M. Ryan Corces
Active 2010–2025
- 55
- Papers
- 18,828
- Citations
- 39
- h-index
- 52
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology63.7%
- Medicine24.1%
- Immunology and Microbiology6.6%
- Neuroscience2.7%
- Agricultural and Biological Sciences1.4%
- Engineering0.4%
- Other1.1%
Topics
- Single-cell and spatial transcriptomics6.4%
- Genomics and Chromatin Dynamics6.3%
- Epigenetics and DNA Methylation5.6%
- Cancer-related molecular mechanisms research4.9%
- RNA modifications and cancer4.3%
- Acute Myeloid Leukemia Research4.3%
- Other68.2%
Coauthors
- Howard Y. Chang28
- Jeffrey M. Granja18
- William J. Greenleaf17
- Ravindra Majeti16
- Ansuman T. Satpathy8
- Kathryn E. Yost7
- Maxwell R. Mumbach7
- Thomas J. Montine7
- Rui Li6
- S. Tansu Bagdatli6
- Hani Choudhry5
- Sarah E. Pierce5
- Shadi Shams5
- Adam J. Rubin4
- Andreas Reinisch4
- Anshul Kundaje4
- Beijing Wu4
- Bryan H. Louie4
- Danièl Thomas4
- Jason D. Buenrostro4
- Katerina Kraft4
- Kathleen S. Montine4
- Paul A. Khavari4
- Ryan A. Flynn4
All papers
- An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
Authors: M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton Greenside, Nicholas A. Sinnott‐Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa S. Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang - Nature Methods 2017 cited by 2,756
- ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
Authors: Jeffrey M. Granja, M. Ryan Corces, Sarah E. Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Y. Chang, William J. Greenleaf - Nature Genetics 2021 cited by 1,462
- The chromatin accessibility landscape of primary human cancers
Authors: M. Ryan Corces, Jeffrey M. Granja, Shadi Shams, Bryan H. Louie, José A. Seoane, Wanding Zhou, Tiago C. Silva, Clarice S. Groeneveld, Christopher K. Wong, Seung Woo Cho, Ansuman T. Satpathy, Maxwell R. Mumbach, Katherine A. Hoadley, A. Gordon Robertson, Nathan C. Sheffield, Ina Felau, Mauro A. A. Castro, Benjamin P. Berman, Louis M. Staudt, Jean C. Zenklusen, Peter W. Laird, Christina Curtis, The Cancer Genome Atlas Analysis Network, William J. Greenleaf, Howard Y. Chang, Rehan Akbani, Christopher C. Benz, Evan A. Boyle, Bradley M. Broom, Andrew D. Cherniack, Brian Craft, John A. Demchok, Ashley S. Doane, Olivier Elemento, Martin L. Ferguson, Mary J. Goldman, D. Neil Hayes, Jing He, Toshinori Hinoue, Marcin Imieliński, Steven J.M. Jones, Anab Kemal, Theo Knijnenburg, Anil Korkut, De‐Chen Lin, Yuexin Liu, Michael K. A. Mensah, Gordon B. Mills, Vincent Reuter, André Schultz, Hui Shen, Jason P. Smith, Roy Tarnuzzer, Sheyla Trefflich, Zhining Wang, John N. Weinstein, Lindsay Westlake, Jin Xu, Liming Yang, Christina Yau, Yang Zhao, Jingchun Zhu - Science 2018 cited by 1,356
- Chromatin accessibility profiling by ATAC-seq
Authors: Fiorella C. Grandi, Hailey Modi, Lucas Kampman, M. Ryan Corces - Nature Protocols 2022 cited by 556
- Circular ecDNA promotes accessible chromatin and high oncogene expression
Authors: Sihan Wu, Kristen M. Turner, Nam Nguyen, Ramya Raviram, Marcella L. Erb, Jennifer Santini, Jens Luebeck, Utkrisht Rajkumar, Yarui Diao, Bin Li, Wenjing Zhang, Nathan M. Jameson, M. Ryan Corces, Jeffrey M. Granja, Xingqi Chen, Ceyda Çoruh, Armen Abnousi, Jack Houston, Zhen Ye, Rong Hu, Miao Yu, Hoon Kim, Julie A. Law, Roel G.W. Verhaak, Ming Hu, Frank B. Furnari, Howard Y. Chang, Bing Ren, Vineet Bafna, Paul S. Mischel - Nature 2019 cited by 721
- Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
Authors: M. Ryan Corces, Jason D. Buenrostro, Beijing Wu, Peyton Greenside, Steven M. Chan, Julie L. Koenig, M Snyder, Jonathan K. Pritchard, Anshul Kundaje, William J. Greenleaf, Ravindra Majeti, Howard Y. Chang - Nature Genetics 2016 cited by 1,292
- Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia
Authors: Jeffrey M. Granja, Sandy Klemm, Lisa McGinnis, Arwa S. Kathiria, Anja Mezger, M. Ryan Corces, Benjamin Parks, Eric J. Gars, Michaela Liedtke, Grace Zheng, Howard Y. Chang, Ravindra Majeti, William J. Greenleaf - Nature Biotechnology 2019 cited by 566
- Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases
Authors: M. Ryan Corces, Anna Shcherbina, Soumya Kundu, Michael J. Gloudemans, Laure Frésard, Jeffrey M. Granja, Bryan H. Louie, Tiffany Eulalio, Shadi Shams, S. Tansu Bagdatli, Maxwell R. Mumbach, Boxiang Liu, Kathleen S. Montine, William J. Greenleaf, Anshul Kundaje, Stephen B. Montgomery, Howard Y. Chang, Thomas J. Montine - Nature Genetics 2020 cited by 384
- ecDNA hubs drive cooperative intermolecular oncogene expression
Authors: King L. Hung, Kathryn E. Yost, Liangqi Xie, Quanming Shi, Konstantin Helmsauer, Jens Luebeck, Robert Schöpflin, Joshua T. Lange, Rocío Chamorro González, Natasha E. Weiser, Celine Chen, Maria E. Valieva, Ivy Tsz-Lo Wong, Sihan Wu, Siavash R. Dehkordi, Connor V. Duffy, Katerina Kraft, Jun Tang, Julia A. Belk, John C. Rose, M. Ryan Corces, Jeffrey M. Granja, Rui Li, Utkrisht Rajkumar, Jordan Friedlein, Anindya Bagchi, Ansuman T. Satpathy, Robert Tjian, Stefan Mundlos, Vineet Bafna, Anton G. Henssen, Paul S. Mischel, Zhe Liu, Howard Y. Chang - Nature 2021 cited by 337
- A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
Authors: Ke Wang, Yul W. Yang, Бо Лю, Amartya Sanyal, M. Ryan Corces, Yong Chen, Bryan R. Lajoie, Angeline Protacio, Ryan A. Flynn, Rajnish A. Gupta, Joanna Wysocka, Ming Lei, Job Dekker, Jill A. Helms, Howard Y. Chang - Nature 2011 cited by 2,037
- Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
Authors: Jason D. Buenrostro, M. Ryan Corces, Caleb A. Lareau, Beijing Wu, Alicia N. Schep, Martin J. Aryee, Ravindra Majeti, Howard Y. Chang, William J. Greenleaf - Cell 2018 cited by 778
- Isocitrate dehydrogenase 1 and 2 mutations induce BCL-2 dependence in acute myeloid leukemia
Authors: Steven M. Chan, Danièl Thomas, M. Ryan Corces, Seethu Xavy, Suchita Rastogi, Wan‐Jen Hong, Feifei Zhao, Bruno C. Medeiros, David A. Tyvoll, Ravindra Majeti - Nature Medicine 2015 cited by 570
- Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
Authors: Maxwell R. Mumbach, Ansuman T. Satpathy, Evan A. Boyle, Chao Dai, Benjamin G. Gowen, Seung Woo Cho, Michelle Nguyen, Adam J. Rubin, Jeffrey M. Granja, Katelynn R. Kazane, Yuning Wei, Trieu Nguyen, Peyton Greenside, M. Ryan Corces, Josh Tycko, Dimitre R. Simeonov, Nabeela Suliman, Rui Li, Jin Xu, Ryan A. Flynn, Anshul Kundaje, Paul A. Khavari, Alexander Marson, Jacob E. Corn, Thomas Quertermous, William J. Greenleaf, Howard Y. Chang - Nature Genetics 2017 cited by 556
- Complement factor C1q mediates sleep spindle loss and epileptic spikes after mild brain injury
Authors: Stephanie S. Holden, Fiorella C. Grandi, Oumaima Aboubakr, Bryan Higashikubo, Frances S. Cho, Andrew H. Chang, Alejandro Osorio-Forero, Allison R. Morningstar, Vidhu Mathur, Logan J. Kuhn, Poojan Suri, Sethu Sankaranarayanan, Yaisa Andrews‐Zwilling, Andrea J. Tenner, Anita Lüthi, Eleonora Aronica, M. Ryan Corces, Ted Yednock, Jeanne T. Paz - Science 2021 cited by 130
- Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation
Authors: Katerina Kraft, Kathryn E. Yost, Sedona E. Murphy, Andreas Magg, Yicheng Long, M. Ryan Corces, Jeffrey M. Granja, Lars Wittler, Stefan Mundlos, Thomas R. Cech, Alistair N. Boettiger, Howard Y. Chang - National Academy of Sciences, Proceedings of the National Academy of Sciences 2022 cited by 109
- Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility
Authors: Mandy Meijer, Eneritz Agirre, Mukund Kabbe, Cassandra A. van Tuijn, Abeer Heskol, Chao Zheng, Ana Mendanha Falcão, Marek Bartošovič, Leslie A. Kirby, Daniela Calini, Michael R. Johnson, M. Ryan Corces, Thomas J. Montine, Xingqi Chen, Howard Y. Chang, Dheeraj Malhotra, Gonçalo Castelo‐Branco - Neuron 2022 cited by 100
- Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
Authors: Ansuman T. Satpathy, Jeffrey M. Granja, Kathryn E. Yost, Yanyan Qi, Francesca Meschi, Geoffrey P. McDermott, Brett N. Olsen, Maxwell R. Mumbach, Sarah E. Pierce, M. Ryan Corces, Preyas Shah, Jason C. Bell, Darisha Jhutty, Corey M. Nemec, Jean Wang, Li Wang, Yifeng Yin, Paul G. Giresi, Anne Lynn S. Chang, Grace Zheng, William J. Greenleaf, Howard Y. Chang - Nature Biotechnology 2019 cited by 1,060
- Clonal Evolution of Preleukemic Hematopoietic Stem Cells Precedes Human Acute Myeloid Leukemia
Authors: Max Jan, Thomas M. Snyder, M. Ryan Corces, Paresh Vyas, Irving L. Weissman, Stephen R. Quake, Ravindra Majeti - Science Translational Medicine 2012 cited by 719
- Preleukemic mutations in human acute myeloid leukemia affect epigenetic regulators and persist in remission
Authors: M. Ryan Corces, Wan‐Jen Hong, Irving L. Weissman, Bruno C. Medeiros, Ravindra Majeti - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 cited by 695
- Single-cell lineage tracing by endogenous mutations enriched in transposase accessible mitochondrial DNA
Authors: Jin Xu, Kevin A. Nuno, Ulrike Litzenburger, Yanyan Qi, M. Ryan Corces, Ravindra Majeti, Howard Y. Chang - eLife 2019 cited by 148
- LKB1 inactivation modulates chromatin accessibility to drive metastatic progression
Authors: Sarah E. Pierce, Jeffrey M. Granja, M. Ryan Corces, Jennifer J. Brady, Min K. Tsai, Aubrey B. Pierce, Rui Tang, Pauline Chu, David M. Feldser, Howard Y. Chang, Michael C. Bassik, William J. Greenleaf, Monte M. Winslow - Nature Cell Biology 2021 cited by 59
- Insulin Signaling and Dietary Restriction Differentially Influence the Decline of Learning and Memory with Age
Authors: Amanda Kauffman, Jasmine M. Ashraf, M. Ryan Corces, J. Landis, Coleen T. Murphy - PLoS Biology 2010 cited by 304
- Systematic benchmarking of single-cell ATAC-sequencing protocols
Authors: Florian De Rop, Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens, Carmen Bravo González‐Blas, Doménica Marchese, Ginevra Caratù, Suresh Poovathingal, Orit Rozenblatt–Rosen, Michael Slyper, Wendy Luo, Christoph Muus, Fabiana M. Duarte, Rojesh Shrestha, S. Tansu Bagdatli, M. Ryan Corces, Lira Mamanova, Andrew Knights, Kerstin B. Meyer, Ryan M. Mulqueen, Akram Taherinasab, Patrick Maschmeyer, Joern Pezoldt, Camille L G Lambert, Marta Iglesias, Sebastián R. Najle, Zain Y. Dossani, Luciano G. Martelotto, Zach D. Burkett, Ronald Lebofsky, José I. Martín‐Subero, Satish K. Pillai, Arnau Sebé-Pedrós, Bart Deplancke, Sarah A. Teichmann, Leif S. Ludwig, Theodore P. Braun, Andrew Adey, William J. Greenleaf, Jason D. Buenrostro, Aviv Regev, Stein Aerts, Holger Heyn - Nature Biotechnology 2023 cited by 51
- The Cell Type–Specific 5hmC Landscape and Dynamics of Healthy Human Hematopoiesis and TET2 -Mutant Preleukemia
Authors: Yusuke Nakauchi, Armon Azizi, Daniel Thomas, M. Ryan Corces, Andreas Reinisch, Rajiv Sharma, David Cruz Hernandez, Thomas Köhnke, Daiki Karigane, Amy Fan, Daniel Martinez-Krams, Melissa Stafford, Satinder Kaur, Ritika Dutta, Paul Phan, Asiri Ediriwickrema, Erin McCarthy, Yuhong Ning, Tierney Phillips, Christopher K. Ellison, Gulfem D. Guler, Anna Bergamaschi, Chin-Jen Ku, Samuel Levy, Ravindra Majeti - Blood Cancer Discovery 2022 cited by 47
