M. Thomas P. Gilbert
Active 1984–2025
- 268
- Papers
- 50,223
- Citations
- 125
- h-index
- 255
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology45.6%
- Environmental Science26.2%
- Agricultural and Biological Sciences9.4%
- Medicine6%
- Immunology and Microbiology2.8%
- Earth and Planetary Sciences2.6%
- Other7.4%
Topics
- Environmental DNA in Biodiversity Studies7.3%
- Genomics and Phylogenetic Studies6.8%
- Genetic diversity and population structure6.1%
- Identification and Quantification in Food5.1%
- Forensic and Genetic Research4%
- Microbial Community Ecology and Physiology3.9%
- Other66.8%
Coauthors
- Eske Willerslev69
- Guojie Zhang38
- Shyam Gopalakrishnan32
- Mikkel‐Holger S. Sinding29
- Ludovic Orlando26
- Morten Rasmussen25
- Thomas Sicheritz‐Pontén21
- Anders J. Hansen20
- James Haile20
- Michael Bunce19
- Jazmín Ramos‐Madrigal17
- Morten T. Limborg17
- Paula F. Campos17
- Simon Y. W. Ho17
- Antton Alberdi16
- Christian Carøe16
- Kristine Bohmann16
- Love Dalén16
- Michael D. Martin16
- Bent Petersen15
- Erich D. Jarvis15
- Anders Götherström14
- Enrico Cappellini14
- Filipe Garrett Vieira14
All papers
- Earth BioGenome Project: Sequencing life for the future of life
Authors: Harris A. Lewin, Gene E. Robinson, W. John Kress, William J. Baker, Jonathan A. Coddington, Keith A. Crandall, Richard Durbin, Scott V. Edwards, Félix Forest, M. Thomas P. Gilbert, Melissa M. Goldstein, Igor V. Grigoriev, Kevin J. Hackett, David Haussler, Erich D. Jarvis, Warren E. Johnson, A.A.N. Patrinos, Stephen Richards, Juan Carlos Castilla-Rubio, Marie‐Anne Van Sluys, Pamela S. Soltis, Xun Xu, Huanming Yang, Guojie Zhang - National Academy of Sciences, Proceedings of the National Academy of Sciences 2018 cited by 1,079
- The Earth BioGenome Project 2020: Starting the clock
Authors: Harris A. Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Miklós Bálint, Katharine Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark Blaxter, Jing Cai, Nicolette Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu‐Miaw Chaw, Lei Chen, Anna K. Childers, Jonathan A. Coddington, Dalia A. Conde, Montserrat Corominas, Keith A. Crandall, Andrew J. Crawford, Federica Di-Palma, Richard Durbin, ThankGod E. Ebenezer, Scott V. Edwards, Olivier Fédrigo, Paul Flicek, Giulio Formenti, Richard A. Gibbs, M. Thomas P. Gilbert, Melissa M. Goldstein, Jennifer A. Marshall Graves, Henry T. Greely, Igor V. Grigoriev, Kevin J. Hackett, Neil Hall, David Haussler, Kristofer M. Helgen, Carolyn J. Hogg, Sachiko Isobe, Kjetill S. Jakobsen, Axel Janke, Erich D. Jarvis, Warren E. Johnson, Steven J.M. Jones, Elinor K. Karlsson, Paul Kersey, Jin‐Hyoung Kim, W. John Kress, Shigehiro Kuraku, Mara Lawniczak, Jim Leebens‐Mack, Xueyan Li, Kerstin Lindblad‐Toh, Xin Liu, Jose V. Lopez, Tomàs Marquès‐Bonet, Sophie Mazard, Jonna A. K. Mazet, Camila J. Mazzoni, Eugene W. Myers, Rachel J. O’Neill, Sadye Paez, Hyun Park, Gene E. Robinson, Cristina Roquet, Oliver A. Ryder, Jamal S. M. Sabir, H. Bradley Shaffer, Timothy M. Shank, Jacob S. Sherkow, Pamela S. Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano‐Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L. Wilson, Xun Xu, Huanming Yang, Anne D. Yoder, Guojie Zhang - National Academy of Sciences, Proceedings of the National Academy of Sciences 2022 cited by 365
- Environmental DNA for wildlife biology and biodiversity monitoring
