J. Chris Pires
Active 2002–2024
- Also published as
- J Chris Pires
- 105
- Papers
- 24,955
- Citations
- 78
- h-index
- 104
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology46.5%
- Agricultural and Biological Sciences45.7%
- Medicine2%
- Environmental Science1.6%
- Nursing1.3%
- Earth and Planetary Sciences0.6%
- Other2.3%
Topics
- Chromosomal and Genetic Variations9%
- Genomics and Phylogenetic Studies8%
- Plant Molecular Biology Research4.7%
- Genetic diversity and population structure4.2%
- Photosynthetic Processes and Mechanisms4%
- Plant Reproductive Biology3.4%
- Other66.7%
Coauthors
- Patrick P. Edger37
- Gavin C. Conant16
- Hong An13
- M. Eric Schranz12
- Michael R. McKain12
- Claude W. dePamphilis10
- Michael S. Barker9
- Pamela S. Soltis9
- Zhiyong Xiong9
- Dennis Wm. Stevenson8
- Makenzie E. Mabry8
- Sean W. Graham8
- Haibao Tang7
- Jerrold I. Davis7
- Jim Leebens‐Mack7
- Jocelyn C. Hall7
- Kenneth J. Sytsma7
- Thomas J. Givnish7
- Annaliese S. Mason6
- Craig F. Barrett6
- Joel R. McNeal6
- Kevin A. Bird6
- Mark W. Chase6
- Saravanaraj Ayyampalayam6
All papers
- Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Authors: Boulos Chalhoub, France Denœud, Shengyi Liu, Isobel A. P. Parkin, Haibao Tang, Xiyin Wang, Julien Chiquet, Harry Belcram, Chaobo Tong, Birgit Samans, Margot Corréa, Corinne Da Silva, Jérémy Just, Cyril Falentin, ChuShin Koh, Isabelle Le Clainche, Maria Bernard, Pascal Bento, Benjamin Noël, Karine Labadie, Adriana Alberti, Mathieu Charles, Dominique Arnaud, Hui Guo, Christian Daviaud, Salman Alamery, Kamel Jabbari, Meixia Zhao, Patrick P. Edger, Houda Chelaifa, David C. Tack, Gilles Lassalle, Imen Mestiri, Nicolas Schnel, Marie‐Christine Le Paslier, Guangyi Fan, Victor Renault, Philipp E. Bayer, Agnieszka A. Golicz, Sahana Manoli, Tae‐Ho Lee, Vinh Ha Thi, Smahane Chalabi, Qiong Hu, Chuchuan Fan, Reece Tollenaere, Yun Lü, Christophe Battail, Jinxiong Shen, Christine Sidebottom, Xinfa Wang, Aurélie Canaguier, Aurélie Chauveau, Aurélie Berard, Gwenaëlle Deniot, Mei Guan, Zhongsong Liu, Fengming Sun, Yong Pyo Lim, Eric Lyons, Christopher D. Town, Ian Bancroft, Xiaowu Wang, Jinling Meng, Jianxin Ma, J. Chris Pires, Graham J.W. King, Dominique Brunel, Régine Delourme, Michel Renard, Jean‐Marc Aury, Keith L. Adams, Jacqueline Batley, Rod J. Snowdon, Jörg Tost, David Edwards, Yongming Zhou, Wei Hua, Andrew Sharpe, Andrew H. Paterson, Chunyun Guan, Patrick Wincker - Science 2014 cited by 2,621
- The pangenome of an agronomically important crop plant Brassica oleracea
Authors: Agnieszka A. Golicz, Philipp E. Bayer, Guy C. Barker, Patrick P. Edger, Hye Ran Kim, Paula Andrea Martinez, Chon‐Kit Kenneth Chan, Anita A. Severn‐Ellis, W. Richard McCombie, Isobel A. P. Parkin, Andrew H. Paterson, J. Chris Pires, Andrew Sharpe, Haibao Tang, Graham R. Teakle, Christopher D. Town, Jacqueline Batley, David Edwards - Nature Communications 2016 cited by 570
