Gerald J. Berry
Active 1988–2025
- 143
- Papers
- 30,384
- Citations
- 92
- h-index
- 136
- i10-index
Citations
Citation sources
Countries
Institutions
- Stanford University1.3%
- Harvard University1%
- Brigham and Women's Hospital0.7%
- Inserm0.6%
- Johns Hopkins University0.5%
- Massachusetts General Hospital0.5%
- Other95.4%
Fields
- Medicine62.9%
- Biochemistry, Genetics and Molecular Biology13%
- Immunology and Microbiology10.6%
- Computer Science7.4%
- Materials Science1.8%
- Engineering1%
- Other3.3%
Topics
- Transplantation: Methods and Outcomes4.9%
- Radiomics and Machine Learning in Medical Imaging3.9%
- AI in cancer detection3.7%
- Renal Transplantation Outcomes and Treatments3.4%
- Immune Cell Function and Interaction2.7%
- Asthma and respiratory diseases2.3%
- Other79.1%
Coauthors
- Cornelia M. Weyand25
- Jörg J. Goronzy24
- Charles C. Marboe23
- Moon Kyoo Jang14
- Sean Agbor-Enoh14
- Ryu Watanabe12
- Dale T. Umetsu11
- Hyesik Kong11
- Rosemarie H. DeKruyff11
- Hannah A. Valantine10
- Hui Zhang10
- James Theodore9
- Henry D. Tazelaar8
- Palak Shah8
- Annalisa Angelini7
- Daniel L. Rubin7
- Margaret Burke7
- Robert C. Robbins7
- Samer S. Najjar7
- Steven D. Nathan7
- Steven Hsu7
- Christopher Ré6
- Desley Neil6
- Jonathan B. Orens6
All papers
- Integrating genomic features for non-invasive early lung cancer detection
Authors: Jacob J. Chabon, Emily G. Hamilton, David M. Kurtz, Mohammad Shahrokh Esfahani, Everett J. Moding, Henning Stehr, Joseph G. Schroers‐Martin, Barzin Y. Nabet, Binbin Chen, Aadel A. Chaudhuri, Chih Long Liu, Angela BY Hui, Michael C. Jin, Tej D. Azad, Diego Almanza, Young-Jun Jeon, Monica Nesselbush, Lyron Co Ting Keh, Rene F. Bonilla, Christopher H. Yoo, Ryan B. Ko, Emily Chen, David J. Merriott, Pierre P. Massion, Aaron S. Mansfield, Jin Jen, Hong Ren, Steven H. Lin, Christina L. Costantino, Risa Burr, Robert Tibshirani, Sanjiv S. Gambhir, Gerald J. Berry, Kristin C. Jensen, Robert B. West, Joel W. Neal, Heather A. Wakelee, Billy W. Loo, Christian A. Kunder, Ann N. Leung, Natalie S. Lui, Mark F. Berry, Joseph B. Shrager, Viswam S. Nair, Daniel A. Haber, Lecia V. Sequist, Ash A. Alizadeh, Maximilian Diehn - Nature 2020 cited by 703
- Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features
Authors: Kun‐Hsing Yu, Ce Zhang, Gerald J. Berry, Russ B. Altman, Christopher Ré, Daniel L. Rubin, M Snyder - Nature Communications 2016 cited by 1,013
- Deep learning model for the prediction of microsatellite instability in colorectal cancer: a diagnostic study
Authors: Rikiya Yamashita, Jin Long, Teri A. Longacre, Lan Peng, Gerald J. Berry, Brock A. Martin, John Higgins, Daniel L. Rubin, Jeanne Shen - The Lancet Oncology 2020 cited by 379
- Impact of a deep learning assistant on the histopathologic classification of liver cancer