Authors: Kristine Bohmann, Alice Evans, M. Thomas P. Gilbert, Gary R. Carvalho, Simon Creer, Michael Knapp, Douglas W. Yu, Mark de Bruyn - Trends in Ecology & Evolution 2014 cited by 1,391
- Evolution of the germline mutation rate across vertebrates
Authors: Lucie A. Bergeron, Søren Besenbacher, Jiao Zheng, Panyi Li, Mads F. Bertelsen, Benoît Quintard, Joseph I. Hoffman, Zhipeng Li, Judy St. Leger, Changwei Shao, Josefin Stiller, M. Thomas P. Gilbert, Mikkel Heide Schierup, Guojie Zhang - Nature 2023 cited by 360
- How genomics can help biodiversity conservation
Authors: Kathrin Theißinger, Carlos Fernandes, Giulio Formenti, Iliana Bista, Paul R. Berg, Christoph Bleidorn, Aureliano Bombarely, Angelica Crottini, Guido Roberto Gallo, José A. Godoy, Sissel Jentoft, Joanna Malukiewicz, Alice Mouton, Rebekah A. Oomen, Sadye Paez, Per J. Palsbøll, Christophe Pampoulie, María José Ruiz‐López, Simona Secomandi, Hannes Svardal, Constantina Theofanopoulou, Jan de Vries, Ann‐Marie Waldvogel, Guojie Zhang, Erich D. Jarvis, Miklós Bálint, Claúdio Ciofi, Robert M. Waterhouse, Camila J. Mazzoni, Jacob Höglund, Sargis A. Aghayan, Tyler Alioto, Isabel Almudí, Nadir Álvarez, Paulo C. Alves, Isabel R. Amorim, Agostinho Antunes, Paula Arribas, Petr Baldrián, Giorgio Bertorelle, Astrid Böhne, Andrea Bonisoli‐Alquati, Ljudevit Luka Boštjančić, Bastien Boussau, Catherine Breton, Elena Bužan, Paula F. Campos, Carlos Carreras, L. Filipe C. Castro, Luis J. Chueca, Fedor Čiampor, Elena Conti, Robert Cook‐Deegan, Daniel Croll, Mónica V. Cunha, Frédéric Delsuc, Alice B. Dennis, Dimitar Dimitrov, Rui Faria, Adrien Favre, Olivier Fédrigo, Rosa Fernández, Gentile Francesco Ficetola, Jean‐François Flot, Toni Gabaldón, D. Agius, Alice Maria Giani, M. Thomas P. Gilbert, Tine Grebenc, Katerina Guschanski, Romain Guyot, Bernhard Hausdorf, Oliver Hawlitschek, Peter D. Heintzman, Berthold Heinze, Michael Hiller, Martin Husemann, Alessio Iannucci, Iker Irisarri, Kjetill S. Jakobsen, Peter Klinga, Agnieszka Kloch, Claudius F. Kratochwil, Henrik Kusche, Kara K S Layton, Jennifer A. Leonard, Emmanuelle Lerat, Gianni Liti, Tereza Manousaki, Tomàs Marquès‐Bonet, Pável Matos‐Maraví, Michael Matschiner, Florian Maumus, Ann M. Mc Cartney, Shai Meiri, José Melo‐Ferreira, Ximo Mengual, Michael T. Monaghan, Matteo Montagna, Robert W. Mysłajek and 33 more - Trends in Genetics 2023 cited by 400
- The era of reference genomes in conservation genomics
Authors: Giulio Formenti, Kathrin Theißinger, Carlos Fernandes, Iliana Bista, Aureliano Bombarely, Christoph Bleidorn, Claúdio Ciofi, Angelica Crottini, José A. Godoy, Jacob Höglund, Joanna Malukiewicz, Alice Mouton, Rebekah A. Oomen, Sadye Paez, Per J. Palsbøll, Christophe Pampoulie, María José Ruiz‐López, Hannes Svardal, Constantina Theofanopoulou, Jan de Vries, Ann‐Marie Waldvogel, Guojie Zhang, Camila J. Mazzoni, Erich D. Jarvis, Miklós Bálint, Giulio Formenti, Kathrin Theißinger, Carlos Fernandes, Iliana Bista, Aureliano Bombarely, Christoph Bleidorn, Fedor Čiampor, Claúdio Ciofi, Angelica Crottini, José A. Godoy, Jacob Höglund, Joanna Malukiewicz, Alice Mouton, Rebekah A. Oomen, Sadye Paez, Per J. Palsbøll, Christophe Pampoulie, María José Ruiz‐López, Hannes Svardal, Constantina Theofanopoulou, Jan de Vries, Ann‐Marie Waldvogel, Goujie Zhang, Camila J. Mazzoni, Erich D. Jarvis, Miklós Bálint, Sargis A. Aghayan, Tyler Alioto, Isabel Almudí, Nadir Álvarez, Paulo C. Alves, Isabel R. Amorim, Agostinho Antunes, Paula Arribas, Petr Baldrián, Paul R. Berg, Giorgio