Benjamin P. Berman

Active 1994–2024

73
Papers
23,858
Citations
51
h-index
68
i10-index

Citations

Citations per year for Benjamin P. Berman1966: 3 citations1969: 1 citations1991: 1 citations1994: 2 citations1995: 1 citations1996: 4 citations1997: 1 citations1998: 3 citations1999: 4 citations2000: 122 citations2001: 241 citations2002: 269 citations2003: 211 citations2004: 210 citations2005: 186 citations2006: 133 citations2007: 129 citations2008: 110 citations2009: 111 citations2010: 143 citations2011: 206 citations2012: 263 citations2013: 267 citations2014: 257 citations2015: 292 citations2016: 216 citations2017: 257 citations2018: 258 citations2019: 616 citations2020: 950 citations2021: 1,097 citations2022: 872 citations2023: 650 citations2024: 866 citations2025: 431 citations2026: 28 citations1967–1968: no citations, so these years are not shown1970–1990: no citations, so these years are not shown1992–1993: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 4,550 citing papers, 29.1% of this breakdownChina: 1,592 citing papers, 10.2% of this breakdownUnited Kingdom: 1,165 citing papers, 7.4% of this breakdownGermany: 983 citing papers, 6.3% of this breakdownCanada: 591 citing papers, 3.8% of this breakdownFrance: 539 citing papers, 3.4% of this breakdownItaly: 441 citing papers, 2.8% of this breakdownSpain: 433 citing papers, 2.8% of this breakdownJapan: 418 citing papers, 2.7% of this breakdownAustralia: 414 citing papers, 2.6% of this breakdownNetherlands: 344 citing papers, 2.2% of this breakdownSwitzerland: 343 citing papers, 2.2% of this breakdown
0%29.1%Other 24.5%

Fields

  • Biochemistry, Genetics and Molecular Biology60.7%
  • Medicine19%
  • Neuroscience4.6%
  • Computer Science4.3%
  • Immunology and Microbiology3.6%
  • Agricultural and Biological Sciences3.6%
  • Other4.2%

Topics

  • Epigenetics and DNA Methylation6.3%
  • Genomics and Chromatin Dynamics4.9%
  • Cancer Genomics and Diagnostics4.5%
  • RNA modifications and cancer3.2%
  • Genomics and Phylogenetic Studies2.6%
  • Glioma Diagnosis and Treatment2.3%
  • Other76.2%

Coauthors

All papers

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  1. Pan-cancer analysis of whole genomes

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema, J. Todd Auman, Miriam R. R. Aure, Philip Awadalla, Marta Aymerich, Gary D. Bader, Adrian Baez‐Ortega, Matthew H. Bailey, Peter J. Bailey, Miruna Balasundaram, Saianand Balu, Pratiti Bandopadhayay, Rosamonde E. Banks, Stefano Barbi, Andrew P. Barbour, Jonathan Barenboim, Jill S. Barnholtz‐Sloan, Hugh Barr, Elisabet Barrera, John G. Bartlett, Javier Bartolomé, Claudio Bassi, Oliver F. Bathe, Daniel Baumhoer, Prashant Bavi, Stephen B. Baylin, Wojciech Bażant, Duncan Beardsmore, Timothy A. Beck, Sam Behjati, Andreas Behren, Beifang Niu, Cindy Bell, Sergi Beltrán, Christopher C. Benz, Andrew Berchuck, Anke K. Bergmann, Erik N. Bergstrom, Benjamin P. Berman, Daniel M. Berney, Stephan H. Bernhart, Rameen Beroukhim, Mario Berríos, Samantha Bersani, Johanna Bertl, Miguel Betancourt, Vinayak Bhandari, Shriram G. Bhosle, Andrew V. Biankin, Matthias Bieg, Darell D. Bigner, Hans Binder, Ewan Birney, Michael J. Birrer, Nidhan K. Biswas, Bodil Bjerkehagen, Tom Bodenheimer, Lori Boice, Giada Bonizzato, Johann S. de Bono and 1,224 more - Nature 2020 cited by 3,335

  2. The chromatin accessibility landscape of primary human cancers

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Brian Craft, John A. Demchok, Ashley S. Doane, Olivier Elemento, Martin L. Ferguson, Mary J. Goldman, D. Neil Hayes, Jing He, Toshinori Hinoue, Marcin Imieliński, Steven J.M. Jones, Anab Kemal, Theo Knijnenburg, Anil Korkut, De‐Chen Lin, Yuexin Liu, Michael K. A. Mensah, Gordon B. Mills, Vincent Reuter, André Schultz, Hui Shen, Jason P. Smith, Roy Tarnuzzer, Sheyla Trefflich, Zhining Wang, John N. Weinstein, Lindsay Westlake, Jin Xu, Liming Yang, Christina Yau, Yang Zhao, Jingchun Zhu - Science 2018 cited by 1,356