- The genome of the mesopolyploid crop species Brassica rapa
Authors: Xiaowu Wang, Hanzhong Wang, Jun Wang, Rifei Sun, Jian Wu, Shengyi Liu, Yinqi Bai, Jeong‐Hwan Mun, Ian Bancroft, Feng Cheng, Sanwen Huang, Xixiang Li, Wei Hua, Junyi Wang, Xiyin Wang, Michael Freeling, J. Chris Pires, Andrew H. Paterson, Boulos Chalhoub, Bo Wang, Alice Hayward, Andrew Sharpe, Beom‐Seok Park, Bernd Weißhaar, Binghang Liu, Bo Li, Bo Liu, Chaobo Tong, Chi Song, Christopher Duran, Chunfang Peng, Chunyu Geng, ChuShin Koh, Chuyu Lin, David Edwards, Desheng Mu, Di Shen, Eleni Soumpourou, Fei Li, F C Fraser, Gavin C. Conant, Gilles Lassalle, Graham J.W. King, Guusje Bonnema, Haibao Tang, Haiping Wang, Harry Belcram, Heling Zhou, Hideki Hirakawa, Hiroshi Abe, Hui Guo, Hui Wang, Huizhe Jin, Isobel A. P. Parkin, Jacqueline Batley, Jeong‐Sun Kim, Jérémy Just, Jianwen Li, Jiaohui Xü, Jie Deng, Jin A Kim, Jingping Li, Jingyin Yu, Jinling Meng, Jinpeng Wang, Jiumeng Min, Julie Poulain, Jun Wang, Katsunori Hatakeyama, Kui Wu, Li Wang, Fang Lü, Martin Trick, Matthew G. Links, Meixia Zhao, Mina Jin, Nirala Ramchiary, Nizar Drou, Paul J. Berkman, Qingle Cai, Quanfei Huang, Ruiqiang Li, Satoshi Tabata, Shifeng Cheng, Shu Zhang, Shujiang Zhang, Shunmou Huang, Shusei Sato, Silong Sun, Soo-Jin Kwon, Su-Ryun Choi, Tae‐Ho Lee, Wei Fan, Xiang Zhao, Xu Tan, Xun Xu, Yan Wang, Yang Qiu, Ye Yin, Yingrui Li and 10 more - Nature Genetics 2011 cited by 2,205
- The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
Authors: Shengyi Liu, Yumei Liu, Xinhua Yang, Chaobo Tong, David Edwards, Isobel A. P. Parkin, Meixia Zhao, Jianxin Ma, Jingyin Yu, Shunmou Huang, Xiyin Wang, Junyi Wang, Kun Lu, Zhiyuan Fang, Ian Bancroft, Tae‐Jin Yang, Qiong Hu, Xinfa Wang, Zhen Yue, Haojie Li, Linfeng Yang, Jian Wu, Qing Zhou, Wanxin Wang, Graham J.W. King, J. Chris Pires, Changxin Lu, Zhangyan Wu, Perumal Sampath, Zhuo Wang, Hui Guo, Shengkai Pan, Limei Yang, Jiumeng Min, Dong Zhang, Dianchuan Jin, Wanshun Li, Harry Belcram, Jinxing Tu, Mei Guan, QI Cun-kou, Dezhi Du, Jiana Li, Liangcai Jiang, Jacqueline Batley, Andrew Sharpe, Beom‐Seok Park, Pradeep Ruperao, Feng Cheng, Nomar Espinosa Waminal, Yin Huang, Caihua Dong, Li Wang, Jingping Li, Zhiyong Hu, Mu Zhuang, Yi Huang, Junyan Huang, Jiaqin Shi, Desheng Mei, Jing Liu, Tae‐Ho Lee, Jinpeng Wang, Huizhe Jin, Zaiyun Li, Xun Li, Jiefu Zhang, Lu Xiao, Yongming Zhou, Zhongsong Liu, Xuequn Liu, Rui Qin, Xu Tang, Wenbin Liu, Yupeng Wang, Yangyong Zhang, Jonghoon Lee, Hyun Hee Kim, France Denœud, Xun Xu, Xinming Liang, Wei Hua, Xiaowu Wang, Jun Wang, Boulos Chalhoub, Andrew H. Paterson - Nature Communications 2014 cited by 1,232
- A genome triplication associated with early diversification of the core eudicots
