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Hiroki R. Ueda

Active 1998–2025

102
Papers
18,182
Citations
72
h-index
98
i10-index

Citations

Citations per year for Hiroki R. Ueda1980: 1 citations1990: 1 citations1997: 2 citations2000: 4 citations2001: 11 citations2002: 26 citations2003: 54 citations2004: 79 citations2005: 66 citations2006: 89 citations2007: 120 citations2008: 125 citations2009: 138 citations2010: 164 citations2011: 170 citations2012: 189 citations2013: 169 citations2014: 201 citations2015: 178 citations2016: 195 citations2017: 169 citations2018: 220 citations2019: 589 citations2020: 749 citations2021: 850 citations2022: 600 citations2023: 456 citations2024: 803 citations2025: 336 citations2026: 14 citations1981–1989: no citations, so these years are not shown1991–1996: no citations, so these years are not shown1998–1999: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,110 citing papers, 27.2% of this breakdownChina: 842 citing papers, 10.9% of this breakdownJapan: 805 citing papers, 10.4% of this breakdownUnited Kingdom: 554 citing papers, 7.1% of this breakdownGermany: 495 citing papers, 6.4% of this breakdownFrance: 283 citing papers, 3.7% of this breakdownSwitzerland: 247 citing papers, 3.2% of this breakdownCanada: 212 citing papers, 2.7% of this breakdownItaly: 184 citing papers, 2.4% of this breakdownAustralia: 163 citing papers, 2.1% of this breakdownSpain: 158 citing papers, 2% of this breakdownSouth Korea: 156 citing papers, 2% of this breakdown
0%27.2%Other 19.9%

Institutions

Fields

  • Neuroscience33.5%
  • Biochemistry, Genetics and Molecular Biology32.9%
  • Medicine16.8%
  • Engineering4.5%
  • Computer Science3.9%
  • Agricultural and Biological Sciences2.2%
  • Other6.2%

Topics

  • Circadian rhythm and melatonin8.9%
  • Light effects on plants2.8%
  • Single-cell and spatial transcriptomics2.5%
  • Advanced Fluorescence Microscopy Techniques2.5%
  • Cell Image Analysis Techniques2.4%
  • Epigenetics and DNA Methylation2%
  • Other78.9%

Coauthors

All papers

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  1. SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery

    Authors: Shion Honda, Shoi Shi, Hiroki R. Ueda - arXiv (Cornell University), CoRR 2019 cited by 166

  2. Tissue clearing and its applications in neuroscience

    Authors: Hiroki R. Ueda, Ali Ertürk, Kwanghun Chung, Viviana Gradinaru, Alain Chédotal, Pavel Tomančák, Philipp Keller - Nature reviews. Neuroscience 2020 cited by 632

  3. Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis

    Authors: Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M. Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi, Takaya Abe, Hiroshi Kiyonari, Yoshihiro Shimizu, Atsushi Miyawaki, Hideo Yokota, Hiroki R. Ueda - Cell 2014 cited by 1,405

  4. Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging

    Authors: Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Hiroko Yukinaga, Akihiro Kuno, Hiroki R. Ueda - Nature Protocols 2015 cited by 863

  5. Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16high Cells In Vivo

    Authors: Satotaka Omori, Teh-Wei Wang, Yoshikazu Johmura, Tomomi Kanai, Yasuhiro Nakano, Taketomo Kido, Etsuo A. Susaki, Takuya Nakajima, Shigeyuki Shichino, Satoshi Ueha, Manabu Ozawa, Kisho Yokote, Soichiro Kumamoto, Atsuya Nishiyama, Takeharu Sakamoto, Kiyoshi Yamaguchi, Seira Hatakeyama, Eigo Shimizu, Kotoe Katayama, Yasuhiro Yamada, Satoshi Yamazaki, Kanako Iwasaki, Chika Miyoshi, Hiromasa Funato, Masashi Yanagisawa, Hiroo Ueno, Seiya Imoto, Yoichi Furukawa, Nobuaki Yoshida, Kouji Matsushima, Hiroki R. Ueda, Atsushi Miyajima, Makoto Nakanishi - Cell Metabolism 2020 cited by 194

  6. Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues

    Authors: Etsuo A. Susaki, Chika Shimizu, Akihiro Kuno, Kazuki Tainaka, Xiang Li, Kengo Nishi, Ken Morishima, H. Ono, Koji L. Ode, Yuki Saeki, Kazunari Miyamichi, Kaoru Isa, Chihiro Yokoyama, Hiroki Kitaura, Masako Ikemura, Tetsuo Ushiku, Yoshihiro Shimizu, Takashi Saito, Takaomi C. Saido, Masashi Fukayama, Hirotaka Onoe, Kazushige Touhara, Tadashi Isa, Akiyoshi Kakita, Mitsuhiro Shibayama, Hiroki R. Ueda - Nature Communications 2020 cited by 318