Authors: Amirhossein Kiani, Bora Uyumazturk, Pranav Rajpurkar, Alex Wang, Rebecca Gao, Erik Jones, Yifan Yu, Curtis P. Langlotz, Robyn L. Ball, Thomas J. Montine, Brock A. Martin, Gerald J. Berry, Michael G. Ozawa, Florette K. Hazard, Ryanne A. Brown, Simon B. Chen, Mona Wood, Libby S. Allard, Lourdes Ylagan, Andrew Y. Ng, Jeanne Shen - npj Digital Medicine, npj Digit. Medicine 2020 cited by 309
- Revision of the 1996 Working Formulation for the Standardization of Nomenclature in the Diagnosis of Lung Rejection
Authors: Susan Stewart, Michael C. Fishbein, Gregory I. Snell, Gerald J. Berry, Annette Boehler, Margaret Burke, Alan Glanville, F.K. Gould, Cynthia M. Magro, Charles C. Marboe, Keith McNeil, Elaine F. Reed, Nancy L. Reinsmoen, James G. Scott, Sean Studer, Henry D. Tazelaar, J. Wallwork, Glen Westall, Martin R. Zamora, Adriana Zeevi, Samuel A. Yousem - The Journal of Heart and Lung Transplantation 2007 cited by 2,444
- Cell-Free DNA to Detect Heart Allograft Acute Rejection
Authors: Sean Agbor-Enoh, Palak Shah, Ilker Tunc, Steven Hsu, Stuart Russell, Erika Feller, Keyur Shah, Maria E. Rodrigo, Samer S. Najjar, Hyesik Kong, Mehdi Pirooznia, Ulgen Fideli, Alfiya Bikineyeva, Argit Marishta, Kenneth Bhatti, Yanqin Yang, Cedric Mutebi, Kai Yu, Moon Kyoo Jang, Charles Marboe, Gerald J. Berry, Hannah A. Valantine, For the GRAfT Investigators - Circulation 2021 cited by 276
- Revision of the 1990 Working Formulation for the Standardization of Nomenclature in the Diagnosis of Heart Rejection
Authors: Susan Stewart, Gayle L. Winters, Michael C. Fishbein, Henry D. Tazelaar, Jon Kobashigawa, Jacki Abrams, Claus B. Andersen, Annalisa Angelini, Gerald J. Berry, Margaret Burke, Anthony J. Demetris, Elizabeth Hammond, Silviu Itescu, Charles C. Marboe, Bruce M. McManus, Elaine F. Reed, Nancy L. Reinsmoen, E. René Rodríguez, Alan G. Rose, Marlene L. Rose, Nicole Suciu-Focia, Adriana Zeevi, Margaret E. Billingham - The Journal of Heart and Lung Transplantation 2005 cited by 1,782
- The DNA Repair Nuclease MRE11A Functions as a Mitochondrial Protector and Prevents T Cell Pyroptosis and Tissue Inflammation
Authors: Yinyin Li, Yi Shen, Ke Jin, Zhenke Wen, Wenqiang Cao, Bowen Wu, Ru Wen, Lü Tian, Gerald J. Berry, Jörg J. Goronzy, Cornelia M. Weyand - Cell Metabolism 2019 cited by 180
- A molecular cell atlas of the human lung from single cell RNA sequencing
Authors: Kyle J. Travaglini, Ahmad N. Nabhan, Lolita Penland, Rahul Sinha, Astrid Gillich, Rene Sit, Stephen Chang, Stephanie D. Conley, Yasuo Mori, Jun Seita, Gerald J. Berry, Joseph B. Shrager, Ross J. Metzger, Christin S. Kuo, Norma Neff, Irving L. Weissman, Stephen R. Quake, Mark A. Krasnow - Nature 2019 cited by 1,872
- Stem-like CD4 + T cells in perivascular tertiary lymphoid structures sustain autoimmune vasculitis
Authors: Yuki Sato, Abhinav Jain, Shozo Ohtsuki, Hirohisa Okuyama, Ines Sturmlechner, Yoshinori Takashima, Kevin Le, Melanie C. Bois, Gerald J. Berry, Kenneth J. Warrington, Jörg J. Goronzy, Cornelia M. Weyand - Science Translational Medicine 2023 cited by 60
