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Simon Y. W. Ho

Active 2004–2025

128
Papers
32,770
Citations
82
h-index
122
i10-index

Citations

Citations per year for Simon Y. W. Ho1961: 1 citations1995: 2 citations2000: 1 citations2002: 1 citations2004: 3 citations2005: 27 citations2006: 63 citations2007: 101 citations2008: 142 citations2009: 199 citations2010: 209 citations2011: 250 citations2012: 229 citations2013: 258 citations2014: 346 citations2015: 329 citations2016: 359 citations2017: 287 citations2018: 265 citations2019: 972 citations2020: 887 citations2021: 764 citations2022: 516 citations2023: 340 citations2024: 577 citations2025: 230 citations2026: 5 citations1962–1994: no citations, so these years are not shown1996–1999: no citations, so these years are not shown2001: no citations, so this year is not shown2003: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,723 citing papers, 18% of this breakdownUnited Kingdom: 1,268 citing papers, 8.4% of this breakdownChina: 1,166 citing papers, 7.7% of this breakdownAustralia: 842 citing papers, 5.6% of this breakdownGermany: 839 citing papers, 5.5% of this breakdownFrance: 609 citing papers, 4% of this breakdownCanada: 453 citing papers, 3% of this breakdownSpain: 416 citing papers, 2.7% of this breakdownSweden: 374 citing papers, 2.5% of this breakdownDenmark: 366 citing papers, 2.4% of this breakdownBrazil: 347 citing papers, 2.3% of this breakdownSwitzerland: 309 citing papers, 2% of this breakdown
0%18%Other 35.9%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology45.3%
  • Agricultural and Biological Sciences17.2%
  • Environmental Science12%
  • Medicine10.3%
  • Earth and Planetary Sciences6.7%
  • Immunology and Microbiology3.4%
  • Other5.1%

Topics

  • Genetic diversity and population structure10%
  • Genomics and Phylogenetic Studies9.8%
  • Evolution and Paleontology Studies3.6%
  • Plant and animal studies2.8%
  • Plant Diversity and Evolution2.5%
  • Forensic and Genetic Research1.8%
  • Other69.5%

Coauthors

All papers

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  1. Relaxed Phylogenetics and Dating with Confidence

    Authors: Alexei J. Drummond, Simon Y. W. Ho, Matthew J. Phillips, Andrew Rambaut - PLoS Biology 2006 cited by 6,601

  2. PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

    Authors: Robert Lanfear, Brett Calcott, Simon Y. W. Ho, Stéphane Guindon - Molecular Biology and Evolution 2012 cited by 5,798

  3. Whole-genome analyses resolve early branches in the tree of life of modern birds

    Authors: Erich D. Jarvis, Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y. W. Ho, Brant C. Faircloth, Benoît Nabholz, Jason T. Howard, Alexander Suh, Claudia Weber, Rute R. da Fonseca, Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Liu, Ganesh Ganapathy, Bastien Boussau, Md. Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, Toni Gabaldón, Salvador Capella-Gutiérrez, Jaime Huerta‐Cepas, Bhanu Rekepalli, Kasper Munch, Mikkel Heide Schierup, Bent Erik Kramer Lindow, Wesley C. Warren, David A. Ray, Richard E. Green, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Shengbin Li, Ning Li, Yinhua Huang, Elizabeth P. Derryberry, Mads F. Bertelsen, Frederick H. Sheldon, Robb T. Brumfield, Claudio V. Mello, Peter V. Lovell, Morgan Wirthlin, Maria Paula Cruz Schneider, Francisco Prosdocimi, José Alfredo Samaniego Castruita, Amhed Missael Vargas Velazquez, Alonzo Alfaro‐Núñez, Paula F. Campos, Bent Petersen, Thomas Sicheritz‐Pontén, An Pas, Tom Bailey, R. Paul Scofield, Michael Bunce, David M. Lambert, Qi Zhou, Polina L. Perelman, Amy C. Driskell, Beth Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiuemei Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnéa Smeds, Frank E. Rheindt, Michael J. Braun, Jon Fjeldså, Ludovic Orlando, F. Keith Barker, Knud A. Jønsson, Warren E. Johnson, Klaus‐Peter Koepfli, Stephen J. O’Brien, David Haussler, Oliver A. Ryder, Carsten Rahbek, Eske Willerslev, Gary R. Graves, Travis C. Glenn, John E. McCormack, David W. Burt, Hans Ellegren, Per Alström, Scott V. Edwards, Alexandros Stamatakis, David P. Mindell, Joël Cracraft and 5 more - Science 2014 cited by 2,049

