John W.M. Martens
Active 1995–2025
- Also published as
- John W. M. Martens
- 170
- Papers
- 26,998
- Citations
- 86
- h-index
- 165
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology57.9%
- Medicine35.5%
- Immunology and Microbiology2%
- Engineering1%
- Chemistry0.8%
- Agricultural and Biological Sciences0.7%
- Other2.1%
Topics
- Cancer Genomics and Diagnostics9%
- Cancer Cells and Metastasis4.5%
- Cancer-related molecular mechanisms research2.7%
- Epigenetics and DNA Methylation2.7%
- DNA Repair Mechanisms2.6%
- RNA modifications and cancer2.5%
- Other76%
Coauthors
- John A. Foekens52
- Marcel Smid49
- Anieta M. Sieuwerts47
- Stefan Sleijfer35
- Jaco Kraan19
- Agnes Jager16
- Carolien H. M. van Deurzen16
- Paul N. Span16
- Helen Davies14
- Martijn P. Lolkema14
- Saskia M. Wilting14
- Vanja de Weerd14
- Maxime P. Look13
- Maurice P.H.M. Jansen12
- Sancha Martin12
- Serena Nik‐Zainal12
- Corine M. Beaufort11
- Mieke Timmermans11
- Bob van de Water10
- Jan G.M. Klijn10
- Ronald de Wit10
- Andrea L. Richardson9
- Antoinette Hollestelle9
- Fred C.G.J. Sweep9
All papers
- Landscape of somatic mutations in 560 breast cancer whole-genome sequences
Authors: Serena Nik‐Zainal, Helen Davies, Johan Staaf, Manasa Ramakrishna, Dominik Głodzik, Xueqing Zou, Iñigo Martincorena, Ludmil B. Alexandrov, Sancha Martin, David C. Wedge, Peter Van Loo, Young Seok Ju, Marcel Smid, Arie B. Brinkman, Sandro Morganella, Miriam R. R. Aure, Ole Christian Lingjærde, Anita Langerød, Markus Ringnér, Sung‐Min Ahn, Sandrine Boyault, Jane E. Brock, Annegien Broeks, Adam P. Butler, Christine Desmedt, Luc Dirix, Serge Dronov, Aquila Fatima, John A. Foekens, Moritz Gerstung, Gerrit K. Hooijer, Se Jin Jang, David Jones, Hyung-Yong Kim, Tari King, Savitri Krishnamurthy, Hee Jin Lee, Jeong‐Yeon Lee, Yilong Li, Stuart McLaren, Andrew Menzies, Ville Mustonen, Sarah O’Meara, Iris Pauporté, Xavier Pivot, Colin A. Purdie, Keiran Raine, Kamna Ramakrishnan, F. Germán Rodríguez-González, Gilles Romieu, Anieta M. Sieuwerts, Peter T. Simpson, Rebecca Shepherd, Lucy Stebbings, Olafur A. Stefansson, Jon W. Teague, Stefania Tommasi, Isabelle Treilleux, Gert G. Van den Eynden, Peter Vermeulen, Anne Vincent‐Salomon, Lucy Yates, Carlos Caldas, Laura van’t Veer, Andrew Tutt, Stian Knappskog, Benita Kiat Tee Tan, Jos Jonkers, Åke Borg, Naoto T. Ueno, Christos Sotiriou, Alain Viari, P. Andrew Futreal, Peter J. Campbell, Paul N. Span, Steven Van Laere, Sunil R. Lakhani, Jorunn E. Eyfjord, Alastair M. Thompson, Ewan Birney, Hendrik G. Stunnenberg, Marc J. van de Vijver, John W.M. Martens, Anne‐Lise Børresen‐Dale, Andrea L. Richardson, Gu Kong, Gilles Thomas, Michael R. Stratton - Nature 2016 cited by 2,382
- HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures
Authors: Helen Davies, Dominik Głodzik, Sandro Morganella, Lucy Yates, Johan Staaf, Xueqing Zou, Manasa Ramakrishna, Sancha Martin, Sandrine Boyault, Anieta M. Sieuwerts, Peter T. Simpson, Tari A. King, Keiran Raine, Jórunn E. Eyfjörd, Gu Kong, Åke Borg, Ewan Birney, Hendrik G. Stunnenberg, Marc J. van de Vijver, Anne-Lise Børresen-Dale, John W.M. Martens, Paul N. Span, Sunil R. Lakhani, Anne Vincent‐Salomon, Christos Sotiriou, Andrew Tutt, Alastair M. Thompson, Steven Van Laere, Andrea L. Richardson, Alain Viari, Peter J. Campbell, Michael R. Stratton, Serena Nik‐Zainal - Nature Medicine 2017 cited by 1,136
- Mutational Processes Molding the Genomes of 21 Breast Cancers
