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Jason D. Buenrostro

Active 2010–2026

87
Papers
31,306
Citations
54
h-index
84
i10-index

Citations

Citations per year for Jason D. Buenrostro1987: 1 citations1989: 1 citations1992: 2 citations2003: 5 citations2009: 1 citations2010: 2 citations2011: 2 citations2012: 7 citations2013: 13 citations2014: 43 citations2015: 120 citations2016: 213 citations2017: 350 citations2018: 512 citations2019: 1,273 citations2020: 1,612 citations2021: 1,978 citations2022: 1,823 citations2023: 1,557 citations2024: 2,221 citations2025: 1,268 citations2026: 79 citations1988: no citations, so this year is not shown1990–1991: no citations, so these years are not shown1993–2002: no citations, so these years are not shown2004–2008: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 5,632 citing papers, 32.3% of this breakdownChina: 2,073 citing papers, 11.9% of this breakdownGermany: 1,281 citing papers, 7.3% of this breakdownUnited Kingdom: 1,261 citing papers, 7.2% of this breakdownFrance: 542 citing papers, 3.1% of this breakdownCanada: 539 citing papers, 3.1% of this breakdownJapan: 450 citing papers, 2.6% of this breakdownNetherlands: 439 citing papers, 2.5% of this breakdownAustralia: 438 citing papers, 2.5% of this breakdownSwitzerland: 418 citing papers, 2.4% of this breakdownSpain: 416 citing papers, 2.4% of this breakdownSweden: 386 citing papers, 2.2% of this breakdown
0%32.3%Other 20.5%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology64.2%
  • Medicine17.5%
  • Immunology and Microbiology11.6%
  • Neuroscience2.5%
  • Agricultural and Biological Sciences2.3%
  • Environmental Science0.4%
  • Other1.5%

Topics

  • Single-cell and spatial transcriptomics9%
  • Genomics and Chromatin Dynamics7.1%
  • Epigenetics and DNA Methylation4.7%
  • Immune Cell Function and Interaction3.1%
  • RNA Research and Splicing2.9%
  • Cancer Genomics and Diagnostics2.7%
  • Other70.5%

Coauthors

All papers

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  1. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

    Authors: Jason D. Buenrostro, Paul G. Giresi, Lisa C. Zaba, Howard Y. Chang, William J. Greenleaf - Nature Methods 2013 cited by 7,027

  2. ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide

    Authors: Jason D. Buenrostro, Beijing Wu, Howard Y. Chang, William J. Greenleaf - Current Protocols in Molecular Biology 2015 cited by 3,637

  3. chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

    Authors: Alicia N. Schep, Beijing Wu, Jason D. Buenrostro, William J. Greenleaf - Nature Methods 2017 cited by 1,860

  4. Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

    Authors: Tommaso Biancalani, Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger, Neriman Tokcan, Charles Vanderburg, Åsa Segerstolpe, Meng Zhang, Inbal Avraham‐Davidi, Sanja Vicković, Mor Nitzan, Sai Ma, Ayshwarya Subramanian, Michał Lipiński, Jason D. Buenrostro, Nik Bear Brown, Duccio Fanelli, Xiaowei Zhuang, Evan Z. Macosko, Aviv Regev - Nature Methods 2021 cited by 897

  5. Single-cell chromatin accessibility reveals principles of regulatory variation

    Authors: Jason D. Buenrostro, Beijing Wu, Ulrike Litzenburger, Dave Ruff, Michael L. Gonzales, M Snyder, Howard Y. Chang, William J. Greenleaf - Nature 2015 cited by 2,554

  6. Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

    Authors: Sai Ma, Bing Zhang, Lindsay M. LaFave, Andrew Earl, Zachary Chiang, Yan Hu, Jiarui Ding, Alison Brack, Vinay K. Kartha, Tristan Tay, Travis Law, Caleb A. Lareau, Ya‐Chieh Hsu, Aviv Regev, Jason D. Buenrostro - Cell 2020 cited by 1,249