  4. Complexity of avian evolution revealed by family-level genomes

    Authors: Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A. Duchêne, Qi Fang, Yuan Deng, Alexey M. Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M. T. Nguyen, Simon Y. W. Ho, Brant C. Faircloth, Julia Haag, Peter Houde, Joël Cracraft, Metin Balaban, Uyen Mai, Guangji Chen, Rongsheng Gao, Chengran Zhou, YuLong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A. Ogilvie, Luay Nakhleh, Bent Erik Kramer Lindow, Benoît Morel, Jon Fjeldså, Peter A. Hosner, Rute R. da Fonseca, Bent Petersen, Joseph A. Tobias, Tamás Székely, Jonathan D. Kennedy, Andrew Hart Reeve, András Liker, Martin Stervander, Agostinho Antunes, Dieter Thomas Tietze, Mads F. Bertelsen, Fumin Lei, Carsten Rahbek, Gary R. Graves, Mikkel Heide Schierup, Tandy Warnow, Edward L. Braun, M. Thomas P. Gilbert, Erich D. Jarvis, Siavash Mirarab, Guojie Zhang - Nature 2024 cited by 279

  5. EasyCodeML: A visual tool for analysis of selection using CodeML

    Authors: Fangluan Gao, Chengjie Chen, Daej A. Arab, Zhenguo Du, Yehua He, Simon Y. W. Ho - Ecology and Evolution 2019 cited by 587

  6. The water lily genome and the early evolution of flowering plants

    Authors: Liangsheng Zhang, Fei Chen, Xingtan Zhang, Zhen Li, Yiyong Zhao, Rolf Lohaus, Xiaojun Chang, Wei Dong, Simon Y. W. Ho, Xing Liu, Aixia Song, Junhao Chen, Wenlei Guo, Zhengjia Wang, Yingyu Zhuang, Haifeng Wang, Xuequn Chen, Juan Hu, Yanhui Liu, Yuan Qin, Kai Wang, Shanshan Dong, Yang Liu, Shouzhou Zhang, Xianxian Yu, Qian Wu, Liangsheng Wang, Xueqing Yan, Yuannian Jiao, Hongzhi Kong, Xiaofan Zhou, Cuiwei Yu, Yuchu Chen, Fan Li, Jihua Wang, Wei Chen, Xinlu Chen, Qidong Jia, Chi Zhang, Yifan Jiang, Wanbo Zhang, Guanhua Liu, Jianyu Fu, Feng Chen, Hong Mā, Yves Van de Peer, Haibao Tang - Nature 2019 cited by 482

  7. Adaptation and conservation insights from the koala genome

    Authors: Rebecca N. Johnson, Denis O’Meally, Zhiliang Chen, Graham Etherington, Simon Y. W. Ho, Will Nash, Catherine E. Grueber, Yuanyuan Cheng, Camilla M. Whittington, Siobhan Dennison, Emma Peel, Wilfried Haerty, Rachel J. O’Neill, D. J. Colgan, Tonia Russell, David E. Alquezar‐Planas, Val Attenbrow, Jason G. Bragg, Parice Brandies, Amanda Yoon-Yee Chong, Janine E. Deakin, Federica Di Palma, Zachary Duda, Mark D. B. Eldridge, Kyle M. Ewart, Carolyn J. Hogg, Greta J. Frankham, Arthur Georges, Amber Gillett, Merran Govendir, Alex D. Greenwood, Takashi Hayakawa, Kristofer M. Helgen, Matthew Hobbs, Clare E. Holleley, Thomas Heider, Elizabeth A. Jones, Andrew King, Danielle Madden, Jennifer A. Marshall Graves, Katrina Morris, Linda E. Neaves, Hardip R. Patel, Adam Polkinghorne, Marilyn B. Renfree, Charles Robin, Ryan Salinas, Kyriakos Tsangaras, Paul D. Waters, Shafagh A. Waters, Belinda Wright, Marc R. Wilkins, Peter Timms, Katherine Belov - Nature Genetics 2018 cited by 287

