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Jody Clements

Active 2004–2025

41
Papers
30,264
Citations
35
h-index
41
i10-index

Citations

Citations per year for Jody Clements1896: 1 citations1967: 1 citations1975: 1 citations1984: 1 citations1986: 1 citations1987: 1 citations1988: 3 citations1990: 1 citations1995: 1 citations1996: 1 citations1997: 2 citations1999: 2 citations2000: 7 citations2002: 5 citations2003: 8 citations2004: 6 citations2005: 22 citations2006: 58 citations2007: 132 citations2008: 156 citations2009: 186 citations2010: 195 citations2011: 203 citations2012: 350 citations2013: 474 citations2014: 619 citations2015: 610 citations2016: 524 citations2017: 424 citations2018: 349 citations2019: 975 citations2020: 981 citations2021: 968 citations2022: 802 citations2023: 590 citations2024: 945 citations2025: 394 citations2026: 23 citations1897–1966: no citations, so these years are not shown1968–1974: no citations, so these years are not shown1976–1983: no citations, so these years are not shown1985: no citations, so this year is not shown1989: no citations, so this year is not shown1991–1994: no citations, so these years are not shown1998: no citations, so this year is not shown2001: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,911 citing papers, 25.5% of this breakdownChina: 2,059 citing papers, 13.4% of this breakdownUnited Kingdom: 1,149 citing papers, 7.5% of this breakdownGermany: 980 citing papers, 6.4% of this breakdownFrance: 579 citing papers, 3.8% of this breakdownCanada: 541 citing papers, 3.5% of this breakdownAustralia: 487 citing papers, 3.2% of this breakdownSpain: 382 citing papers, 2.5% of this breakdownItaly: 382 citing papers, 2.5% of this breakdownJapan: 382 citing papers, 2.5% of this breakdownNetherlands: 335 citing papers, 2.2% of this breakdownSwitzerland: 334 citing papers, 2.2% of this breakdown
0%25.5%Other 24.8%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology55%
  • Medicine13.9%
  • Agricultural and Biological Sciences11.4%
  • Neuroscience6.4%
  • Environmental Science4.8%
  • Immunology and Microbiology2.3%
  • Other6.2%

Topics

  • Genomics and Phylogenetic Studies5.9%
  • RNA and protein synthesis mechanisms2.7%
  • Cancer Genomics and Diagnostics2.6%
  • Bioinformatics and Genomic Networks2.4%
  • Machine Learning in Bioinformatics1.8%
  • Protein Structure and Dynamics1.6%
  • Other83%

Coauthors

All papers

Open in search
  1. HMMER web server: interactive sequence similarity searching

    Authors: Robert D. Finn, Jody Clements, Sean R. Eddy - Nucleic Acids Research, Nucleic Acids Res. 2011 cited by 6,406

  2. Pfam: the protein families database

    Authors: Robert D. Finn, Alex Bateman, Jody Clements, Penelope Coggill, Ruth Y. Eberhardt, Sean R. Eddy, Andreas Heger, Kirstie Hetherington, Liisa Holm, Jaina Mistry, Erik L. L. Sonnhammer, John G. Tate, Marco Punta - Nucleic Acids Research, Nucleic Acids Res. 2013 cited by 6,527

  3. A connectome and analysis of the adult Drosophila central brain

    Authors: Louis K. Scheffer, C. Shan Xu, Michał Januszewski, Zhiyuan Lu, Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Kazunori Shinomiya, Jeremy Maitlin-Shepard, Stuart Berg, Jody Clements, Philip M. Hubbard, William T. Katz, Lowell Umayam, Ting Zhao, David Ackerman, Tim Blakely, John Bogovic, Tom Dolafi, Dagmar Kainmueller, Takashi Kawase, Khaled Khairy, Laramie Leavitt, Peter H. Li, Larry Lindsey, Nicole Neubarth, Donald J. Olbris, Hideo Otsuna, Eric T. Trautman, Masayoshi Ito, Alexander Shakeel Bates, Jens Goldammer, Tanya Wolff, Robert Svirskas, Philipp Schlegel, Erika Neace, Christopher J Knecht, Chelsea X. Alvarado, Dennis Bailey, Samantha Ballinger, J Borycz, Brandon S Canino, Natasha Cheatham, Michael Cook, Marisa Dreher, Octave Duclos, Bryon Eubanks, Kelli Fairbanks, Samantha Finley-May, Nora Forknall, Audrey Francis, Gary Patrick Hopkins, Emily Joyce, Sungjin Kim, Nicole Kirk, Julie Kovalyak, Shirley A Lauchie, Alanna Lohff, Charli Maldonado, Emily A Manley, Sari McLin, Caroline Mooney, Miatta Ndama, Omotara Ogundeyi, Nneoma Okeoma, Christopher Ordish, Nicholas Padilla, Christopher Patrick, Tyler Paterson, Elliott Phillips, Emily M Phillips, Neha Rampally, Caitlin Ribeiro, Madelaine Robertson, Jon Thomson Rymer, Sean M Ryan, Megan Sammons, Anne K Scott, Ashley L Scott, Aya Shinomiya, Claire Smith, Kelsey Smith, Natalie Smith, Margaret A. Sobeski, Alia Suleiman, Jackie Swift, Satoko Takemura, Iris Talebi, Dorota Tarnogorska, Emily Tenshaw, Temour Tokhi, John J Walsh, Tansy Yang, Jane Anne Horne, Feng Li, Ruchi Parekh, Patricia K. Rivlin, Vivek Jayaraman, Marta Costa, Gregory S.X.E. Jefferis and 8 more - eLife 2020 cited by 1,224

