Thomas A. Jones
Active 1968–2023
- 51
- Papers
- 18,623
- Citations
- 34
- h-index
- 43
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology57.3%
- Agricultural and Biological Sciences11.7%
- Medicine10.7%
- Immunology and Microbiology3.9%
- Materials Science3.1%
- Environmental Science2.9%
- Other10.4%
Topics
- Genomics and Phylogenetic Studies6.4%
- Chromosomal and Genetic Variations5.6%
- RNA and protein synthesis mechanisms5.5%
- Genomics and Chromatin Dynamics2.6%
- RNA modifications and cancer2.5%
- CRISPR and Genetic Engineering2.3%
- Other75.1%
Coauthors
- Sean R. Eddy6
- Sundar A. Christopher6
- Gerard J. Kleywegt4
- Robert D. Finn3
- Arian F. A. Smit2
- Bengt Mannervik2
- Christina Divne2
- Elena Rivas2
- Hans Eklund2
- J. Uppenberg2
- Jean Pierre Samama2
- Jerry Ståhlberg2
- Jody Clements2
- Patrick Minx2
- Robert Hubley2
- Robert S. Fulton2
- Shamkant Patkar2
- Travis J. Wheeler2
- Tuula T. Teeri2
- A. Nigrini1
- Aake Engstroem1
- Aaron D. Goldman1
- Aaron J. Thomas1
- Adam Stein1
All papers
- Initial sequencing and comparative analysis of the mouse genome
Authors: Asif T. Chinwalla, R Waterston, Kerstin Lindblad‐Toh, Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, Joanne O. Nelson, Robert Baertsch, J. Bailey, K. F. Barlow, Stephan Beck, E. Berry, Bruce W. Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R. Brent, Daniel G. Brown, S.D.M. Brown, Carol J. Bult, John H. Burton, Jonathan A. Butler, R. Duncan Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif Chinwalla, Deanna M. Church, Michèle Clamp, Christopher Clee, Francis S. Collins, Lisa L. Cook, Richard R. Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, J. Davies, Kimberly D. Delehaunty, Justin Deri, Emmanouil T. Dermitzakis, Colin N. Dewey, Nicholas J. Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M. Dunn, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam L. Felsenfeld, Ginger Fewell, Paul Flicek, Karen Foley, Wayne N. Frankel, Lucinda A. Fulton, Robert S. Fulton, Terrence S. Furey, Diane Gage, Richard A. Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina Graves, Eric D. Green, Simon G. Gregory, Roderic Guigó, Mark S. Guyer, Ross C. Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W. Hillier, James Cuff, Wratko Hlavina, Timothy R. Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian J. Jackson, David B. Jaffe, L. Steven Johnson, Matthew C. Jones, Thomas A. Jones, Ann Joy, Michael Kamal and 123 more - Nature 2002 cited by 7,293
- The Dfam database of repetitive DNA families
Authors: Robert Hubley, Robert D. Finn, Jody Clements, Sean R. Eddy, Thomas A. Jones, Weidong Bao, Arian F. A. Smit, Travis J. Wheeler - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 883
- Rfam 12.0: updates to the RNA families database
Authors: Eric P. Nawrocki, Sarah W. Burge, Alex Bateman, Jennifer Daub, Ruth Y. Eberhardt, Sean R. Eddy, Evan W. Floden, Paul P. Gardner, Thomas A. Jones, John G. Tate, Robert D. Finn - Nucleic Acids Research, Nucleic Acids Res. 2014 cited by 1,149
- The sequence, crystal structure determination and refinement of two crystal forms of lipase B from Candida antarctica
Authors: J. Uppenberg, Mogens Trier Hansen, Shamkant Patkar, Thomas A. Jones - Structure 1994 cited by 903
- Dfam: a database of repetitive DNA based on profile hidden Markov models
Authors: Travis J. Wheeler, Jody Clements, Sean R. Eddy, Robert Hubley, Thomas A. Jones, Jerzy Jurka, Arian F. A. Smit, Robert D. Finn - Nucleic Acids Research, Nucleic Acids Res. 2012 cited by 325
- Crystallographic and molecular-modeling studies of lipase B from Candida antarctica reveal a stereospecificity pocket for secondary alcohols
Authors: J. Uppenberg, N. OEHRNER, Martin Norin, Karl Hult, Gerard J. Kleywegt, Shamkant Patkar, Viggo Waagen, T. Anthonsen, Thomas A. Jones - Biochemistry 1995 cited by 511
- A synthetic IgG-binding domain based on staphylococcal protein A
Authors: Björn Nilsson, Tomas Moks, Birger Jansson, Lars Abrahmsén, Anette Elmblad, Erik Holmgren, Christina Henrichson, Thomas A. Jones, Mathias Uhlén - Protein Engineering Design and Selection 1987 cited by 762
- Shifting paradigms in restoration of the world's coral reefs
Authors: Madeleine J. H. van Oppen, Ruth D. Gates, Linda L. Blackall, Neal E. Cantin, Leela J. Chakravarti, Wing Yan Chan, Craig Cormick, Angela J. Crean, Katarina Damjanovic, Hannah E. Epstein, Peter L. Harrison, Thomas A. Jones, Margaret W. Miller, Rachel Pears, Lesa M. Peplow, David A. Raftos, Britta Schaffelke, Kristen Stewart, Gergely Torda, David Wachenfeld, Andrew R. Weeks, Hollie M. Putnam - Global Change Biology 2017 cited by 462
- The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes
Authors: Estienne C. Swart, John R. Bracht, Vincent Magrini, Patrick Minx, Xiao Chen, Yi Zhou, Jaspreet S. Khurana, Aaron D. Goldman, Mariusz Nowacki, Klaas Schotanus, Seolkyoung Jung, Robert S. Fulton, Amy Ly, Sean McGrath, Kevin Haub, Jessica L. Wiggins, Donna Storton, John C. Matese, Lance Parsons, Wei‐Jen Chang, Michael Bowen, Nicholas A. Stover, Thomas A. Jones, Sean R. Eddy, Glenn Herrick, Thomas G. Doak, Richard K. Wilson, Elaine R. Mardis, Laura F. Landweber - PLoS Biology 2013 cited by 233
- Detection, delineation, measurement and display of cavities in macromolecular structures
Authors: Gerard J. Kleywegt, Thomas A. Jones - Acta Crystallographica Section D Biological Crystallography 1994 cited by 971
- High-resolution crystal structures reveal how a cellulose chain is bound in the 50 Å long tunnel of cellobiohydrolase I from Trichoderma reesei 1 1Edited by K. Nagai
Authors: Christina Divne, Jerry Ståhlberg, Tuula T. Teeri, Thomas A. Jones - Journal of Molecular Biology 1998 cited by 435
- The solution conformation of the antibacterial peptide cecropin A: a nuclear magnetic resonance and dynamical simulated annealing study
Authors: Tadeusz A. Holak, Aake Engstroem, P. Kraulis, Gunnar Lindeberg, H. Bennich, Thomas A. Jones, Angela M. Gronenborn, G. Marius Clore - Biochemistry 1988 cited by 283
- Loss of H3K4 methylation destabilizes gene expression patterns and physiological functions in adult murine cardiomyocytes
Authors: Adam Stein, Thomas A. Jones, Todd J. Herron, Sanjeevkumar R. Patel, Sharlene M. Day, Sami F. Noujaim, Michelle L. Milstein, Matthew Klos, Philip Furspan, José Jalife, Gregory R. Dressler - Journal of Clinical Investigation 2011 cited by 126
- Discovery of 17 conserved structural RNAs in fungi
Authors: William Gao, Thomas A. Jones, Elena Rivas - Nucleic Acids Research 2021 cited by 20
- DNA sequence-based mapping and comparative genomics of the St genome of Pseudoroegneria spicata (Pursh) Á. Löve versus wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.)
Authors: Richard R.‐C. Wang, Xingfeng Li, Matthew D. Robbins, Steve Larson, Shaun Bushman, Thomas A. Jones, Aaron J. Thomas - Genome 2020 cited by 19
- Computational identification of noncoding RNAs in E. coli by comparative genomics
Authors: Elena Rivas, Robert J. Klein, Thomas A. Jones, Sean R. Eddy - Current Biology 2001 cited by 399
- Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes
Authors: Jennifer C. Darnell, Claire Fraser, Olga Mostovetsky, Giovanni Stefani, Thomas A. Jones, Sean R. Eddy, Robert B. Darnell - Genes & Development 2005 cited by 289
- Calculation of mass transfer in geochemical processes involving aqueous solutions
Authors: Harold C. Helgeson, Thomas H. Brown, A. Nigrini, Thomas A. Jones - Geochimica et Cosmochimica Acta 1970 cited by 251
- Association of N‐acetyl Loline and N‐formyl Loline with Epichloe typhina in Tall Fescue1
Authors: L. P. Bush, P. L. Cornelius, R. C. Buckner, D.R. Varney, R. A. Chapman, P. B. Burrus, Charles Kennedy, Thomas A. Jones, Mary Jane Saunders - Crop Science 1982 cited by 97
- Functional significance of arginine 15 in the active site of human class alpha glutathione transferase A1-1
Authors: Robert Björnestedt, Gun Stenberg, Mikael Widersten, Philip G. Board, Irmgard Sinning, Thomas A. Jones, Bengt Mannervik - Journal of Molecular Biology 1995 cited by 92
- Comparison of family 12 glycoside hydrolases and recruited substitutions important for thermal stability
Authors: Mats Sandgren, Peter Gualfetti, Andrew M. Shaw, L.S. Gross, M. Saldajeno, Anthony G. Day, Thomas A. Jones, Colin Mitchinson - Protein Science 2003 cited by 81
- Seed production areas are crucial to conservation outcomes: benefits and risks of an emerging restoration tool
Authors: Jack Zinnen, Linda Broadhurst, Paul Gibson‐Roy, Thomas A. Jones, Jeffrey W. Matthews - Biodiversity and Conservation 2021 cited by 33
- Progress and challenges with Warn-on-Forecast
Authors: David J. Stensrud, Louis J. Wicker, Ming Xue, Daniel T. Dawson, Nusrat Yussouf, Dustan M. Wheatley, Therese E. Thompson, Nathan Snook, Travis M. Smith, Alexander D. Schenkman, Corey K. Potvin, Edward R. Mansell, Ting Lei, Kristin M. Kuhlman, Youngsun Jung, Thomas A. Jones, Jidong Gao, Michael C. Coniglio, Harold E. Brooks, Keith Brewster - Atmospheric Research 2012 cited by 209
- Crystallization, Crystal Structure Analysis and Atomic Model of the Complex Formed by a Human Fc Fragment and Fragment B of Protein A fromStaphylococcus aureus
Authors: J. Deisenhofer, Thomas A. Jones, Robert Huber, Jörgen Sjödahl, John Sjöquist - Hoppe-Seyler´s Zeitschrift für physiologische Chemie 1978 cited by 178