Authors: Yuannian Jiao, Jim Leebens‐Mack, Saravanaraj Ayyampalayam, John Bowers, Michael R. McKain, Joel R. McNeal, Megan Rolf, Daniel R. Ruzicka, Eric Wafula, Norman J. Wickett, Xiaolei Wu, Yong Zhang, Jun Wang, Yeting Zhang, Eric Carpenter, Michael K. Deyholos, Toni M. Kutchan, André S. Chanderbali, Pamela S. Soltis, Dennis Wm. Stevenson, W. Richard McCombie, J. Chris Pires, Gane Ka‐Shu Wong, Pamela S. Soltis, Claude W. dePamphilis - Genome biology 2012 cited by 560
- Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding
Authors: Jihong Hu, Biyun Chen, Jing Zhao, Fugui Zhang, Ting Xie, Kun Xu, Guizhen Gao, Guixin Yan, Hongge Li, Lixia Li, Gaoxiang Ji, Hong An, Hao Li, Qian Huang, Meili Zhang, Jinfeng Wu, Weilin Song, Xiaojun Zhang, Yujie Luo, J. Chris Pires, Jacqueline Batley, Shilin Tian, Xiaoming Wu - Nature Genetics 2022 cited by 159
- Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus
Authors: Bhavna Hurgobin, Agnieszka A. Golicz, Philipp E. Bayer, Chon‐Kit Kenneth Chan, Soodeh Tirnaz, Aria Dolatabadian, Sarah Schießl, Birgit Samans, Juan D. Montenegro, Isobel A. P. Parkin, J. Chris Pires, Boulos Chalhoub, Graham J.W. King, Rod J. Snowdon, Jacqueline Batley, David Edwards - Plant Biotechnology Journal 2017 cited by 290
- Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset
Authors: Kasper Hendriks, Christiane Kiefer, Ihsan A. Al‐Shehbaz, C. Donovan Bailey, Alexander Hooft van Huysduynen, Lachezar A. Nikolov, Lars Nauheimer, Alexandre R. Zuntini, Dmitry A. German, Andreas Franzke, Мarcus A. Koch, Martin A. Lysák, Óscar Toro‐Núñez, Barış Özüdoğru, Vanessa R. Invernón, Nora Walden, Olivier Maurin, Nikolai M. Hay, Philip Shushkov, Terezie Mandáková, M. Eric Schranz, Mats Thulin, Michael D. Windham, Ivana Rešetnik, Stanislav Španiel, Elfy Ly, J. Chris Pires, Alex Harkess, Barbara Neuffer, Robert Vogt, Christian Bräuchler, Heimo Rainer, Steven B. Janssens, Michaela Schmull, Alan Forrest, Alessia Guggisberg, Sue Zmarzty, Brendan J. Lepschi, Neville Scarlett, Fred W. Stauffer, Ines Schönberger, Peter B. Heenan, William J. Baker, Félix Forest, Klaus Mummenhoff, Frederic Lens - Current Biology 2023 cited by 128
- Current perspectives and the future of domestication studies
Authors: Greger Larson, Dolores R. Piperno, Robin G. Allaby, Michael D. Purugganan, Leif Andersson, Manuel Arroyo‐Kalin, Loukas Barton, Cynthia C. Vigueira, Tim Denham, Keith Dobney, Andrew N. Doust, Paul Gepts, M. Thomas P. Gilbert, Kristen J. Gremillion, Leilani Lucas, Lewis Lukens, Fiona Marshall, Kenneth M. Olsen, J. Chris Pires, Peter J. Richerson, Rafael Rubio de Casas, Oris I. Sanjur, Mark Thomas, Dorian Q. Fuller - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 cited by 877
- The butterfly plant arms-race escalated by gene and genome duplications