  3. Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , - Cancer Cell 2010 cited by 2,358

  4. Comprehensive molecular characterization of mitochondrial genomes in human cancers

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Fátima Al‐Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape, Ludmil B. Alexandrov, Adrian Ally, Kathryn Alsop, Eva G. Álvarez, Fernanda Amary, Samirkumar B. Amin, Brice Aminou, Ole Ammerpohl, Matthew J. Anderson, Yeng Ang, Davide Antonello, Pavana Anur, Samuel Aparício, Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema, J. Todd Auman, Miriam R. R. Aure, Philip Awadalla, Marta Aymerich, Gary D. Bader, Adrian Baez‐Ortega, Matthew H. Bailey, Peter J. Bailey, Miruna Balasundaram, Saianand Balu, Pratiti Bandopadhayay, Rosamonde E. Banks, Stefano Barbi, Andrew P. Barbour, Jonathan Barenboim, Jill S. Barnholtz‐Sloan, Hugh Barr, Elisabet Barrera, John Bartlett, Javier Bartolomé, Claudio Bassi, Oliver F. Bathe, Daniel Baumhoer, Prashant Bavi, Stephen B. Baylin, Wojciech Bażant, Duncan Beardsmore, Timothy A. Beck, Sam Behjati, Andreas Behren, Beifang Niu, Cindy Bell, Sergi Beltrán, Christopher C. Benz, Andrew Berchuck, Anke Bergmann, Erik N. Bergstrom, Benjamin P. Berman, Daniel M. Berney, Stephan H. Bernhart, Rameen Beroukhim, Mario Berríos and 1,241 more - Nature Genetics 2020 cited by 515

  5. The Genome Sequence of Drosophila melanogaster

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , George L. Gabor, Miklós, Josep F. Abril, Anna Agbayani, Hui-Jin An, Cynthia Andrews‐Pfannkoch, Danita Baldwin, Richard M. Ballew, Anand Basu, James Baxendale, Leyla Bayraktaroglu, Ellen M. Beasley, Karen Beeson, Panayiotis V. Benos, Benjamin P. Berman, Deepali Bhandari, Slava Bolshakov, Dana Borkova, Michael R. Botchan, John Bouck, Peter Brokstein, Phillipe Brottier, Kenneth C. Burtis, Dana Busam, H. Butler, Édouard Cadieu, Ishwar Chandra, J. Michael Cherry, Simon Cawley, Carl Dahlke, Lionel B. Davenport, Peter L. Davies, Beatriz de Pablos, Arthur L. Delcher, Zuoming Deng, Anne Deslattes Mays, Ian Dew, Suzanne M. Dietz, Kristina Dodson, Lisa Doup, Michael Downes, Shannon Dugan-Rocha, Boris C. Dunkov, Patrick Dunn, Kenneth J. Durbin, Carlos Evangelista, Concepción Ferraz, Steven Ferriera, Wolfgang Fleischmann, Carl Fosler, Andrei Gabrielian, Neha Garg, William M Gelbart, Ken Glasser, Anna Glodek, Fangcheng Gong, James H. Gorrell, Zhiping Gu, Ping Guan, Michael A. Harris, Nomi L. Harris, Damon A. Harvey, Thomas J. Heiman, Judith Hernandez, Jarrett Houck, Damon Hostin, Kathryn A. Houston, Timothy J. Howland, Ming-Hui Wei, Chinyere Ibegwam and 95 more - Science 2000 cited by 6,042

  6. DNA methylation loss in late-replicating domains is linked to mitotic cell division

    Authors: , , , , , , , - Nature Genetics 2018 cited by 452

  7. Granulocyte-Monocyte Progenitors and Monocyte-Dendritic Cell Progenitors Independently Produce Functionally Distinct Monocytes

