Mario Cáccamo
Active 2001–2025
- 48
- Papers
- 20,839
- Citations
- 37
- h-index
- 43
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology54.3%
- Agricultural and Biological Sciences16.7%
- Medicine8.7%
- Immunology and Microbiology8.2%
- Environmental Science4.1%
- Neuroscience3.1%
- Other4.9%
Topics
- Genomics and Phylogenetic Studies6.6%
- Zebrafish Biomedical Research Applications4%
- Chromosomal and Genetic Variations3.4%
- Genetic Mapping and Diversity in Plants and Animals3.3%
- Wheat and Barley Genetics and Pathology2.8%
- RNA and protein synthesis mechanisms2.1%
- Other77.8%
Coauthors
- Andreas Kähäri6
- Guy Coates6
- Laura Clarke6
- Thomas A. Down6
- Tim Cutts6
- Cristóbal Uauy5
- Damian Keefe5
- Kerstin Howe5
- Ricardo H. Ramírez-González5
- Richard M. Leggett5
- Val Curwen5
- Yuan Chen5
- Arek Kasprzyk4
- Craig Melsopp4
- Felix Kokocinski4
- Fiona Cunningham4
- Hana Šimková4
- Kerstin Jekosch4
- Klaus Mayer4
- Martin Hammond4
- Paul Flicek4
- Robert P. Davey4
- Vivek Iyer4
- Curtis Pozniak3
All papers
- The zebrafish reference genome sequence and its relationship to the human genome
Authors: Kerstin Howe, Matthew D. Clark, Carlos Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John Collins, Sean Humphray, Karen McLaren, Lucy Matthews, Stuart McLaren, Ian Sealy, Mario Cáccamo, Carol Churcher, Carol Scott, Jeffrey C. Barrett, Romke Koch, Gerd-Jörg Rauch, Simon White, William Chow, Britt Kilian, Leonor Quintais, José Afonso Guerra‐Assunção, Yi Zhou, Yong Gu, Jennifer Yen, Jan-Hinnerk Vogel, T. A. Eyre, Seth Redmond, Ruby Banerjee, Jianxiang Chi, Beiyuan Fu, Elizabeth Langley, Sean Maguire, Gavin K. Laird, David Lloyd, Emma Kenyon, Sarah Donaldson, Harminder Sehra, J. P. Almeida, Jane Loveland, Stephen J. Trevanion, Matt Jones, Mike Quail, Dave Willey, Adrienne Hunt, John H. Burton, Sarah Sims, Kirsten McLay, Bob Plumb, Joy Davis, Chris M. Clee, Karen Oliver, Richard Clark, Clare Riddle, David Elliott, Glen Threadgold, Glenn Harden, Darren Ware, Sharmin Begum, Beverley Mortimore, Giselle Kerry, P. D. Heath, Benjamin Phillimore, Alan Tracey, N. Corby, Matthew Dunn, Christopher M. Johnson, Jonathan Wood, Susan Clark, Sarah Pelan, Guy Griffiths, Michelle Smith, Rebecca Glithero, Philip Howden, Nicholas Barker, Christine Lloyd, Christopher Stevens, Joanna Harley, Karen Holt, Georgios Panagiotidis, J. Lovell, Helen Beasley, Carl Henderson, Daria Gordon, Katherine A. Auger, Deborah Wright, Joanna Collins, Claire Raisen, Lauren Dyer, Kenric Leung, Lauren Robertson, Kirsty Ambridge, Daniel Leongamornlert, Sarah McGuire, Ruth Gilderthorp, Chris Griffiths, Deepa Manthravadi, Sarah Nichol, Gary Barker and 77 more - Nature 2013 cited by 5,218
- Control of Treg and TH17 cell differentiation by the aryl hydrocarbon receptor