  8. The Influence of Rate Heterogeneity among Sites on the Time Dependence of Molecular Rates

    Authors: Julien Soubrier, Mike Steel, Michael S. Y. Lee, Clio Der Sarkissian, Stéphane Guindon, Simon Y. W. Ho, Alan Cooper - Molecular Biology and Evolution 2012 cited by 342

  9. Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios

    Authors: Arong Luo, Cheng Ling, Simon Y. W. Ho, Chao‐Dong Zhu - Systematic Biology 2018 cited by 441

  10. Molecular‐clock methods for estimating evolutionary rates and timescales

    Authors: Simon Y. W. Ho, Sebastián Duchêne - Molecular Ecology 2014 cited by 381

  11. A practical introduction to sequentially Markovian coalescent methods for estimating demographic history from genomic data

    Authors: Niklas Mather, Samuel M. Traves, Simon Y. W. Ho - Ecology and Evolution 2019 cited by 160

  12. Rethinking dog domestication by integrating genetics, archeology, and biogeography

    Authors: Greger Larson, Elinor K. Karlsson, Angela Perri, Matthew T. Webster, Simon Y. W. Ho, Joris Peters, Peter W. Stahl, Philip J. Piper, Frode Lingaas, Merete Fredholm, Kenine E. Comstock, Jaime F. Modiano, C. Schelling, Alexander I. Agoulnik, Peter A. J. Leegwater, Keith Dobney, Jean‐Denis Vigne, Carles Vilà, Leif Andersson, Kerstin Lindblad‐Toh - National Academy of Sciences, Proceedings of the National Academy of Sciences 2012 cited by 532

  13. Bayesian molecular dating: opening up the black box

    Authors: Lindell Bromham, Sebastián Duchêne, Xia Hua, Andrew M. Ritchie, David A. Duchêne, Simon Y. W. Ho - Biological reviews/Biological reviews of the Cambridge Philosophical Society 2017 cited by 171

  14. Skyline‐plot methods for estimating demographic history from nucleotide sequences

    Authors: Simon Y. W. Ho, Beth Shapiro - Molecular Ecology Resources 2011 cited by 506

  15. Species-specific responses of Late Quaternary megafauna to climate and humans

    Authors: Eline D. Lorenzen, David Nogués‐Bravo, Ludovic Orlando, Jaco Weinstock, Jonas Binladen, Katharine A. Marske, Andrew Ugan, Michael K. Borregaard, M. Thomas P. Gilbert, Rasmus Nielsen, Simon Y. W. Ho, Ted Goebel, Kelly E. Graf, David Byers, Jesper Stenderup, Morten Rasmussen, Paula F. Campos, Jennifer A. Leonard, Klaus‐Peter Koepfli, Duane Froese, Grant D. Zazula, Thomas W. Stafford, Kim Aaris‐Sørensen, Persaram Batra, Alan M. Haywood, Joy Singarayer, Paul J. Valdes, Г. Г. Боескоров, James A. Burns, S. P. Davydov, James Haile, Dennis L. Jenkins, П. А. Косинцев, Т. В. Кузнецова, Xulong Lai, Larry D. Martin, H. Gregory McDonald, Dick Mol, Morten Meldgaard, Kasper Munch, Elisabeth Stephan, Mikhail Sablin, Robert S. Sommer, Taras Sipko, Eric Scott, Marc A. Suchard, Alexei Tikhonov, Rane Willerslev, Robert K. Wayne, Alan Cooper, Michael Hofreiter, Andrei Sher, Beth Shapiro, Carsten Rahbek, Eske Willerslev - Nature 2011 cited by 698