  7. Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

    Authors: M. Ryan Corces, Jason D. Buenrostro, Beijing Wu, Peyton Greenside, Steven M. Chan, Julie L. Koenig, M Snyder, Jonathan K. Pritchard, Anshul Kundaje, William J. Greenleaf, Ravindra Majeti, Howard Y. Chang - Nature Genetics 2016 cited by 1,292

  8. Epigenetic memory of coronavirus infection in innate immune cells and their progenitors

    Authors: Jin‐Gyu Cheong, Arjun Ravishankar, Siddhartha Sharma, Christopher N. Parkhurst, Simon Grassmann, Claire Wingert, Paôline Laurent, Sai Ma, Lucinda Paddock, Isabella C. Miranda, Emin Onur Karakaslar, Djamel Nehar-Belaid, Asa Thibodeau, Michael J. Bale, Vinay K. Kartha, Jim Yee, Minh Yen Mays, Chenyang Jiang, Andrew W. Daman, Alexia Martínez de Paz, Dughan Ahimovic, Víctor Ramos, Alexander Lercher, Erik Nielsen, Sergio Alvarez-Mulett, Ling Zheng, Andrew Earl, Alisha R. Yallowitz, Lexi Robbins, Elyse LaFond, Karissa Weidman, Sabrina Racine‐Brzostek, He S. Yang, David R. Price, Louise Leyre, André F. Rendeiro, Hiranmayi Ravichandran, Junbum Kim, Alain Borczuk, Charles M. Rice, Rebecca Jones, Edward J. Schenck, Robert J. Kaner, Amy Chadburn, Zhen Zhao, Virginia Pascual, Olivier Elemento, Robert E. Schwartz, Jason D. Buenrostro, Rachel Niec, Franck J. Barrat, Lindsay Lief, Joseph C. Sun, Duygu Ucar, Steven Z. Josefowicz - Cell 2023 cited by 289

  9. The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments

    Authors: Ricardo Grieshaber‐Bouyer, Felix A. Radtke, Pierre Cunin, Giuseppina Stifano, Anaïs Levescot, Brinda Vijaykumar, Nathan Nelson-Maney, Rachel B. Blaustein, Paul A. Monach, Peter A. Nigrović, Oscar A. Aguilar, Rhys S. Allan, Jilian Astarita, K. Frank Austen, Nora A. Barrett, Alev Baysoy, Christophe Benoıst, Brian D. Brown, Matthew B. Buechler, Jason D. Buenrostro, Maria Acebes Casanova, Kaitavjeet Chowdhary, Marco Colonna, Ty Crowl, Tianda Deng, Fiona Desland, Maxime Dhainaut, Jiarui Ding, Claudia X. Dominguez, Daniel F. Dwyer, Michela Frascoli, Shani T. Gal-Oz, Ananda W. Goldrath, Tim Johanson, Stefan Jordan, Joonsoo Kang, Varun Kapoor, Ephraim Kenigsberg, Joel Kim, Ki wook Kim, Evgeny Kiner, Mitchell Kronenberg, Lewis L. Lanier, Catherine Laplace, Caleb A. Lareau, Andrew M. Leader, Jisu Lee, Assaf Magen, Bárbara Maier, Alexandra Maslova, Diane Mathis, Adelle P. McFarland, M.S. Merad, Étienne Meunier, Paul A. Monach, Sara Mostafavi, Sören Müller, Christoph Muus, Hadas Ner‐Gaon, Quyhn Nguyen, Gherman Novakovsky, Stephen L. Nutt, Kayla Omilusik, Adriana Ortiz-Lopez, Mallory Paynich, Vincent Peng, Marc Potempa, Rachana Pradhan, Sara Quon, Ricardo N. Ramírez, Deepshika Ramanan, Gwendalyn J. Randolph, Aviv Regev, Samuel A. Rose, Kumba Seddu, Tal Shay, Avishai Shemesh, Justin A. Shyer, Christopher Smilie, Nick Spidale, Ayshwarya Subramanian, Katelyn Sylvia, Julie Tellier, Shannon J. Turley, Brinda Vijaykumar, Amy J. Wagers, Chendi Wang, Peter L. Wang, Aleksandra Wroblewska, Liang Yang, Aldrin Kay‐Yuen Yim, Hideyuki Yoshida - Nature Communications 2021 cited by 336