Authors: Francisco J. Quintana, Alexandre S. Basso, Antonio Iglesias, Thomas Korn, Mauricio Farez, Estelle Bettelli, Mario Cáccamo, Mohamed Oukka, Howard L. Weiner - Nature 2008 cited by 1,842
- A chromosome conformation capture ordered sequence of the barley genome
Authors: Martin Mascher, Heidrun Gundlach, Axel Himmelbach, Sebastian Beier, Sven Twardziok, Thomas Wicker, Volodymyr Radchuk, Christoph Dockter, Pete E. Hedley, Joanne Russell, Micha Bayer, Luke Ramsay, Hui Liu, Georg Haberer, Xiao‐Qi Zhang, Qisen Zhang, Roberto A. Barrero, Li Lin, Stefan Taudien, Marco Groth, Marius Felder, Alex Hastie, Hana Šimková, Helena Staňková, Jan Vrána, Saki Chan, María Muñoz‐Amatriaín, Rachid Ounit, Steve Wanamaker, Dan Bolser, Christian Colmsee, Thomas Schmutzer, Lala Aliyeva‐Schnorr, Stefano Grasso, Jaakko Tanskanen, Anna Chailyan, Dharanya Sampath, Darren Heavens, Leah Clissold, Sujie Cao, Brett Chapman, Fei Dai, Yong Nam Han, Hua Li, Xuan Li, Chongyun Lin, John K. McCooke, Cong Tan, Penghao Wang, Songbo Wang, Shuya Yin, Gaofeng Zhou, Jesse Poland, M. Bellgard, Ljudmilla Borisjuk, Andreas Houben, Jaroslav Doležel, Sarah Ayling, Stefano Lonardi, Paul Kersey, Peter Langridge, Gary J. Muehlbauer, Matthew D. Clark, Mario Cáccamo, Alan H. Schulman, Klaus Mayer, Matthias Platzer, Timothy J. Close, Uwe Scholz, Mats Hansson, Guoping Zhang, Ilka Braumann, M. Spannagl, Chengdao Li, Robbie Waugh, Nils Stein - Nature 2017 cited by 1,595
- Analyses of pig genomes provide insight into porcine demography and evolution
Authors: Martien A. M. Groenen, Alan Archibald, Hirohide Uenishi, Christopher K. Tuggle, Yasuhiro Takeuchi, Max F. Rothschild, Claire Rogel Gaillard, Chankyu Park, Denis Milan, Hendrik‐Jan Megens, Shengting Li, Denis M. Larkin, Heebal Kim, Laurent Frantz, Mario Cáccamo, Hyeonju Ahn, Bronwen Aken, Anna Anselmo, Christian Anthon, Loretta Auvil, Bouabid Badaoui, Craig W. Beattie, Christian Bendixen, Daniel Berman, Frank Blecha, Jonas Blomberg, Lars Bolund, Mirte Bosse, Sara Botti, Bujie Zhan, Megan Bystrom, Boris Capitanu, Denise Carvalho‐Silva, Patrick Chardon, Celine Chen, Ryan P. Cheng, Sang-Haeng Choi, William Chow, Richard Clark, Christopher Clee, R.P.M.A. Crooijmans, Harry Dawson, Patrice Déhais, Fioravante De Sapio, Bert Dibbits, Nizar Drou, Zhiqiang Du, Kellye Eversole, João Fadista, Susan Fairley, Thomas Faraut, Geoffrey J. Faulkner, Katie E. Fowler, Merete Fredholm, Eric Fritz, James Gilbert, Elisabetta Giuffra, Jan Gorodkin, Darren K. Griffin, Jennifer Harrow, Alexander Hayward, Kerstin Howe, Zhi‐Liang Hu, Sean Humphray, Toby Hunt, Henrik Hornshøj, Jin‐Tae Jeon, Patric Jern, Matthew C. Jones, Jerzy Jurka, Hiroyuki Kanamori, Ronan Kapétanovic, Jaebum Kim, Jae-Hwan Kim, Kyuwon Kim, Tae-Hun Kim, Greger Larson, Kyooyeol Lee, Kyung‐Tai Lee, Richard M. Leggett, Harris A. Lewin, Yingrui Li, Wansheng Liu, Jane Loveland, Yao Lu, Joan K. Lunney, Jian Ma, Ole Madsen, Katherine Mann, Lucy Matthews, Stuart McLaren, Takeya Morozumi, Michael P. Murtaugh, Jitendra Narayan, Dinh Truong Nguyen, Peixiang Ni, Song-Jung Oh, Suneel Kumar Onteru, Frank Panitz, Eung-Woo Park and 36 more - Nature 2012 cited by 1,448