  7. A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues

    Authors: Adam K. Glaser, Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao, Robert Serafin, Pooja Balaram, Emily Turschak, Philip R. Nicovich, Hoyin Lai, Luciano Lucas, Yating Yi, Eva K. Nichols, Hongyi Huang, Nicholas P. Reder, Jasmine Wilson, Ramya Sivakumar, Elya A. Shamskhou, Caleb Stoltzfus, Xing Wei, Andrew K Hempton, Marko Pende, Prayag Murawala, Hans‐Ulrich Dodt, Takato Imaizumi, Jay Shendure, Brian J. Beliveau, Michael Y. Gerner, Xin Li, Hu Zhao, Lawrence D. True, R. Clay Reid, Jayaram Chandrashekar, Hiroki R. Ueda, Karel Svoboda, Jonathan Liu - Nature Methods 2022 cited by 177

  8. Tissue clearing

    Authors: Douglas S. Richardson, Webster Guan, Katsuhiko Matsumoto, Chenchen Pan, Kwanghun Chung, Ali Ertürk, Hiroki R. Ueda, Jeff W. Lichtman - Nature Reviews Methods Primers 2021 cited by 189

  9. Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents

    Authors: Kazuki Tainaka, Tatsuya C. Murakami, Etsuo A. Susaki, Chika Shimizu, Rie Saito, Kei Takahashi, Akiko Hayashi‐Takagi, Hiroshi Sekiya, Yasunobu Arima, Satoshi Nojima, Masako Ikemura, Tetsuo Ushiku, Yoshihiro Shimizu, Masaaki Murakami, Kenji F. Tanaka, Masamitsu Iino, Haruo Kasai, Toshikuni Sasaoka, Kazuto Kobayashi, Kohei Miyazono, Eiichi Morii, Tadashi Isa, Masashi Fukayama, Akiyoshi Kakita, Hiroki R. Ueda - Cell Reports 2018 cited by 363

  10. Advanced CUBIC tissue clearing for whole-organ cell profiling

    Authors: Katsuhiko Matsumoto, Tomoki T. Mitani, Shuhei A. Horiguchi, Junichi Kaneshiro, Tatsuya C. Murakami, Tomoyuki Mano, Hiroshi Fujishima, Ayumu Konno, Tomonobu M. Watanabe, Hirokazu Hirai, Hiroki R. Ueda - Nature Protocols 2019 cited by 285

  11. A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing

    Authors: Tatsuya C. Murakami, Tomoyuki Mano, Shu Saikawa, Shuhei A. Horiguchi, Daichi Shigeta, Kousuke Baba, Hiroshi Sekiya, Yoshihiro Shimizu, Kenji F. Tanaka, Hiroshi Kiyonari, Masamitsu Iino, Hideki Mochizuki, Kazuki Tainaka, Hiroki R. Ueda - Nature Neuroscience 2018 cited by 307

  12. System-level identification of transcriptional circuits underlying mammalian circadian clocks

    Authors: Hiroki R. Ueda, Satoko Hayashi, Wenbin Chen, Motoaki Sano, Masayuki Machida, Yasufumi Shigeyoshi, Masamitsu Iino, Seiichi Hashimoto - Nature Genetics 2005 cited by 800

  13. Guidelines for Genome-Scale Analysis of Biological Rhythms

    Authors: Michael E. Hughes, Katharine C. Abruzzi, Ravi Allada, Ron C. Anafi, Alaaddin Bulak Arpat, Gad Asher, Pierre Baldi, Charissa de Bekker, Deborah Bell‐Pedersen, Justin Blau, Steven R. Brown, M. Fernanda Ceriani, Zheng Chen, Joanna C. Chiu, Jüergen Cox, Alexander M. Crowell, Jason P. DeBruyne, Derk‐Jan Dijk, Luciano DiTacchio, Francis J. Doyle, Giles E. Duffield, Jay Dunlap, Kristin Eckel‐Mahan, Karyn A. Esser, Garret A. FitzGerald, Daniel B. Forger, Lauren J. Francey, Ying‐Hui Fu, Frédéric Gachon, David Gatfield, Paul de Goede, Susan S. Golden, Carla A. Green, John Harer, Stacey L. Harmer, Jeff Haspel, Michael H. Hastings, Hanspeter Herzel, Erik D. Herzog, Christy M. Hoffmann, Christian I. Hong, Jacob Hughey, Jennifer Hurley, Horacio O. de la Iglesia, Carl Hirschie Johnson, Steve A. Kay, Nobuya Koike, Karl Kornacker, Achim Kramer, Katja Lamia, Tanya Leise, Scott A. Lewis, Jiajia Li, Xiaodong Li, Andrew C. Liu, Jennifer Loros, Tami A. Martino, Jérôme S. Menet, Martha Merrow, Andrew J. Millar, Todd C. Mockler, Félix Naef, Emi Nagoshi, Michael N. Nitabach, María Olmedo, Dmitri A. Nusinow, Louis J. Ptáček, D.A.J. Rand, Akhilesh B. Reddy, María S. Robles, Till Roenneberg, Michael Rosbash, Marc D. Ruben, Samuel S. C. Rund, Aziz Sancar, Paolo Sassone‐Corsi, Amita Sehgal, Scott Sherrill-Mix, Debra J. Skene, Kai‐Florian Storch, Joseph S. Takahashi, Hiroki R. Ueda, Han Wang, Charles J. Weitz, Pål O. Westermark, Herman Wijnen, Ying Xu, Gang Wu, Seung Hee Yoo, Michael W. Young, Eric Erquan Zhang, T. Zieliński, John B. Hogenesch - Journal of Biological Rhythms 2017 cited by 303