Authors: Serena Nik‐Zainal, Ludmil B. Alexandrov, David C. Wedge, Peter Van Loo, Christopher Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy Stebbings, Andrew Menzies, Sancha Martin, Kenric Leung, Lina Chen, Catherine Leroy, Manasa Ramakrishna, Richard Rance, King Wai Lau, Laura Mudie, Ignacio Varela, David J. McBride, Graham R. Bignell, Susanna L. Cooke, Adam Shlien, John Gamble, Ian Whitmore, Mark Maddison, Patrick Tarpey, Helen Davies, Elli Papaemmanuil, Philip J. Stephens, Stuart McLaren, Adam P. Butler, Jon W. Teague, Göran Jönsson, Judy E. Garber, Daniel P. Silver, Penelope Miron, Aquila Fatima, Sandrine Boyault, Anita Langerød, Andrew Tutt, John W.M. Martens, Samuel Aparício, Åke Borg, Anne Vincent Salomon, Gilles Thomas, Anne‐Lise Børresen‐Dale, Andrea L. Richardson, Michael S. Neuberger, P. Andrew Futreal, Peter J. Campbell, Michael R. Stratton - Cell 2012 cited by 2,023
- Plasticity of Lgr5-Negative Cancer Cells Drives Metastasis in Colorectal Cancer
Authors: Arianna Fumagalli, Koen C. Oost, Lennart Kester, Jessica Morgner, Laura Bornes, Lotte Bruens, Lisa Spaargaren, Maria Azkanaz, Tim Schelfhorst, Evelyne Beerling, Maria C. Heinz, Daniel Postrach, Daniëlle Seinstra, Anieta M. Sieuwerts, John W.M. Martens, Stefan van der Elst, Martijn v. Baalen, Debajit Bhowmick, Nienke Vrisekoop, Saskia I. J. Ellenbroek, Saskia J.E. Suijkerbuijk, Hugo J.G. Snippert, Jacco van Rheenen - Cell stem cell 2020 cited by 309
- Spatial immunophenotypes predict response to anti-PD1 treatment and capture distinct paths of T cell evasion in triple negative breast cancer
Authors: Dora Hammerl, John W.M. Martens, Mieke Timmermans, Marcel Smid, Anita Trapman-Jansen, Renée Foekens, Olga I. Isaeva, Leonie Voorwerk, Hayri E. Balcıoğlu, Rebecca Wijers, Iris Nederlof, Roberto Salgado, Hugo M. Horlings, Marleen Kok, Reno Debets - Nature Communications 2021 cited by 251
- Genomic Evolution of Breast Cancer Metastasis and Relapse
Authors: Lucy Yates, Stian Knappskog, David C. Wedge, James H. R. Farmery, Santiago González, Iñigo Martincorena, Ludmil B. Alexandrov, Peter Van Loo, Hans Kristian Haugland, Peer Kaare Lilleng, Gunes Gundem, Moritz Gerstung, Elli Pappaemmanuil, Patrycja Gazińska, Shriram G. Bhosle, David Jones, Keiran Raine, Laura Mudie, Calli Latimer, Elinor J. Sawyer, Christine Desmedt, Christos Sotiriou, Michael R. Stratton, Anieta M. Sieuwerts, Andy G. Lynch, John W.M. Martens, Andrea L. Richardson, Andrew Tutt, Per Eystein Lønning, Peter J. Campbell - Cancer Cell 2017 cited by 693
- Tumor-Infiltrating Lymphocytes in Triple-Negative Breast Cancer
Authors: Roberto A. Leon‐Ferre, Sarah Flora Jonas, Roberto Salgado, Sherene Loi, Vincent de Jong, Jodi M. Carter, Torsten O. Nielsen, Samuel Leung, Nazia Riaz, Stephen Chia, Gérôme Jules-Clément, Giuseppe Curigliano, Carmen Criscitiello, Vincent Cockenpot, Matteo Lambertini, Vera J. Suman, Barbro Linderholm, John W.M. Martens, Carolien H. M. van Deurzen, Anne Timmermans, Tatsunori Shimoi, Shu Yazaki, Masayuki Yoshida, Sung‐Bae Kim, Hee Jin Lee, Maria Vittoria Dieci, Guillaume Bataillon, Anne Vincent‐Salomon, Fabrice André, Marleen Kok, Sabine C. Linn, Matthew P. Goetz, Stefan Michiels, International Immuno-Oncology Biomarker Working Group - JAMA 2024 cited by 199
- The landscape of cancer genes and mutational processes in breast cancer