  4. Whole-cell organelle segmentation in volume electron microscopy

    Authors: Larissa Heinrich, Davis Bennett, David Ackerman, Grace Park, John Bogovic, Nils Eckstein, Alyson Petruncio, Jody Clements, Song Pang, C. Shan Xu, Jan Funke, Wyatt Korff, Harald F. Hess, Jennifer Lippincott‐Schwartz, Stephan Saalfeld, Aubrey V. Weigel, COSEM Project Team, Riasat Ali, Rebecca Arruda, Rohit Bahtra, Destiny Nguyen - Nature 2021 cited by 304

  5. Patterns of somatic mutation in human cancer genomes

    Authors: Christopher Greenman, Philip Stephens, Raffaella Smith, Gillian L. Dalgliesh, Chris Hunter, Graham R. Bignell, Helen Davies, Jon W. Teague, Adam P. Butler, Claire Stevens, Sarah Edkins, Sarah O’Meara, Imre Västrik, Esther Schmidt, Tim Avis, Syd Barthorpe, Gurpreet Bhamra, Gemma Buck, Bhudipa Choudhury, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Kristian Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jon Hinton, Andy Jenkinson, David Jones, Andy Menzies, Tatiana Mironenko, Janet Perry, Keiran Raine, David Richardson, Rebecca Shepherd, Alexandra Small, Calli Tofts, Jennifer Varian, Tony Webb, Sofie West, Sara Widaa, Andy Yates, Daniel P. Cahill, David N. Louis, Peter Goldstraw, Andrew G. Nicholson, Francis Brasseur, Leendert H. J. Looijenga, Barbara L. Weber, Yoke-Eng Chiew, Anna DeFazio, Mel Greaves, Anthony R. Green, Peter J. Campbell, Ewan Birney, Douglas F. Easton, Georgia Chenevix‐Trench, Min-Han Tan, Sok Kean Khoo, Bin Tean Teh, Siu Tsan Yuen, Suet Yi Leung, Richard Wooster, P. Andrew Futreal, Michael R. Stratton - Nature 2007 cited by 3,147

  6. The Dfam database of repetitive DNA families

    Authors: Robert Hubley, Robert D. Finn, Jody Clements, Sean R. Eddy, Thomas A. Jones, Weidong Bao, Arian F. A. Smit, Travis J. Wheeler - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 883

  7. HMMER web server: 2015 update

    Authors: Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 999

  8. A searchable image resource of Drosophila GAL4 driver expression patterns with single neuron resolution

    Authors: Geoffrey W Meissner, Aljoscha Nern, Zachary Dorman, Gina M DePasquale, Kaitlyn Forster, Theresa V Gibney, Joanna H Hausenfluck, Yisheng He, Nirmala Iyer, Jennifer Jeter, Lauren Johnson, Rebecca M. Johnston, Kelley Lee, Brian Melton, Brianna Yarbrough, Christopher T Zugates, Jody Clements, Cristian Goina, Hideo Otsuna, Konrad Rokicki, Robert Svirskas, Yoshinori Aso, Gwyneth M Card, Barry J. Dickson, Erica Ehrhardt, Jens Goldammer, Masayoshi Ito, Dagmar Kainmueller, Wyatt Korff, Lisa Mais, Ryo Minegishi, Shigehiro Namiki, Gerald M. Rubin, Gabriella R Sterne, Tanya Wolff, Oz Malkesman, FlyLight Project Team - eLife 2023 cited by 127

  9. The Pfam protein families database

    Authors: Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn - Nucleic Acids Research, Nucleic Acids Res. 2011 cited by 3,780

  10. A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs

    Authors: Elena Rivas, Jody Clements, Sean R. Eddy - Nature Methods 2016 cited by 420