- The 2013 International Society for Heart and Lung Transplantation Working Formulation for the standardization of nomenclature in the pathologic diagnosis of antibody-mediated rejection in heart transplantation
Authors: Gerald J. Berry, Margaret Burke, Claus B. Andersen, Patrick Bruneval, Marny Fedrigo, Michael C. Fishbein, Martin Goddard, Elizabeth H. Hammond, Ornella Leone, Charles C. Marboe, Dylan Miller, Desley Neil, Doris M. Rassl, Mónica P. Revelo, Alexandra Rice, E. René Rodríguez, Susan Stewart, Carmela D. Tan, Gayle L. Winters, Lori J. West, Mandeep R. Mehra, Annalisa Angelini - The Journal of Heart and Lung Transplantation 2013 cited by 580
- Metabolic Control of Autoimmunity and Tissue Inflammation in Rheumatoid Arthritis
Authors: Jingtao Qiu, Bowen Wu, Stuart B. Goodman, Gerald J. Berry, Jörg J. Goronzy, Cornelia M. Weyand - Frontiers in Immunology 2021 cited by 158
- Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery
Authors: Shin‐Heng Chiou, Diane Tseng, Alexandre Reuben, Vamsee Mallajosyula, Irene S. Molina, Stephanie D. Conley, Julie Wilhelmy, Alana M. McSween, Xinbo Yang, Daisuke Nishimiya, Rahul Sinha, Barzin Y. Nabet, Chunlin Wang, Joseph B. Shrager, Mark F. Berry, Leah M. Backhus, Natalie S. Lui, Heather A. Wakelee, Joel W. Neal, Sukhmani K. Padda, Gerald J. Berry, Alberto Delaidelli, Poul H. Sorensen, Elena Sotillo, Patrick Tran, Jalen Benson, Rebecca M. Richards, Louai Labanieh, Dorota D. Klysz, David M. Louis, Steven A. Feldman, Maximilian Diehn, Irving L. Weissman, Jianjun Zhang, Ignacio I. Wistuba, P. Andrew Futreal, John V. Heymach, K. Christopher García, Crystal L. Mackall, Mark M. Davis - Immunity 2021 cited by 136
- Antibody-mediated rejection of the lung: A consensus report of the International Society for Heart and Lung Transplantation
Authors: Deborah J. Levine, Allan R. Glanville, Christina Aboyoun, John A. Belperio, Christian Benden, Gerald J. Berry, Ramsey R. Hachem, Don Hayes, Desley Neil, Nancy L. Reinsmoen, Laurie D. Snyder, Stuart C. Sweet, Dolly B. Tyan, Geert M. Verleden, Glen Westall, Roger D. Yusen, Martin R. Zamora, Adriana Zeevi - The Journal of Heart and Lung Transplantation 2016 cited by 486
- Immunoinhibitory checkpoint deficiency in medium and large vessel vasculitis
Authors: Hui Zhang, Ryu Watanabe, Gerald J. Berry, Augusto Vaglio, Yaping Joyce Liao, Kenneth J. Warrington, Jörg J. Goronzy, Cornelia M. Weyand - National Academy of Sciences, Proceedings of the National Academy of Sciences 2017 cited by 242
- 2011 Consensus statement on endomyocardial biopsy from the Association for European Cardiovascular Pathology and the Society for Cardiovascular Pathology
Authors: Ornella Leone, John P. Veinot, Annalisa Angelini, Ulrik Baandrup, Cristina Basso, Gerald J. Berry, Patrick Bruneval, Margaret Burke, Jagdish Butany, Fiorella Calabrese, Giulia d’Amati, William D. Edwards, John T. Fallon, Michael C. Fishbein, Patrick J. Gallagher, Marc K. Halushka, Bruce M. McManus, Angela Pucci, E. René Rodríguez, Jeffrey E. Saffitz, Mary N. Sheppard, Charles Steenbergen, James R. Stone, Carmela D. Tan, Gaetano Thiene, Allard C. van der Wal, Gayle L. Winters - Cardiovascular Pathology 2011 cited by 528