Authors: Philip J. Stephens, Patrick Tarpey, Helen Davies, Peter Van Loo, Chris Greenman, David C. Wedge, Serena Nik‐Zainal, Sancha Martin, Ignacio Varela, Graham R. Bignell, Lucy Yates, Elli Papaemmanuil, David Beare, Adam Butler, Angela Cheverton, John Gamble, Jonathan Hinton, Mingming Jia, Alagu Jayakumar, David Jones, Calli Latimer, King Wai Lau, Stuart McLaren, David J. McBride, Andrew Menzies, Laura Mudie, Keiran Raine, Roland Rad, Michael Spencer Chapman, Jon W. Teague, Douglas F. Easton, Anita Langerød, Ming Ta Michael Lee, Chen‐Yang Shen, Benita Tan Kiat Tee, Bernice Wong Huimin, Annegien Broeks, Ana Cristina Vargas, Gulisa Turashvili, John W.M. Martens, Aquila Fatima, Penelope Miron, Suet‐Feung Chin, Gilles Thomas, Sandrine Boyault, Odette Mariani, Sunil R. Lakhani, Marc J. van de Vijver, Laura van ‘t Veer, John A. Foekens, Christine Desmedt, Christos Sotiriou, Andrew Tutt, Carlos Caldas, Jorge S. Reis‐Filho, Samuel Aparício, Anne Vincent‐Salomon, Anne‐Lise Børresen‐Dale, Andrea L. Richardson, Peter J. Campbell, P. Andrew Futreal, Michael R. Stratton - Nature 2012 cited by 1,731
- Subtypes of Breast Cancer Show Preferential Site of Relapse
Authors: Marcel Smid, Yixin Wang, Yi Zhang, Anieta M. Sieuwerts, Jack X. Yu, Jan G.M. Klijn, John A. Foekens, John W.M. Martens - Cancer Research 2008 cited by 837
- 5-Fluorouracil treatment induces characteristic T>G mutations in human cancer
Authors: Sharon Christensen, Bastiaan van der Roest, Nicolle Besselink, Roel Janssen, Sander Boymans, John W.M. Martens, Marie‐Laure Yaspo, Peter Priestley, Ewart Kuijk, Edwin Cuppen, Arne van Hoeck - Nature Communications 2019 cited by 208
- Molecular characterization of colorectal cancer related peritoneal metastatic disease
Authors: Kristiaan Lenos, Sander Bach, Leandro F. Moreno, Sanne ten Hoorn, Nina R. Sluiter, Sanne Bootsma, Felipe A. Vieira Braga, Lisanne E. Nijman, Tom van den Bosch, Daniël M. Miedema, Erik van Dijk, Bauke Ylstra, Ruth Kulicke, Fred P. Davis, Nicolas Stransky, Gromoslaw A. Smolen, Robert R.J. Coebergh van den Braak, Jan N.M. IJzermans, John W.M. Martens, Sally Hallam, Andrew D. Beggs, Geert J.P.L. Kops, Nico Lansu, Vivian P. Bastiaenen, Charlotte E.L. Klaver, Maria C. Lecca, Khalid El Makrini, Clara C. Elbers, Mark P.G. Dings, Carel J.M. van Noesel, Onno Kranenburg, Jan Paul Medema, Jan Köster, Lianne Koens, Cornelis J.A. Punt, Pieter J. Tanis, Ignace H. J. T. de Hingh, Maarten F. Bijlsma, Jurriaan B. Tuynman, Louis Vermeulen - Nature Communications 2022 cited by 124
- The genomic landscape of metastatic breast cancer highlights changes in mutation and signature frequencies
Authors: Lindsay Angus, Marcel Smid, Saskia M. Wilting, Job van Riet, Arne van Hoeck, Luan Nguyen, Serena Nik‐Zainal, Tessa G. Steenbruggen, Vivianne C. G. Tjan‐Heijnen, Mariëtte Labots, J.M.G.H. van Riel, Haiko J. Bloemendal, Neeltje Steeghs, Martijn P. Lolkema, Emile E. Voest, Harmen J.G. van de Werken, Agnes Jager, Edwin Cuppen, Stefan Sleijfer, John W.M. Martens - Nature Genetics 2019 cited by 333
- The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact
Authors: Lisanne F. van Dessel, Job van Riet, Minke Smits, Yanyun Zhu, Paul Hamberg, Michiel S. van der Heijden, Andries M. Bergman, Inge M. van Oort, Ronald de Wit, Emile E. Voest, Neeltje Steeghs, Takafumi N. Yamaguchi, Julie Livingstone, Paul C. Boutros, John W.M. Martens, Stefan Sleijfer, Edwin Cuppen, Wilbert Zwart, Harmen J.G. van de Werken, Niven Mehra, Martijn P. Lolkema - Nature Communications 2019 cited by 209