  11. The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website

    Authors: Sally Bamford, Elisabeth Dawson, Simon Forbes, Jody Clements, Roger Pettett, Ahmet Doǧan, Adrienne M. Flanagan, Jon W. Teague, PA Futreal, Michael R. Stratton, Richard Wooster - British Journal of Cancer 2004 cited by 1,297

  12. neuPrint: An open access tool for EM connectomics

    Authors: Stephen M. Plaza, Jody Clements, Tom Dolafi, Lowell A. Umayam, Nicole N. Neubarth, Louis K. Scheffer, Stuart E. Berg - Frontiers in Neuroinformatics, Frontiers Neuroinformatics 2022 cited by 146

  13. Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models

    Authors: Travis J. Wheeler, Jody Clements, Robert D. Finn - BMC Bioinformatics, BMC Bioinform. 2014 cited by 401

  14. Dfam: a database of repetitive DNA based on profile hidden Markov models

    Authors: Travis J. Wheeler, Jody Clements, Sean R. Eddy, Robert Hubley, Thomas A. Jones, Jerzy Jurka, Arian F. A. Smit, Robert D. Finn - Nucleic Acids Research, Nucleic Acids Res. 2012 cited by 325

  15. Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala

    Authors: Timothy P. O’Leary, Kaitlin E. Sullivan, Lihua Wang, Jody Clements, Andrew L. Lemire, Mark S. Cembrowski - eLife 2020 cited by 93

  16. Connectome-driven neural inventory of a complete visual system

    Authors: Aljoscha Nern, Frank Loesche, Shin-ya Takemura, Laura E. Burnett, Marisa Dreher, Eyal Gruntman, Judith Hoeller, Gary B. Huang, Michał Januszewski, Nathan C Klapoetke, Sanna Koskela, Kit D. Longden, Zhiyuan Lu, Stephan Preibisch, Wei Qiu, Edward M. Rogers, Pavithraa Seenivasan, Arthur Zhao, John Bogovic, Brandon S Canino, Jody Clements, Michael Cook, Samantha Finley-May, Miriam A Flynn, Alexandra M. C. Fragniere, Imran Hameed, Kenneth J. Hayworth, Gary Patrick Hopkins, Philip M. Hubbard, William T. Katz, Julie Kovalyak, Shirley A Lauchie, Meghan Leonard, Alanna Lohff, Charli Maldonado, Caroline Mooney, Nneoma Okeoma, Donald J. Olbris, Christopher Ordish, Tyler Paterson, Emily M Phillips, Tobias Pietzsch, Jennifer Rivas Salinas, Patricia K. Rivlin, Philipp Schlegel, Ashley L Scott, Louis A Scuderi, Satoko Takemura, Iris Talebi, Alexander Thomson, Eric T. Trautman, Lowell Umayam, Claire Smith, John J Walsh, C. Shan Xu, Emily A Yakal, Tansy Yang, Ting Zhao, Jan Funke, Reed George, Harald F. Hess, Gregory S.X.E. Jefferis, Christopher Knecht, Wyatt Korff, Stephen M. Plaza, Sandro Romani, Stephan Saalfeld, Louis K. Scheffer, Stuart Berg, Gerald M. Rubin, Michael B. Reiser - Nature 2024 cited by 50

  17. A Hypermutation Phenotype and Somatic MSH6 Mutations in Recurrent Human Malignant Gliomas after Alkylator Chemotherapy

    Authors: Chris Hunter, Raffaella Smith, Daniel P. Cahill, Philip Stephens, Claire Stevens, Jon W. Teague, Chris Greenman, Sarah Edkins, Graham R. Bignell, Helen Davies, Sarah O’Meara, Adrian G. Parker, Tim Avis, Syd Barthorpe, Lisa Brackenbury, Gemma Buck, Adam P. Butler, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Matthew Gorton, Kristian Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jonathon Hinton, Andy Jenkinson, David Jones, Vivienne Kosmidou, Ross Laman, Richard Lugg, Andrew Menzies, Janet Perry, Robert Petty, Keiran Raine, David Richardson, Rebecca Shepherd, Alexandra Small, Helen Solomon, Calli Tofts, Jennifer Varian, Sofie West, Sara Widaa, Andy Yates, Douglas F. Easton, Gregory J. Riggins, Jennifer E. Roy, Kymberly K. Levine, Wolf Mueller, Tracy T. Batchelor, David N. Louis, Michael R. Stratton, P. Andrew Futreal, Richard Wooster - Cancer Research 2006 cited by 435