  10. Spatial genomics enables multi-modal study of clonal heterogeneity in tissues

    Authors: Tongtong Zhao, Zachary Chiang, Julia W. Morriss, Lindsay M. LaFave, Evan Murray, Isabella Del Priore, Kevin Meli, Caleb A. Lareau, Naeem Nadaf, Jilong Li, Andrew Earl, Evan Z. Macosko, Tyler Jacks, Jason D. Buenrostro, Fei Chen - Nature 2021 cited by 270

  11. Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics

    Authors: Leif S. Ludwig, Caleb A. Lareau, Jacob C. Ulirsch, Elena Christian, Christoph Muus, Lauren H. Li, Karin Pelka, William Ge, Yaara Oren, Alison Brack, Travis Law, Christopher Rodman, Jonathan Chen, Genevieve M. Boland, Nir Hacohen, Orit Rozenblatt–Rosen, Martin J. Aryee, Jason D. Buenrostro, Aviv Regev, Vijay G. Sankaran - Cell 2019 cited by 570

  12. Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex

    Authors: Ana Uzquiano, Amanda J. Kedaigle, Martina Pigoni, Bruna Paulsen, Xian Adiconis, Kwanho Kim, Tyler Faits, Surya Nagaraja, Noelia Antón-Bolaños, Chiara Gerhardinger, Ashley Tucewicz, Evan Murray, Xin Jin, Jason D. Buenrostro, Fei Chen, Silvia Velasco, Aviv Regev, Joshua Z. Levin, Paola Arlotta - Cell 2022 cited by 244

  13. Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

    Authors: Caleb A. Lareau, Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang, Karin Pelka, Jeffrey M. Verboon, Wendy Luo, Elena Christian, Daniel Rosebrock, Gad Getz, Genevieve M. Boland, Fei Chen, Jason D. Buenrostro, Nir Hacohen, Catherine J. Wu, Martin J. Aryee, Aviv Regev, Vijay G. Sankaran - Nature Biotechnology 2020 cited by 314

  14. A transcription factor atlas of directed differentiation

    Authors: Julia Joung, Sai Ma, Tristan Tay, Kathryn R. Geiger-Schuller, Paul C. Kirchgatterer, Vanessa K. Verdine, Baolin Guo, Mario A. Arias-García, William E. Allen, Ankita Singh, Olena Kuksenko, Omar O. Abudayyeh, Jonathan S. Gootenberg, Zhanyan Fu, Rhiannon K. Macrae, Jason D. Buenrostro, Aviv Regev, Feng Zhang - Cell 2023 cited by 238

  15. Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility

    Authors: Caleb A. Lareau, Fabiana M. Duarte, Jennifer Chew, Vinay K. Kartha, Zach D. Burkett, Andrew Kohlway, Dmitry Pokholok, Martin J. Aryee, Frank J. Steemers, Ronald Lebofsky, Jason D. Buenrostro - Nature Biotechnology 2019 cited by 499

  16. Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation

    Authors: Jason D. Buenrostro, M. Ryan Corces, Caleb A. Lareau, Beijing Wu, Alicia N. Schep, Martin J. Aryee, Ravindra Majeti, Howard Y. Chang, William J. Greenleaf - Cell 2018 cited by 778