- Inhibition of JAK-STAT Signaling Suppresses Pathogenic Immune Responses in Medium and Large Vessel Vasculitis
Authors: Hui Zhang, Ryu Watanabe, Gerald J. Berry, Lü Tian, Jörg J. Goronzy, Cornelia M. Weyand - Circulation 2017 cited by 219
- Concordance Among Pathologists in the Second Cardiac Allograft Rejection Gene Expression Observational Study (CARGO II)
Authors: María G. Crespo‐Leiro, Andreas Zuckermann, Christoph Bara, Paul Mohaçsi, Uwe Schulz, Andrew Boyle, Heather J. Ross, Jayan Parameshwar, Michał Zakliczyńśki, R. Fiocchi, Joerg Stypmann, Daniel Hoefer, H. Lehmkuhl, Mario C. Deng, Pascal Leprince, Gerald J. Berry, Charles C. Marboe, Susan Stewart, Henry D. Tazelaar, Helen Baron, Ian-Charles Coleman, Johan Vanhaecke - Transplantation 2012 cited by 188
- MMP (Matrix Metalloprotease)-9–Producing Monocytes Enable T Cells to Invade the Vessel Wall and Cause Vasculitis
Authors: Ryu Watanabe, Toshihisa Maeda, Hui Zhang, Gerald J. Berry, Markus Zeisbrich, Robert Brockett, Andrew E. Greenstein, Lü Tian, Jörg J. Goronzy, Cornelia M. Weyand - Circulation Research 2018 cited by 175
- Non–Small Cell Lung Cancer Radiogenomics Map Identifies Relationships between Molecular and Imaging Phenotypes with Prognostic Implications
Authors: Mu Zhou, Ann N. Leung, Sebastian Echegaray, Andrew J. Gentles, Joseph B. Shrager, Kristin C. Jensen, Gerald J. Berry, Sylvia K. Plevritis, Daniel L. Rubin, Sandy Napel, Olivier Gevaert - Radiology 2017 cited by 193
- Donor-derived cell-free DNA predicts allograft failure and mortality after lung transplantation
Authors: Sean Agbor-Enoh, Yan Wang, Ilker Tunc, Moon Kyoo Jang, Andrew A. Davis, Iwijn De Vlaminck, Helen Luikart, Pali D. Shah, I. Timofte, Anne Brown, A. Marishta, K. Bhatti, S. Gorham, U. Fideli, Jennifer Wylie, David R. Grimm, Natalie Goodwin, Yanqin Yang, K. Patel, Jun Zhu, Aldo Iacono, Jonathan B. Orens, Steven D. Nathan, Charles C. Marboe, Gerald J. Berry, Stephen R. Quake, Kiran K. Khush, Hannah A. Valantine - EBioMedicine 2019 cited by 150
- Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks
Authors: Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane - Journal of the American Medical Informatics Association, J. Am. Medical Informatics Assoc. 2020 cited by 122
- Donor-derived cell-free DNA accurately detects acute rejection in lung transplant patients, a multicenter cohort study
Authors: Moon Kyoo Jang, Ilker Tunc, Gerald J. Berry, Charles C. Marboe, Hyesik Kong, Michael B. Keller, Pali D. Shah, I. Timofte, Anne Brown, Ileana L. Ponor, Cedric Mutebi, Mary Carmelle Philogene, Kai Yu, Aldo Iacono, Jonathan B. Orens, Steven D. Nathan, Sean Agbor-Enoh - The Journal of Heart and Lung Transplantation 2021 cited by 92
- Idiopathic Giant-Cell Myocarditis — Natural History and Treatment
Authors: Leslie T. Cooper, Gerald J. Berry, Ralph Shabetai - New England Journal of Medicine 1997 cited by 755