Bertorelle, Astrid Böhne, Andrea Bonisoli‐Alquati, Ljudevit Luka Boštjančić, Bastien Boussau, Catherine Breton, Elena Bužan, Paula F. Campos, Carlos Carreras, L. Filipe C. Castro, Luis J. Chueca, Elena Conti, Robert Cook‐Deegan, Daniel Croll, Mónica V. Cunha, Frédéric Delsuc, Alice B. Dennis, Dimitar Dimitrov, Rui Faria, Adrien Favre, Olivier Fédrigo, Rosa Fernández, Gentile Francesco Ficetola, Jean‐François Flot, Toni Gabaldón, D. Agius, Guido Roberto Gallo, Alice Maria Giani, M. Thomas P. Gilbert, Tine Grebenc, Katerina Guschanski, Romain Guyot, Bernhard Hausdorf, Oliver Hawlitschek, Peter D. Heintzman, Berthold Heinze, Michael Hiller, Martin Husemann, Alessio Iannucci and 58 more - Trends in Ecology & Evolution 2022 cited by 385
- Complexity of avian evolution revealed by family-level genomes
Authors: Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A. Duchêne, Qi Fang, Yuan Deng, Alexey M. Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M. T. Nguyen, Simon Y. W. Ho, Brant C. Faircloth, Julia Haag, Peter Houde, Joël Cracraft, Metin Balaban, Uyen Mai, Guangji Chen, Rongsheng Gao, Chengran Zhou, YuLong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A. Ogilvie, Luay Nakhleh, Bent Erik Kramer Lindow, Benoît Morel, Jon Fjeldså, Peter A. Hosner, Rute R. da Fonseca, Bent Petersen, Joseph A. Tobias, Tamás Székely, Jonathan D. Kennedy, Andrew Hart Reeve, András Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F. Bertelsen, Fumin Lei, Carsten Rahbek, Gary R. Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L. Braun, M. Thomas P. Gilbert, Erich D. Jarvis, Siavash Mirarab, Guojie Zhang - Nature 2024 cited by 279
- Monitoring endangered freshwater biodiversity using environmental DNA
Authors: Philip Francis Thomsen, Jos Kielgast, Lars Iversen, Carsten Wiuf, Morten Rasmussen, M. Thomas P. Gilbert, Ludovic Orlando, Eske Willerslev - Molecular Ecology 2011 cited by 1,212
- Scrutinizing key steps for reliable metabarcoding of environmental samples
Authors: Antton Alberdi, Ostaizka Aizpurua, M. Thomas P. Gilbert, Kristine Bohmann - Methods in Ecology and Evolution 2017 cited by 746
- Tag jumps illuminated – reducing sequence‐to‐sample misidentifications in metabarcoding studies
Authors: Ida Bærholm Schnell, Kristine Bohmann, M. Thomas P. Gilbert - Molecular Ecology Resources 2015 cited by 681
- Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
Authors: Lei Chen, Qiang Qiu, Yu Jiang, Kun Wang, Zeshan Lin, Zhipeng Li, Faysal Bibi, Yongzhi Yang, Jinhuan Wang, Wenhui Nie, Weiting Su, Guichun Liu, Qiye Li, Weiwei Fu, Xiangyu Pan, Chang Liu, Jie Yang, Chenzhou Zhang, Yuan Yin, Yu Wang, Yue Zhao, Chen Zhang, Zhongkai Wang, Yanli Qin, Wei Liu, Wang Bao, Yandong Ren, Ru Zhang, Yan Zeng, Rute R. da Fonseca, Bin Wei, Ran Li, Wenting Wan, Ruoping Zhao, Wenbo Zhu, Yutao Wang, Shengchang Duan, Yun Gao, Yong E. Zhang, Chunyan Chen, Christina Hvilsom, Clinton W. Epps, Leona G. Chemnick, Yang Dong, Siavash Mirarab, Hans R. Siegismund, Oliver A. Ryder, M. Thomas P. Gilbert, Harris A. Lewin, Guojie Zhang, Rasmus Heller, Wen Wang - Science 2019 cited by 481
- A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)
Authors: Jacob Agerbo Rasmussen, Kasper Rømer Villumsen, Madeleine Ernst, Martin Hansen, Torunn Forberg, Shyam Gopalakrishnan, M. Thomas P. Gilbert, Anders Miki Bojesen, Karsten Kristiansen, Morten T. Limborg - Microbiome 2022 cited by 209
- Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?