  18. Mutation analysis of 24 known cancer genes in the NCI-60 cell line set

    Authors: Ogechi Ikediobi, Helen Davies, Graham R. Bignell, Sarah Edkins, Claire Stevens, Sarah O’Meara, Thomas Santarius, Tim Avis, Syd Barthorpe, Lisa Brackenbury, Gemma Buck, Adam P. Butler, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Kristian Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jonathan Hinton, Chris Hunter, Andy Jenkinson, David Jones, Vivienne Kosmidou, Richard Lugg, Andrew Menzies, Tatiana Mironenko, Adrian G. Parker, Janet Perry, Keiran Raine, David Richardson, Rebecca Shepherd, Alex Small, Raffaella Smith, Helen Solomon, Philip Stephens, Jon W. Teague, Calli Tofts, Jennifer Varian, Tony Webb, Sofie West, Sara Widaa, Andy Yates, William C. Reinhold, John N. Weinstein, Michael R. Stratton, P. Andrew Futreal, Richard Wooster - Molecular Cancer Therapeutics 2006 cited by 442

  19. A Connectome of the Male Drosophila Ventral Nerve Cord

    Authors: Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Michał Januszewski, Zhiyuan Lu, Elizabeth C. Marin, Stephan Preibisch, C. Shan Xu, John Bogovic, Andrew S Champion, Han SJ Cheong, Marta Costa, Katharina Eichler, William T. Katz, Christopher Knecht, Feng Li, Billy J Morris, Christopher Ordish, Patricia K. Rivlin, Philipp Schlegel, Kazunori Shinomiya, Tomke Stürner, Ting Zhao, Griffin Badalamente, Dennis Bailey, Paul Brooks, Brandon S Canino, Jody Clements, Michael Cook, Octave Duclos, Christopher R Dunne, Kelli Fairbanks, Siqi Fang, Samantha Finley-May, Audrey Francis, Reed George, Marina Gkantia, Kyle Harrington, Gary Patrick Hopkins, Joseph Hsu, Philip M. Hubbard, Alexandre Javier, Dagmar Kainmueller, Wyatt Korff, Julie Kovalyak, Dominik Krzemiński, Shirley A Lauchie, Alanna Lohff, Charli Maldonado, Emily A Manley, Caroline Mooney, Erika Neace, Matthew Nichols, Omotara Ogundeyi, Nneoma Okeoma, Tyler Paterson, Elliott Phillips, Emily M Phillips, Caitlin Ribeiro, Sean M Ryan, Jon Thomson Rymer, Anne K Scott, Ashley L Scott, David Shepherd, Aya Shinomiya, Claire Smith, Natalie Smith, Alia Suleiman, Satoko Takemura, Iris Talebi, Imaan FM Tamimi, Eric T. Trautman, Lowell Umayam, John J Walsh, Tansy Yang, Gerald M. Rubin, Louis K. Scheffer, Jan Funke, Stephan Saalfeld, Harald F. Hess, Stephen M. Plaza, Gwyneth M Card, Gregory S.X.E. Jefferis, Stuart Berg - 2023 cited by 58

  20. Neuronal cell types, projections, and spatial organization of the central amygdala

    Authors: Timothy P. O’Leary, Rennie Kendrick, Brianna N. Bristow, Kaitlin E. Sullivan, Lihua Wang, Jody Clements, Andrew L. Lemire, Mark S. Cembrowski - iScience 2022 cited by 44

  21. Spatially patterned excitatory neuron subtypes and projections of the claustrum

    Authors: Sarah R. Erwin, Brianna N. Bristow, Kaitlin E. Sullivan, Rennie Kendrick, Brian A. Marriott, Lihua Wang, Jody Clements, Andrew L. Lemire, Jesse Jackson, Mark S. Cembrowski - eLife 2021 cited by 57

  22. The subiculum is a patchwork of discrete subregions

    Authors: Mark S. Cembrowski, Lihua Wang, Andrew L. Lemire, Monique Copeland, Salvatore F. DiLisio, Jody Clements, Nelson Spruston - eLife 2018 cited by 120

  23. Sharp cell-type-identity changes differentiate the retrosplenial cortex from the neocortex

    Authors: Kaitlin E. Sullivan, Larissa Kraus, Margarita Kapustina, Lihua Wang, Tara R. Stach, Andrew L. Lemire, Jody Clements, Mark S. Cembrowski - Cell Reports 2023 cited by 25

  24. The Catalogue of Somatic Mutations in Cancer (COSMIC)

    Authors: Simon Forbes, Gurpreet Bhamra, Sally Bamford, Elisabeth Dawson, Chai Yin Kok, Jody Clements, Andrew Menzies, Jon W. Teague, P. Andrew Futreal, Michael R. Stratton - Current Protocols in Human Genetics 2008 cited by 918