  14. Ubiquitination of phosphatidylethanolamine in organellar membranes

    Authors: Jun-Ichi Sakamaki, Koji L. Ode, Yoshitaka Kurikawa, Hiroki R. Ueda, Hayashi Yamamoto, Noboru Mizushima - Molecular Cell 2022 cited by 80

  15. Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy

    Authors: Hiroki R. Ueda, Hans‐Ulrich Dodt, Pavel Osten, Michael N. Economo, Jayaram Chandrashekar, Philipp Keller - Neuron 2020 cited by 228

  16. Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

    Authors: Yohei Sasagawa, Itoshi Nikaido, Tetsutaro Hayashi, Hiroki Danno, Kenichiro D. Uno, Takeshi Imai, Hiroki R. Ueda - Genome biology 2013 cited by 480

  17. Maintenance of self‐renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b

    Authors: Akiko Tsumura, Tomohiro Hayakawa, Yuichi Kumaki, Shin‐ichiro Takebayashi, Morito Sakaue, Chisa Matsuoka, Kunitada Shimotohno, Fuyuki Ishikawa, En Li, Hiroki R. Ueda, Jun‐ichi Nakayama, Masaki Okano - Genes to Cells 2006 cited by 557

  18. Activation of Sympathetic Signaling in Macrophages Blocks Systemic Inflammation and Protects against Renal Ischemia-Reperfusion Injury

    Authors: S. Hasegawa, Tsuyoshi Inoue, Yasuna Nakamura, Daichi Fukaya, Rie Uni, Chia-Hsien Wu, Rie Fujii, Wachirasek Peerapanyasut, Akashi Taguchi, Takahide Kohro, Shintaro Yamada, Mikako Katagiri, Toshiyuki Ko, Seitaro Nomura, Atsuko Ozeki, Etsuo A. Susaki, Hiroki R. Ueda, Nobuyoshi Akimitsu, Youichiro Wada, Issei Komuro, Masaomi Nangaku, Reiko Inagi - Journal of the American Society of Nephrology 2021 cited by 60

  19. Involvement of Ca2+-Dependent Hyperpolarization in Sleep Duration in Mammals

    Authors: Fumiya Tatsuki, Genshiro A. Sunagawa, Shoi Shi, Etsuo A. Susaki, Hiroko Yukinaga, Dimitri Perrin, Kenta Sumiyama, Maki Ukai‐Tadenuma, Hiroshi Fujishima, Rei-ichiro Ohno, Daisuke Tone, Koji L. Ode, Katsuhiko Matsumoto, Hiroki R. Ueda - Neuron 2016 cited by 208

  20. The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes

    Authors: Machiko Katori, Shoi Shi, Koji L. Ode, Yasuhiro Tomita, Hiroki R. Ueda - National Academy of Sciences, Proceedings of the National Academy of Sciences 2022 cited by 81

  21. Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling

    Authors: Kazuki Tainaka, Akihiro Kuno, Shimpei I. Kubota, Tatsuya C. Murakami, Hiroki R. Ueda - Annual Review of Cell and Developmental Biology 2016 cited by 288

  22. NEK9 regulates primary cilia formation by acting as a selective autophagy adaptor for MYH9/myosin IIA

    Authors: Yasuhiro Yamamoto, Haruka Chino, Satoshi Tsukamoto, Koji L. Ode, Hiroki R. Ueda, Noboru Mizushima - Nature Communications 2021 cited by 67

  23. A transcription factor response element for gene expression during circadian night

    Authors: Hiroki R. Ueda, Wenbin Chen, Akihito Adachi, Hisanori Wakamatsu, Satoko Hayashi, Tomohiro Takasugi, Mamoru Nagano, Ken‐ichi Nakahama, Yutaka Suzuki, Sumio Sugano, Masamitsu Iino, Yasufumi Shigeyoshi, Seiichi Hashimoto - Nature 2002 cited by 872

  24. Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals

    Authors: Etsuo A. Susaki, Hiroki R. Ueda - Cell chemical biology 2016 cited by 301