Authors: Patrick P. Edger, Hanna M. Heidel‐Fischer, Michaël Bekaert, Jadranka Rota, Gernot Glöckner, Adrian E. Platts, David G. Heckel, Joshua P. Der, Eric Wafula, Michelle Tang, Johannes A. Hofberger, Ann Smithson, Jocelyn C. Hall, Matthieu Blanchette, Thomas E. Bureau, Stephen Wright, Claude W. dePamphilis, M. Eric Schranz, Michael S. Barker, Gavin C. Conant, Niklas Wahlberg, Heiko Vogel, J. Chris Pires, Christopher W. Wheat - National Academy of Sciences, Proceedings of the National Academy of Sciences 2015 cited by 565
- Genomic insights into the origin, domestication and diversification of Brassica juncea
Authors: Lei Kang, Lunwen Qian, Ming Zheng, Liyang Chen, Hao Chen, Liu Yang, Liang You, Bin Yang, Mingli Yan, Yuanguo Gu, Tianyi Wang, Sarah Schießl, Hong An, Paul D. Blischak, Xianjun Liu, Hongfeng Lü, Dawei Zhang, Yong Rao, Donghai Jia, Dinggang Zhou, Huagui Xiao, Yonggang Wang, Xinghua Xiong, Annaliese S. Mason, J. Chris Pires, Rod J. Snowdon, Wei Hua, Zhongsong Liu - Nature Genetics 2021 cited by 172
- Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution
Authors: Chien‐Hsun Huang, Renran Sun, Yi Hu, Liping Zeng, Ning Zhang, Liming Cai, Qiang Zhang, Мarcus A. Koch, Ihsan A. Al‐Shehbaz, Patrick P. Edger, J. Chris Pires, Dunyan Tan, Yang Zhong, Hong Mā - Molecular Biology and Evolution 2015 cited by 352
- The asparagus genome sheds light on the origin and evolution of a young Y chromosome
Authors: Alex Harkess, Jinsong Zhou, Chunyan Xu, John E. Bowers, Ron van der Hulst, Saravanaraj Ayyampalayam, Francesco Mercati, Paolo Riccardi, Michael R. McKain, Atul Kakrana, Haibao Tang, Jeremy N. Ray, John Groenendijk, Siwaret Arikit, Sandra M. Mathioni, Mayumi Nakano, Hongyan Shan, Alexa Telgmann-Rauber, Akira Kanno, Zhen Yue, Haixin Chen, Wenqi Li, Yanling Chen, Xiangyang Xu, Yueping Zhang, Shaochun Luo, Helong Chen, Jianming Gao, Zichao Mao, J. Chris Pires, Meizhong Luo, Dave Kudrna, Rod A. Wing, Blake C. Meyers, Kexian Yi, Hongzhi Kong, Pierre Lavrijsen, Francesco Sunseri, Agostino Falavigna, Ye Yin, Jim Leebens‐Mack, Guangyu Chen - Nature Communications 2017 cited by 349
- Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi‐gene analyses, and a functional model for the origin of monocots
Authors: Thomas J. Givnish, Alejandro Zuluaga, Daniel Spalink, Marybel Soto Gomez, Vivienne K. Y. Lam, Jeffery M. Saarela, Chodon Sass, William J. D. Iles, Danilo José Lima de Sousa, James Leebens‐Mack, J. Chris Pires, Wendy B. Zomlefer, María A. Gandolfo, Jerrold I. Davis, Dennis Wm. Stevenson, Claude W. dePamphilis, Chelsea D. Specht, Sean W. Graham, Craig F. Barrett, Cécile Ané - American Journal of Botany 2018 cited by 283
- Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time
Authors: Gavin C. Conant, James A. Birchler, J. Chris Pires - Current Opinion in Plant Biology 2014 cited by 330
- Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus
Authors: Kevin A. Bird, Chad E. Niederhuth, Shujun Ou, Malia Gehan, J. Chris Pires, Zhiyong Xiong, Robert VanBuren, Patrick P. Edger - New Phytologist 2020 cited by 111
- The Evolutionary History of Wild, Domesticated, and Feral Brassica oleracea (Brassicaceae)
Authors: Makenzie E. Mabry, S. Turner, Evan Y. Gallagher, Alex C. McAlvay, Hong An, Patrick P. Edger, Jonathan D. Moore, David Pink, Graham R. Teakle, Chris J. Stevens, Guy C. Barker, Joanne A. Labate, Dorian Q. Fuller, Robin G. Allaby, Timothy Beissinger, Jared E. Decker, Michael A. Gore, J. Chris Pires - Molecular Biology and Evolution 2021 cited by 112
- Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids
Authors: Philipp E. Bayer, Armin Scheben, Agnieszka A. Golicz, Yuxuan Yuan, Sébastien Faure, HueyTyng Lee, Harmeet Singh Chawla, Robyn Anderson, Ian Bancroft, Harsh Raman, Yong Pyo Lim, Steven Robbens, Lixi Jiang, Shengyi Liu, Michael S. Barker, M. Eric Schranz, Xiaowu Wang, Graham J.W. King, J. Chris Pires, Boulos Chalhoub, Rod J. Snowdon, Jacqueline Batley, David Edwards - Plant Biotechnology Journal 2021 cited by 82
- Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower
Authors: Patrick P. Edger, Ronald D. Smith, Michael R. McKain, Arielle M. Cooley, Mario Vallejo‐Marín, Yao‐Wu Yuan, Adam J. Bewick, Lexiang Ji, Adrian E. Platts, Megan J. Bowman, Kevin L. Childs, Jacob D. Washburn, Robert J. Schmitz, Gregory D. Smith, J. Chris Pires, Joshua R. Puzey - The Plant Cell 2017 cited by 278
- Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective
Authors: Sontosh K. Deb, Patrick P. Edger, J. Chris Pires, Michael R. McKain - New Phytologist 2023 cited by 61
- Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
Authors: Isobel A. P. Parkin, ChuShin Koh, Haibao Tang, Stephen J. Robinson, Sateesh Kagale, Wayne E. Clarke, Chris Town, John Nixon, Vivek Krishnakumar, Shelby Bidwell, France Denœud, Harry Belcram, Matthew G. Links, Jérémy Just, Carling Clarke, Tricia Bender, Terry Huebert, Annaliese S. Mason, J Chris Pires, Guy C. Barker, Jonathan D. Moore, Peter Glen Walley, Sahana Manoli, Jacqueline Batley, David Edwards, Matthew N. Nelson, Xiyin Wang, Andrew H. Paterson, Graham J.W. King, Ian Bancroft, Boulos Chalhoub, Andrew Sharpe - Genome biology 2014 cited by 516
- Homoeologous recombination in allopolyploids: the polyploid ratchet
Authors: Robert T. Gaeta, J. Chris Pires - New Phytologist 2009 cited by 344
- Understanding mechanisms of novel gene expression in polyploids
Authors: T. C. Osborn, J. Chris Pires, James A. Birchler, Donald L. Auger, Z. Jeffery Chen, Hyeon‐Se Lee, Luca Comai, Andreas Madlung, R. W. Doerge, Vincent Colot, Robert A. Martienssen - Trends in Genetics 2003 cited by 921
- Are all sex chromosomes created equal?
Authors: Doris Bachtrog, Mark Kirkpatrick, Judith E. Mank, Stuart F. McDaniel, J. Chris Pires, William R. Rice, Nicole Valenzuela - Trends in Genetics 2011 cited by 366