  17. The cis-Regulatory Atlas of the Mouse Immune System

    Authors: Hideyuki Yoshida, Caleb A. Lareau, Ricardo N. Ramírez, Samuel A. Rose, Bárbara Maier, Aleksandra Wroblewska, Fiona Desland, Aleksey Chudnovskiy, Arthur Mortha, Claudia X. Dominguez, Julie Tellier, Edy Y. Kim, Dan Dwyer, Susan A. Shinton, Tsukasa Nabekura, Yilin Qi, Bingfei Yu, Michelle L. Robinette, Ki-Wook Kim, Amy J. Wagers, Andrew Rhoads, Stephen L. Nutt, Brian D. Brown, Sara Mostafavi, Jason D. Buenrostro, Christophe Benoıst - Cell 2019 cited by 446

  18. Induction and transcriptional regulation of the co-inhibitory gene module in T cells

    Authors: Norio Chihara, Asaf Madi, Takaaki Kondo, Huiyuan Zhang, Nandini Acharya, Meromit Singer, Jackson Nyman, Nemanja D. Marjanovic, Monika S. Kowalczyk, Chao Wang, Sema Kurtuluş, Travis Law, Yasaman Etminan, James Nevin, Christopher D. Buckley, Patrick R. Burkett, Jason D. Buenrostro, Orit Rozenblatt–Rosen, Ana C. Anderson, Aviv Regev, Vijay K. Kuchroo - Nature 2018 cited by 457

  19. Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

    Authors: Huidong Chen, Luca Albergante, Jonathan Y. Hsu, Caleb A. Lareau, Giosuè Lo Bosco, Jihong Guan, Shuigeng Zhou, Alexander N. Gorban, Daniel E. Bauer, Martin J. Aryee, David M. Langenau, Andreï Zinovyev, Jason D. Buenrostro, Guo‐Cheng Yuan, Luca Pinello - Nature Communications 2019 cited by 329

  20. Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells

    Authors: Bing Zhang, Sai Ma, Inbal Rachmin, Megan He, Pankaj Baral, Sekyu Choi, William Antônio Gonçalves, Yulia Shwartz, Eva M. Fast, Yiqun Su, Leonard I. Zon, Aviv Regev, Jason D. Buenrostro, Thiago M. Cunha, Isaac M. Chiu, David E. Fisher, Ya‐Chieh Hsu - Nature 2020 cited by 291

  21. Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

    Authors: Lindsay M. LaFave, Vinay K. Kartha, Sai Ma, Kevin Meli, Isabella Del Priore, Caleb A. Lareau, Santiago Naranjo, Peter M.K. Westcott, Fabiana M. Duarte, Venkat Sankar, Zachary Chiang, Alison Brack, Travis Law, Haley Hauck, Annalisa Okimoto, Aviv Regev, Jason D. Buenrostro, Tyler Jacks - Cancer Cell 2020 cited by 235

  22. Corticosterone inhibits GAS6 to govern hair follicle stem-cell quiescence

    Authors: Sekyu Choi, Bing Zhang, Sai Ma, Meryem Gonzalez-Celeiro, Daniel Stein, Xin Jin, Seung Tea Kim, Yuan-Lin Kang, Antoine Besnard, Amélie Rezza, Laura Grisanti, Jason D. Buenrostro, Michael Rendl, Matthias Nahrendorf, Amar Sahay, Ya‐Chieh Hsu - Nature 2021 cited by 176

  23. Interrogation of human hematopoiesis at single-cell and single-variant resolution

    Authors: Jacob C. Ulirsch, Caleb A. Lareau, Erik L. Bao, Leif S. Ludwig, Michael H. Guo, Christian Benner, Ansuman T. Satpathy, Vinay K. Kartha, Rany M. Salem, Joel N. Hirschhorn, Hilary K. Finucane, Martin J. Aryee, Jason D. Buenrostro, Vijay G. Sankaran - Nature Genetics 2019 cited by 226

  24. Heritable transcriptional defects from aberrations of nuclear architecture

    Authors: Stamatis Papathanasiou, Nikos A. Mynhier, Shiwei Liu, Gregory J. Brunette, Ema Stokasimov, Etai Jacob, Lanting Li, Caroline Comenho, Bas van Steensel, Jason D. Buenrostro, Cheng‐Zhong Zhang, David Pellman - Nature 2023 cited by 86