Authors: Antton Alberdi, Ostaizka Aizpurua, Kristine Bohmann, Marie Lisandra Zepeda Mendoza, M. Thomas P. Gilbert - Trends in Ecology & Evolution 2016 cited by 383
- Population genomics of the Viking world
Authors: Ashot Margaryan, Daniel J. Lawson, Martin Sikora, Fernando Racimo, Simon Rasmussen, Ida Moltke, Lara M. Cassidy, Emil Jørsboe, Andrés Ingason, Mikkel Winther Pedersen, Thorfinn Sand Korneliussen, Helene Wilhelmson, Magdalena M. Buś, Peter de Barros Damgaard, Rui Martiniano, Gabriel Renaud, Claude Bhérer, J. Víctor Moreno-Mayar, Anna K. Fotakis, Marie Allen, Raili Allmäe, Martyna Molak, Enrico Cappellini, Gabriele Scorrano, Hugh McColl, Alexandra Buzhilova, Allison Fox, Anders Albrechtsen, Berit Schütz, Birgitte Skår, Caroline Arcini, Ceri Falys, Charlotte Hedenstierna Jonson, Dariusz Błaszczyk, Denis V. Pezhemsky, Gordon Turner‐Walker, Hildur Gestsdóttir, Inge Lundstrøm, Ingrid Gustin, Ingrid Mainland, Inna Potekhina, Italo Maria Muntoni, Jade Yu Cheng, Jesper Stenderup, Jilong Ma, Julie Gibson, Jüri Peets, Jörgen Gustafsson, Katrine Iversen, Linzi Simpson, Lisa Strand, Louise Loe, Maeve Sikora, Marek Florek, Maria Vretemark, Mark Redknap, Monika Bajka, Tamara Pushkina, Morten Søvsø, Natalia Grigoreva, Tom Christensen, Ole Thirup Kastholm, Otto Uldum, Pasquale Favia, Per Holck, Sabine Sten, Símun V. Arge, Sturla Ellingvåg, Vayacheslav Moiseyev, Wiesław Bogdanowicz, Yvonne Magnusson, Ludovic Orlando, Peter Pentz, Mads Dengsø Jessen, Anne Pedersen, Mark Collard, Daniel G. Bradley, Marie Louise Schjellerup Jørkov, Jette Arneborg, Niels Lynnerup, Neil Price, M. Thomas P. Gilbert, Morten E. Allentoft, Jan Bill, Søren Michael Sindbæk, Lotte Hedeager, Kristian Kristiansen, Rasmus Nielsen, Thomas Werge, Eske Willerslev - Nature 2020 cited by 353
- Grey wolf genomic history reveals a dual ancestry of dogs
Authors: Anders Bergström, David W. G. Stanton, Ulrike H. Taron, Laurent Frantz, Mikkel‐Holger S. Sinding, Erik Ersmark, Saskia Pfrengle, Molly Cassatt‐Johnstone, Ophélie Lebrasseur, Linus Girdland-Flink, Daniel Fernandes, Morgane Ollivier, Leo Speidel, Shyam Gopalakrishnan, Michael V. Westbury, Jazmín Ramos‐Madrigal, Tatiana R. Feuerborn, Ella Reiter, Joscha Gretzinger, Susanne C. Münzel, Pooja Swali, Nicholas J. Conard, Christian Carøe, James Haile, Anna Linderholm, Semyon Androsov, Ian Barnes, Chris Baumann, Norbert Benecke, Hervé Bocherens, Selina Brace, Ruth F. Carden, Dorothée G. Drucker, Sergey Fedorov, Mihály Gasparik, Mietje Germonpré, Semyon Grigoriev, Pam Groves, Stefan Hertwig, Varvara V. Ivanova, Luc Janssens, Richard P. Jennings, Aleksei Kasparov, Irina V. Kirillova, Islam Kurmaniyazov, Yaroslav V. Kuzmin, П. А. Косинцев, Martina Lázničková‐Galetová, Charlotte Leduc, Pavel A. Nikolskiy, Marc Nussbaumer, Cóilín O’Drisceoil, Ludovic Orlando, Alan K. Outram, Elena Y. Pavlova, Angela Perri, Małgorzata Pilot, Vladimir V. Pitulko, В. В. Плотников, А. В. Протопопов, André Rehazek, Mikhail Sablin, Andaine Seguin-Orlando, Jan Storå, Christian Verjux, Victor F. Zaibert, Grant D. Zazula, Philippe Crombé, Anders J. Hansen, Eske Willerslev, Jennifer A. Leonard, Anders Götherström, Ron Pinhasi, Verena J. Schuenemann, Michael Hofreiter, M. Thomas P. Gilbert, Beth Shapiro, Greger Larson, Johannes Krause, Love Dalén, Pontus Skoglund - Nature 2022 cited by 189
- GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
Authors: Patrick Denis Browne, Tue Kjærgaard Nielsen, Witold Kot, Anni Aggerholm, M. Thomas P. Gilbert, Lara Puetz, Morten Rasmussen, Athanasios Zervas, Lars Hestbjerg Hansen - GigaScience 2020 cited by 203
- DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions
Authors: Lucie Zinger, Aurélie Bonin, Inger Greve Alsos, Miklós Bálint, Holly M. Bik, Frédéric Boyer, Anthony A. Chariton, Simon Creer, Éric Coissac, Bruce E. Deagle, Marta De Barba, Ian A. Dickie, Alex J. Dumbrell, Gentile Francesco Ficetola, Noah Fierer, Luca Fumagalli, M. Thomas P. Gilbert, Simon Jarman, Ari Jumpponen, Håvard Kauserud, Ludovic Orlando, Johan Pansu, Jan Pawłowski, Leho Tedersoo, Philip Francis Thomsen, Eske Willerslev, Pierre Taberlet - Molecular Ecology 2019 cited by 453
- Convergent evolution of the genomes of marine mammals
Authors: Andrew D. Foote, Yue Liu, Gregg W.C. Thomas, Tomáš Vinař, Jessica Alföldi, Jixin Deng, Shannon Dugan, Cornelis E. van Elk, Margaret E. Hunter, Vandita Joshi, Ziad Khan, Christie Kovar, Sandra L. Lee, Kerstin Lindblad‐Toh, Annalaura Mancia, Rasmus Nielsen, Xiang Qin, Jiaxin Qu, Brian J. Raney, Nagarjun Vijay, Jochen B. W. Wolf, Matthew W. Hahn, Donna M. Muzny, Kim C. Worley, M. Thomas P. Gilbert, Richard A. Gibbs - Nature Genetics 2015 cited by 498
- Single‐tube library preparation for degraded DNA
Authors: Christian Carøe, Shyam Gopalakrishnan, Lasse Vinner, Sarah S. T. Mak, Mikkel‐Holger S. Sinding, José Alfredo Samaniego Castruita, Nathan Wales, Thomas Sicheritz‐Pontén, M. Thomas P. Gilbert - Methods in Ecology and Evolution 2017 cited by 358
- Disentangling host–microbiota complexity through hologenomics
Authors: Antton Alberdi, Sandra B. Andersen, Morten T. Limborg, Robert R. Dunn, M. Thomas P. Gilbert - Nature Reviews Genetics 2021 cited by 115
- Quantifying Temporal Genomic Erosion in Endangered Species
Authors: David Díez‐del‐Molino, Fátima Sánchez Barreiro, Ian Barnes, M. Thomas P. Gilbert, Love Dalén - Trends in Ecology & Evolution 2017 cited by 262
- On the origin and evolution of RNA editing in metazoans
Authors: Pei Zhang, Yuanzhen Zhu, Qunfei Guo, Ji Li, Xiaoyu Zhan, Hao Yu, Nianxia Xie, Huishuang Tan, Nina Lundholm, Lydia Garcia‐Cuetos, Michael D. Martin, Meritxell Antó, Yi‐Hsien Su, Iñaki Ruiz‐Trillo, Mark Q. Martindale, Jr‐Kai Yu, M. Thomas P. Gilbert, Guojie Zhang, Qiye Li - Cell Reports 2023 cited by 80
- Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals
Authors: Andrew D. Foote, Philip Francis Thomsen, Signe Sveegaard, Magnus Wahlberg, Jos Kielgast, Line Anker Kyhn, Andreas Salling, Anders Galatius, Ludovic Orlando, M. Thomas P. Gilbert - PLoS ONE 2012 cited by 395
- Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals
Authors: Davide Bozzi, Jacob Agerbo Rasmussen, Christian Carøe, Harald Sveier, Kristian Nordøy, M. Thomas P. Gilbert, Morten T. Limborg - Animal Microbiome 2021 cited by 180