- Reap the crop wild relatives for breeding future crops
Authors: Abhishek Bohra, Benjamin Kilian, Shoba Sivasankar, Mario Cáccamo, Chikelu Mba, Susan R. McCouch, Rajeev K. Varshney - Trends in biotechnology 2021 cited by 358
- A chromosome-based draft sequence of the hexaploid bread wheat ( Triticum aestivum ) genome
Authors: Klaus Mayer, Jane Rogers, Jaroslav Doležel, Curtis Pozniak, Kellye Eversole, Catherine Feuillet, Bikram Gill, Bernd Friebe, Adam J. Lukaszewski, Pierre Sourdille, Takashi R. Endo, Marie Kubaláková, Jarmila Číhalíková, Zdeňka Dubská, Jan Vrána, Romana Šperková, Hana Šimková, Melanie Febrer, Leah Clissold, Kirsten McLay, Kuldeep Singh, Parveen Chhuneja, Nagendra Kumar Singh, Jitendra P. Khurana, Eduard Akhunov, Frédéric Choulet, Adriana Alberti, Valérie Barbe, Patrick Wincker, Hiroyuki Kanamori, Fuminori Kobayashi, Takeshi Itoh, Takashi Matsumoto, Hiroaki Sakai, Tsuyoshi Tanaka, Jianzhong Wu, Yasunari Ogihara, Hirokazu Handa, P. Ron Maclachlan, Andrew Sharpe, Darrin Klassen, David Edwards, Jacqueline Batley, Odd-Arne Olsen, Simen R. Sandve, Sigbjørn Lien, Burkhard Steuernagel, Brande B. H. Wulff, Mario Cáccamo, Sarah Ayling, Ricardo H. Ramírez-González, Bernardo Clavijo, Jonathan Wright, Matthias Pfeifer, M. Spannagl, Mihaela Martis, Martin Mascher, Jarrod Chapman, Jesse Poland, Uwe Scholz, Kerrie Barry, Robbie Waugh, Daniel S. Rokhsar, Gary J. Muehlbauer, Nils Stein, Heidrun Gundlach, Matthias Zytnicki, Véronique Jamilloux, Hadi Quesneville, Thomas Wicker, Primetta Faccioli, Moreno Colaiacovo, A. M. Stanca, Hikmet Budak, Luigi Cattivelli, Natasha Glover, Lise Pingault, Etienne Paux, Sapna Sharma, R. Appels, M. Bellgard, Brett Chapman, Thomas Nußbaumer, Kai Christian Bader, Hélène Rimbert, Shichen Wang, R. E. Knox, Andrzej Kilian, Michaël Alaux, Françoise Alfama, L.J. Couderc, Nicolas Guilhot, Claire Viseux, Mikaël Loaec, Beat Keller, Sébastien Praud - Science 2014 cited by 1,647
- De novo assembly and genotyping of variants using colored de Bruijn graphs
Authors: Zamin Iqbal, Mario Cáccamo, Isaac Turner, Paul Flicek, Gil McVean - Nature Genetics 2012 cited by 716
- Ancient hybridizations among the ancestral genomes of bread wheat