  16. Multiple migrations to the Philippines during the last 50,000 years

    Authors: Maximilian Larena, Federico Sánchez‐Quinto, Per Sjödin, James McKenna, Carlo Ebeo, Rebecca Reyes, Ophelia Casel, Jinyuan Huang, Kim Pullupul Hagada, Dennis Guilay, Jennelyn Reyes, Fatima Pir Allian, Virgilio Mori, Lahaina Sue Azarcon, Alma B. Manera, Celito Terando, Lucio Jamero, Gauden Sireg, Renefe Manginsay-Tremedal, Maria Shiela Labos, Richard Dian Vilar, Acram Latiph, Rodelio Linsahay Saway, Erwin Marte, Pablito Magbanua, Amor Morales, Ismael Java, Rudy Reveche, Becky Barrios, Erlinda M. Burton, Jesus Christopher Salon, Ma. Junaliah Tuazon Kels, A. Albano, Rose Beatrix Cruz-Angeles, Edison Molanida, Lena Granehäll, Mário Vicente, Hanna Edlund, Jun-Hun Loo, J. Tréjaut, Simon Y. W. Ho, Lawrence A. Reid, Helena Malmström, Carina M. Schlebusch, Kurt Lambeck, Phillip Endicott, Mattias Jakobsson - National Academy of Sciences, Proceedings of the National Academy of Sciences 2021 cited by 189

  17. The extremophile Nicotiana benthamiana has traded viral defence for early vigour

    Authors: Julia Bally, Kenlee Nakasugi, Fangzhi Jia, Hyungtaek Jung, Simon Y. W. Ho, Mei Wong, Chloe M. Paul, Fatima Naim, Craig C. Wood, Ross Crowhurst, Roger P. Hellens, J. L. Dale, Peter M. Waterhouse - Nature Plants 2015 cited by 159

  18. The Recovery, Interpretation and Use of Ancient Pathogen Genomes

    Authors: Sebastián Duchêne, Simon Y. W. Ho, Ann G. Carmichael, Edward C. Holmes, Hendrik N. Poinar - Current Biology 2020 cited by 73

  19. Excluding Loci With Substitution Saturation Improves Inferences From Phylogenomic Data

    Authors: David A. Duchêne, Niklas Mather, Cara Van Der Wal, Simon Y. W. Ho - Systematic Biology 2021 cited by 60

  20. Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times

    Authors: Simon Y. W. Ho, Matthew J. Phillips, Alan Cooper, Alexei J. Drummond - Molecular Biology and Evolution 2005 cited by 1,079

  21. Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates

    Authors: Sebastián Duchêne, Edward C. Holmes, Simon Y. W. Ho - Royal Society B Biological Sciences, Proceedings of the Royal Society B Biological Sciences 2014 cited by 215

  22. Taller plants have lower rates of molecular evolution

    Authors: Robert Lanfear, Simon Y. W. Ho, T. Jonathan Davies, Angela T. Moles, Lonnie W. Aarssen, Nathan G. Swenson, Laura Warman, Amy E. Zanne, Andrew P. Allen - Nature Communications 2013 cited by 214

  23. The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data

    Authors: Sebastián Duchêne, David A. Duchêne, Edward C. Holmes, Simon Y. W. Ho - Molecular Biology and Evolution 2015 cited by 197

  24. Mitochondrial Phylogenomics Resolves the Global Spread of Higher Termites, Ecosystem Engineers of the Tropics

    Authors: Thomas Bourguignon, Nathan Lo, Jan Šobotník, Simon Y. W. Ho, Naeem Iqbal, Éric Coissac, Maria Lee, Martin M. Jendryka, David Sillam‐Dussès, Barbora Křížková, Yves Roisin, Theodore A. Evans - Molecular Biology and Evolution 2016 cited by 143