    Authors: , , , , , , , , - Immunity 2017 cited by 477

  8. Exosomal MicroRNA Transfer Into Macrophages Mediates Cellular Postconditioning

    Authors: , , , , , , , - Circulation 2017 cited by 353

  9. The PsychENCODE project

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Nancy Francoeur, Menachem Fromer, Robert Gao, Kay Grennan, Jennifer Herstein, David H. Kavanagh, Nikolay A. Ivanov, Yan Jiang, Robert R. Kitchen, Alexey Kozlenkov, Marija Kundaković, Mingfeng Li, Zhen Li, Shuang Liu, Lara M. Mangravite, Eugenio Mattei, Eirene Markenscoff-Papadimitriou, Fábio C. P. Navarro, Nicole North, Larsson Omberg, David M. Panchision, Neelroop Parikshak, Jérémie Poschmann, Amanda J. Price, Michael Purcaro, Timothy E. Reddy, Panos Roussos, Shannon Schreiner, Soraya Scuderi, Robert Sebra, Mikihito Shibata, Annie W. Shieh, Mario Škarica, Wenjie Sun, Vivek Swarup, Amber Thomas, Junko Tsuji, Harm van Bakel, Daifeng Wang, Yongjun Wang, Kai Wang, Donna M. Werling, A. Jeremy Willsey, Heather Witt, Hyejung Won, Chloe C. Y. Wong, Gregory A. Wray, Emily Wu, Xuming Xu, Lijing Yao, Geetha Senthil, Thomas Lehner, Pamela Sklar, Nenad Šestan - Nature Neuroscience 2015 cited by 488

  10. Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing

    Authors: , , , , , , , , , , - Genome biology 2022 cited by 118

  11. Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules

    Authors: , , , , , - Genome Research 2012 cited by 481

  12. Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains

    Authors: , , , , , , , , , , , - Nature Genetics 2011 cited by 690

  13. Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , - Nature Communications 2018 cited by 239

  14. Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons’ Data

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Zhining Wang, Matthew A. Wyczalkowski, Liming Yang, Jean C. Zenklusen, Zhenyu Zhang, Han Liang, Michael S. Noble - Cell Systems 2019 cited by 199

  15. Global analysis of patterns of gene expression during Drosophilaembryogenesis

    Authors: , , , , , , , - Genome biology 2007 cited by 486

  16. Spatial intratumoral heterogeneity and temporal clonal evolution in esophageal squamous cell carcinoma

    Authors: , , , , , , , , , , , , , , , , , - Nature Genetics 2016 cited by 281

  17. Divergent mutational processes distinguish hypoxic and normoxic tumours

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Yeng Ang, Davide Antonello, Pavana Anur, Samuel Aparício, Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema, J. Todd Auman, Miriam R. R. Aure, Philip Awadalla, Marta Aymerich, Gary D. Bader, Adrian Baez‐Ortega, Matthew H. Bailey, Peter J. Bailey, Miruna Balasundaram, Saianand Balu, Pratiti Bandopadhayay, Rosamonde E. Banks, Stefano Barbi, Andrew P. Barbour, Jonathan Barenboim, Jill S. Barnholtz‐Sloan, Hugh Barr, Elisabet Barrera, John M.S. Bartlett, Javier Bartolomé, Claudio Bassi, Oliver F. Bathe, Daniel Baumhoer, Prashant Bavi, Stephen B. Baylin, Wojciech Bażant, Duncan Beardsmore, Tim Beck, Sam Behjati, Andreas Behren, Beifang Niu, Cindy Bell, Sergi Beltrán, Christopher C. Benz, Andrew Berchuck, Anke Bergmann, Erik N. Bergstrom, Benjamin P. Berman, Daniel M. Berney, Stephan H. Bernhart, Rameen Beroukhim, Mario Berríos, Samantha Bersani, Johanna Bertl, Miguel Betancourt, Vinayak Bhandari, Shriram G. Bhosle, Andrew V. Biankin, Matthias Bieg, Darell D. Bigner, Hans Binder, Ewan Birney, Michael J. Birrer, Nidhan K. Biswas, Bodil Bjerkehagen and 1,228 more - Nature Communications 2020 cited by 142

  18. ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles

    Authors: , , , , , , , - Bioinformatics, Bioinform. 2017 cited by 162

  19. Genomic and Epigenomic Heterogeneity of Hepatocellular Carcinoma

    Authors: , , , , , , , , , , , - Cancer Research 2017 cited by 242

  20. Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data

    Authors: , , , - Genome biology 2012 cited by 305

  21. BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies

    Authors: , , , , , , , , , , , , - Nucleic Acids Research 2024 cited by 44

  22. Inferring regulatory element landscapes and transcription factor networks from cancer methylomes

    Authors: , , , , - Genome Biology 2015 cited by 219

  23. Targetable BET proteins- and E2F1-dependent transcriptional program maintains the malignancy of glioblastoma

    Authors: , , , , , , , , , , , , , , , , , , , , , , , - National Academy of Sciences, Proceedings of the National Academy of Sciences 2018 cited by 122

  24. The role of DNA methylation in directing the functional organization of the cancer epigenome

    Authors: , , , , , , - Genome Research 2015 cited by 127