Authors: Thomas Marcussen, Simen R. Sandve, Lise Heier, M. Spannagl, Matthias Pfeifer, Kjetill S. Jakobsen, Brande B. H. Wulff, Burkhard Steuernagel, Klaus Mayer, Odd-Arne Olsen, Jane Rogers, Jaroslav Doležel, Curtis Pozniak, Kellye Eversole, Catherine Feuillet, Bikram Gill, Bernd Friebe, Adam J. Lukaszewski, Pierre Sourdille, Takashi R. Endo, Marie Kubaláková, Jarmila Číhalíková, Zdeňka Dubská, Jan Vrána, Romana Šperková, Hana Šimková, Melanie Febrer, Leah Clissold, Kirsten McLay, Kuldeep Singh, Parveen Chhuneja, Nagendra Kumar Singh, Jitendra P. Khurana, Eduard Akhunov, Frédéric Choulet, Adriana Alberti, Valérie Barbe, Patrick Wincker, Hiroyuki Kanamori, Fuminori Kobayashi, Takeshi Itoh, Takashi Matsumoto, Hiroaki Sakai, Tsuyoshi Tanaka, Jianzhong Wu, Yasunari Ogihara, Hirokazu Handa, P. Ron Maclachlan, Andrew Sharpe, Darrin Klassen, David Edwards, Jacqueline Batley, Sigbjørn Lien, Mario Cáccamo, Sarah Ayling, Ricardo H. Ramírez-González, Bernardo Clavijo, Jonathan Wright, Mihaela Martis, Martin Mascher, Jarrod Chapman, Jesse Poland, Uwe Scholz, Kerrie Barry, Robbie Waugh, Daniel S. Rokhsar, Gary J. Muehlbauer, Nils Stein, Heidrun Gundlach, Matthias Zytnicki, Véronique Jamilloux, Hadi Quesneville, Thomas Wicker, Primetta Faccioli, Moreno Colaiacovo, A. M. Stanca, Hikmet Budak, Luigi Cattivelli, Natasha Glover, Lise Pingault, Etienne Paux, Sapna Sharma, R. Appels, M. Bellgard, Brett Chapman, Thomas Nussbaumer, Kai Christian Bader, Hélène Rimbert, Shichen Wang, R. E. Knox, Andrzej Kilian, Michaël Alaux, Françoise Alfama, L.J. Couderc, Nicolas Guilhot, Claire Viseux, Mikaël Loaec, Beat Keller, Sébastien Praud - Science 2014 cited by 839
- The European Genome-phenome Archive of human data consented for biomedical research
Authors: Ilkka Lappalainen, J. P. Almeida, Vasudev Kumanduri, Alexander Senf, John Dylan Spalding, Saif Ur-Rehman, Gary Saunders, Jag Kandasamy, Mario Cáccamo, Rasko Leinonen, Brendan Vaughan, Thomas Laurent, Francis Rowland, Pablo Marín-García, Jonathan Barker, Petteri Jokinen, Angel Carreño Torres, Jordi Rambla, Oscar Martinez Llobet, Ignacio Medina, Marc Sitges Puy, Mario Alberich, Sabela de la Torre, Arcadi Navarro, Justin Paschall, Paul Flicek - Nature Genetics 2015 cited by 378
- Genetic architecture and evolution of the S locus supergene in Primula vulgaris
Authors: Jinhong Li, Jonathan M. Cocker, Jonathan Wright, Margaret A. Webster, Mark McMullan, Sarah Dyer, David Swarbreck, Mario Cáccamo, Cock van Oosterhout, Philip M. Gilmartin - Nature Plants 2016 cited by 191
- Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints
Authors: Carolina Sansaloni, Jorge Franco, Bruno Santos, Lawrence Percival‐Alwyn, Sukhwinder Singh, César Daniel Petroli, Jaime Campos, Kate Dreher, Thomas Payne, David Marshall, Benjamin Kilian, Iain Milne, Sebastian Raubach, Paul D. Shaw, Gordon Stephen, Jason Carling, Carolina Saint Pierre, Juan Burgueño, José Crosa, HuiHui Li, Carlos Guzmán, Zakaria Kehel, Ahmed Amri, Andrzej Kilian, Peter Wenzl, Cristóbal Uauy, Marianne Bänziger, Mario Cáccamo, Kevin V. Pixley - Nature Communications 2020 cited by 260
- Genome sequence and genetic diversity of European ash trees
