evaluating and Optimizing Opportunity Fast-Charging Schedules in Transit Battery Electric Bus Networks
Authors: Ayman Abdelwahed, Pieter L. van den Berg, Tobias Brandt, John Collins, Wolfgang Ketter - Transportation Science, Transp. Sci. 2020 cited by 120
- Relationship of Estimated GFR and Albuminuria to Concurrent Laboratory Abnormalities: An Individual Participant Data Meta-analysis in a Global Consortium
Authors: Lesley A. Inker, Morgan E. Grams, Andrew S. Levey, Josef Coresh, Massimo Círillo, John Collins, Ron T. Gansevoort, Orlando M. Gutiérrez, Takayuki Hamano, Gunnar H. Heine, Shizukiyo Ishikawa, Sun Ha Jee, Florian Kronenberg, Martin Landray, Katsuyuki Miura, Girish N. Nadkarni, Carmen A. Peralta, Dietrich Rothenbacher, Elke Schäeffner, Sanaz Sedaghat, Michael G. Shlipak, Luxia Zhang, Arjan D. van Zuilen, Stein Hallan, Csaba P. Kövesdy, Mark Woodward, Adeera Levin, Brad C. Astor, Larry Appel, Tom Greene, Teresa C. Chen, John Chalmers, Mark Woodward, Hisatomi Arima, Vlado Perkovic, Hiroshi Yatsuya, Koji Tamakoshi, Yuanying Li, Yoshihisa Hirakawa, Josef Coresh, Kunihiro Matsushita, Morgan E. Grams, Yingying Sang, Kevan R. Polkinghorne, Steven J. Chadban, Robert C. Atkins, Adeera Levin, Ognjenka Djurdjev, Luxia Zhang, Lisheng Liu, Ming‐Hui Zhao, Fang Wang, Jinwei Wang, Elke Schäeffner, Natalie Ebert, Peter Martus, Adeera Levin, Ognjenka Djurdjev, Mila Tang, Gunnar H. Heine, Insa E. Emrich, Sarah Seiler, Adam M. Zawada, Joseph V. Nally, Sankar D. Navaneethan, Jesse D. Schold, Luxia Zhang, Ming‐Hui Zhao, Fang Wang, Jinwei Wang, Michael G. Shlipak, Mark J. Sarnak, Ronit Katz, Jade S. Hiramoto, Hiroyasu Iso, Kazumasa Yamagishi, Mitsumasa Umesawa, Isao Muraki, Masafumi Fukagawa, Shoichi Maruyama, Takayuki Hamano, Takeshi Hasegawa, Naohiko Fujii, David C. Wheeler, John Emberson, John Townend, Martin Landray, Hermann Brenner, Ben Schöttker, Kai‐Uwe Saum, Dietrich Rothenbacher, Caroline S. Fox, Shih‐Jen Hwang, Anna Köttgen, Florian Kronenberg, Markus P. Schneider, Kai‐Uwe Eckardt, Jamie Green, H. Lester Kirchner, Alex R. Chang and 134 more - American Journal of Kidney Diseases 2018 cited by 94
- The Education Effect on Population Health: A Reassessment
Authors: David P. Baker, Juan León, Emily G. Smith Greenaway, John Collins, Marcela Movit - Population and Development Review 2011 cited by 408
- Trajectories and risk profiles of pain in persons with radiographic, symptomatic knee osteoarthritis: data from the osteoarthritis initiative
Authors: John Collins, J.N. Katz, Elizabeth E. Dervan, E. Losina - Osteoarthritis and Cartilage 2014 cited by 252
- Cooperative Learning for Smart Charging of Shared Autonomous Vehicle Fleets
Authors: Ramin Ahadi, Wolfgang Ketter, John Collins, Nicolò Daina - Transportation Science, Transp. Sci. 2022 cited by 26
- Direct In Situ Viability Assessment of Bacteria in Probiotic Dairy Products Using Viability Staining in Conjunction with Confocal Scanning Laser Microscopy
Authors: Mark A.E. Auty, Gillian E. Gardiner, S. J. McBrearty, Eoin O’Sullivan, Daniel M. Mulvihill, John Collins, Gerald F. Fitzgerald, Catherine Stanton, R. Paul Ross - Applied and Environmental Microbiology 2001 cited by 214
- Comparative Transcriptome Analyses Indicate Molecular Homology of Zebrafish Swimbladder and Mammalian Lung
Authors: Weiling Zheng, Zhengyuan Wang, John Collins, Robert Andrews, Derek L. Stemple, Zhiyuan Gong - PLoS ONE 2011 cited by 177
- Occupancy grid mapping: An empirical evaluation
Authors: Thomas Collins, John Collins, Conor Ryan - Mediterranean Conference on Control & Automation 2007 cited by 73
- Selection of Probiotic Strains for Human Applications
Authors: John Collins, G. Thornton, G. O. Sullivan - International Dairy Journal 1998 cited by 350
- Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118 The GenBank accession number for the sequence reported in this paper is AF408405.
Authors: Sarah Flynn, Douwe van Sinderen, G. Thornton, Helge Holo, Ingolf F. Nes, John Collins - Microbiology 2002 cited by 266
- Deep Learning for Pollen Sac Detection and Measurement on Honeybee Monitoring Video
Authors: Cheng Yang, John Collins - International Conference on Image and Vision Computing New Zealand (IVCNZ) 2019 cited by 25
- Culture‐independent analysis of the gut microbiota in colorectal cancer and polyposis
Authors: Pauline D. Scanlan, Fergus Shanahan, Yvonne Clune, John Collins, Gerald C. O’Sullivan, Micheal O'Riordan, Elaine Holmes, Yulan Wang, Julian R. Marchesi - Environmental Microbiology 2008 cited by 238