Authors: Elizabeth Sollars, Andrea L. Harper, Laura J. Kelly, Christine Sambles, Ricardo H. Ramírez-González, David Swarbreck, Gemy Kaithakottil, Endymion D. Cooper, Cristóbal Uauy, Lenka Havlíčková, G. D. N. Worswick, David J. Studholme, Jasmin Zohren, Deborah L. Salmon, Bernardo Clavijo, Yi Li, Zhesi He, Alison Fellgett, Lea Vig McKinney, Lene Rostgaard Nielsen, G. C. Douglas, Erik Dahl Kjær, J. Allan Downie, David Boshier, Steve Lee, Jo Clark, Murray Grant, Ian Bancroft, Mario Cáccamo, Richard J. A. Buggs - Nature 2016 cited by 233
- An Overview of Ensembl
Authors: Ewan Birney, T. Daniel Andrews, A. Paul Bevan, Mario Cáccamo, Yuan Chen, Laura Clarke, Guy Coates, James Cuff, Val Curwen, Tim Cutts, Thomas A. Down, Eduardo Eyras, Xosé M. Fernández, Paul J. Gane, Brian Gibbins, James Gilbert, M. Hammond, Hans-Rudolf Hotz, Vivek Iyer, Kerstin Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, Stephen Keenan, Heikki Lehväslaiho, Graham McVicker, Craig Melsopp, Patrick Meidl, Emmanuel Mongin, Roger Pettett, Simon Potter, Glenn Proctor, Mark G. Rae, Steve Searle, Guy Slater, Damian Smedley, James Smith, Will Spooner, Arne Stabenau, James Stalker, Roy Storey, Abel Ureta-Vidal, K. Cara Woodwark, Graham Cameron, Richard Durbin, Anthony J. Cox, Tim Hubbard, Michèle Clamp - Genome Research 2004 cited by 475
- PolyMarker: A fast polyploid primer design pipeline
Authors: Ricardo H. Ramirez-Gonzalez, Cristobal Uauy, Mario Cáccamo - Bioinformatics, Bioinform. 2015 cited by 268
- Conservation and divergence of gene families encoding components of innate immune response systems in zebrafish
Authors: Cornelia Stein, Mario Cáccamo, Gavin K. Laird, Maria Leptin - Genome biology 2007 cited by 407
- Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
Authors: Hiroshi Kikuta, Mary Laplante, Pavla Navrátilová, Anna Z. Komisarczuk, Pär G. Engström, David Fredman, Altuna Akalin, Mario Cáccamo, Ian M. Sealy, Kerstin Howe, Julien Ghislain, Guillaume Pézeron, Philippe Mourrain, Staale Ellingsen, Andrew C. Oates, Christine Thisse, Bernard Thisse, Isabelle Foucher, Birgit Adolf, Andrea Geling, Boris Lenhard, Thomas Becker - Genome Research 2007 cited by 374
- Updated guidelines for gene nomenclature in wheat
Authors: Scott A. Boden, R. A. McIntosh, Cristóbal Uauy, Simon G. Krattinger, Jorge Dubcovsky, William J. Rogers, X. C. Xia, Е. Д. Бадаева, Alison R. Bentley, Gina Brown‐Guedira, Mario Cáccamo, Luigi Cattivelli, Parveen Chhuneja, James Cockram, Bruno Contreras‐Moreira, Susanne Dreisigacker, David Edwards, Fernanda G. González, Carlos Guzmán, Tatsuya M. Ikeda, I. Karsaï, Shuhei Nasuda, Curtis Pozniak, R. Prins, Taner Z. Sen, Paula Silva, Hana Šimková, Y Zhang, the Wheat Initiative - Theoretical and Applied Genetics 2023 cited by 100
- Fruit Development in Sweet Cherry
Authors: Edoardo Vignati, Marzena Lipska, Jim M. Dunwell, Mario Cáccamo, Andrew J. Simkin - Plants 2022 cited by 69
- gEVAL - a web-based browser for evaluating genome assemblies
Authors: William Chow, Kim Brügger, Mario Cáccamo, Ian Sealy, James W. Torrance, Kerstin Howe - Bioinformatics, Bioinform. 2016 cited by 401
- Assemblathon 1: A competitive assessment of de novo short read assembly methods
Authors: Dent Earl, Keith Bradnam, John St. John, Aaron E. Darling, Dawei Lin, Joseph Fass, Hung On Ken Yu, Vince Buffalo, Daniel R. Zerbino, Mark Diekhans, Ngan Nguyen, Pramila Ariyaratne, Wing‐Kin Sung, Zemin Ning, Matthias Haimel, Jared T. Simpson, Nuno A. Fonseca, İnanç Birol, Roderick Docking, Isaac Ho, Daniel S. Rokhsar, Rayan Chikhi, Dominique Lavenier, Guillaume Chapuis, Delphine Naquin, Nicolas Maillet, Michael C. Schatz, David R. Kelley, Adam M. Phillippy, Sergey Koren, Shiaw‐Pyng Yang, Wei Wu, Wen‐Chi Chou, Anuj Srivastava, Timothy I. Shaw, J. Graham Ruby, Peter Skewes-Cox, Miguel Betegon, Michelle Dimon, Victor Solovyev, Igor Seledtsov, Petr Kosarev, Denis Vorobyev, Ricardo H. Ramírez-González, Richard M. Leggett, Dan MacLean, Fangfang Xia, Ruibang Luo, Zhenyu Li, Yinlong Xie, Binghang Liu, Sante Gnerre, Iain MacCallum, Dariusz Przybylski, Filipe J. Ribeiro, Shuangye Yin, Ted Sharpe, Giles Hall, Paul Kersey, Richard Durbin, Shaun D. Jackman, Jarrod Chapman, Xiaoqiu Huang, Joseph L. DeRisi, Mario Cáccamo, Yingrui Li, David B. Jaffe, Richard E. Green, David Haussler, Ian Korf, Benedict Paten - Genome Research 2011 cited by 539
- Data management challenges for artificial intelligence in plant and agricultural research
Authors: Hugh F. Williamson, Julia Brettschneider, Mario Cáccamo, Robert P. Davey, Carole A. Goble, Paul J. Kersey, Sean T. May, Richard J. Morris, Richard Ostler, Tony P. Pridmore, Christopher J. Rawlings, David J. Studholme, Sotirios A. Tsaftaris, Sabina Leonelli - F1000Research 2021 cited by 45
- Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments
Authors: Ricardo Ramirez-Gonzalez, Raoul Jean Pierre Bonnal, Mario Cáccamo, Daniel MacLean - Open Research Computation, Source Code Biol. Medicine 2012 cited by 107
- Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways
Authors: Adrian P. Brown, J. Kroon, David Swarbreck, Melanie Febrer, Tony R. Larson, Ian A. Graham, Mario Cáccamo, Antoni R. Slabas - PLoS ONE 2012 cited by 188
- Metagenomic study of the viruses of African straw-coloured fruit bats: Detection of a chiropteran poxvirus and isolation of a novel adenovirus
Authors: Kate S. Baker, Richard M. Leggett, Nick Bexfield, Mark Alston, Gordon Daly, Shawn Todd, Mary Tachedjian, Clare Holmes, Sandra Crameri, Lin‐Fa Wang, Jonathan L. Heeney, Richard Suu‐Ire, Paul Kellam, Andrew A. Cunningham, James L. N. Wood, Mario Cáccamo, Pablo R. Murcia - Virology 2013 cited by 150