- Characterization of male breast cancer: results of the EORTC 10085/TBCRC/BIG/NABCG International Male Breast Cancer Program
Authors: Fátima Cardoso, John M.S. Bartlett, Leen Slaets, Carolien H. M. van Deurzen, Elise van Leeuwen-Stok, Peggy L. Porter, Barbro Linderholm, Ingrid Hedenfalk, C.P. Schröder, John W.M. Martens, Jane Bayani, CJ van Asperen, Melissa P. Murray, Clifford A. Hudis, Lavinia P. Middleton, Joanna Vermeij, Kevin Punie, Judith Fraser, Monika Nowaczyk, Isabel T. Rubio, Stefan Aebi, Catherine M. Kelly, Kathryn J. Ruddy, Eric P. Winer, Cecilia Nilsson, Lissandra Dal Lago, Larissa A. Korde, Kim Benstead, Oliver Bögler, Theodora Goulioti, Aleksandra Peric, Saskia Litière, K.C. Aalders, Coralie Poncet, Konstantinos Tryfonidis, Sharon H. Giordano - Annals of Oncology 2017 cited by 399
- Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons
Authors: Marcel Smid, Robert R. J. Coebergh van den Braak, Harmen J. G. van de Werken, Job van Riet, Anne van Galen, Vanja de Weerd, Michelle van der Vlugt-Daane, Sandra I. Bril, Zarina S. Lalmahomed, Wigard P. Kloosterman, Saskia M. Wilting, John A. Foekens, Jan Ijzermans, Peter Paul L. O. Coene, Jan Willem T. Dekker, David D. E. Zimmerman, Geert W. M. Tetteroo, Wouter J. Vles, Wietske W. Vrijland, Rolf Torenbeek, Mike Kliffen, J. H. Carel Meijer, Anneke A. vd Wurff, John W. M. Martens, Anieta M. Sieuwerts - BMC Bioinformatics, BMC Bioinform. 2018 cited by 231
- Cancer-associated fibroblast-derived Gremlin 1 promotes breast cancer progression
Authors: Jiang Ren, Marcel Smid, Josephine Iaria, Daniela Salvatori, Hans van Dam, Hong‐Jian Zhu, John W.M. Martens, Peter ten Dijke - Breast Cancer Research 2019 cited by 175
- Somatic mutations reveal asymmetric cellular dynamics in the early human embryo
Authors: Young Seok Ju, Iñigo Martincorena, Moritz Gerstung, Mia Petljak, Ludmil B. Alexandrov, Raheleh Rahbari, David C. Wedge, Helen Davies, Manasa Ramakrishna, Anthony Fullam, Sancha Martin, Christopher Alder, Nikita Patel, Steve Gamble, Sarah O’Meara, Dilip D. Giri, Torril Sauer, Sarah E. Pinder, Colin A. Purdie, Åke Borg, Henk G. Stunnenberg, Marc J. van de Vijver, Benita Kiat Tee Tan, Carlos Caldas, Andrew Tutt, Naoto T. Ueno, Laura van ‘t Veer, John W.M. Martens, Christos Sotiriou, Stian Knappskog, Paul N. Span, Sunil R. Lakhani, Jórunn E. Eyfjörd, Anne‐Lise Børresen‐Dale, Andrea L. Richardson, Alastair M. Thompson, Alain Viari, Matthew E. Hurles, Serena Nik‐Zainal, Peter J. Campbell, Michael R. Stratton - Nature 2017 cited by 309
- Deubiquitinase Activity Profiling Identifies UCHL1 as a Candidate Oncoprotein That Promotes TGFβ-Induced Breast Cancer Metastasis
Authors: Sijia Liu, Román González‐Prieto, Mengdi Zhang, Paul P. Geurink, Raymond Kooij, Prasanna Vasudevan Iyengar, Maarten van Dinther, Erik Bos, Xiaobing Zhang, Sylvia E. Le Dévédec, Bob van de Water, Roman I. Koning, Hong‐Jian Zhu, Wilma E. Mesker, Alfred C.O. Vertegaal, Huib Ovaa, Long Zhang, John W.M. Martens, Peter ten Dijke - Clinical Cancer Research 2019 cited by 173
- CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer
Authors: Hui Ling, Riccardo Spizzo, Yaser Atlasi, Milena S. Nicoloso, Masayoshi Shimizu, Roxana S. Redis, Naohiro Nishida, Roberta Gafà, Jian H. Song, Zhiyi Guo, Cristina Ivan, Elisa Barbarotto, Ingrid de Vries, Xinna Zhang, Manuela Ferracin, Mike Churchman, Janneke F. van Galen, Berna Beverloo, Maryam Shariati, Franziska Haderk, Marcos R. Estecio, Guillermo Garcia‐Manero, Gijs A. Patijn, D. C. Gotley, Vikas Bhardwaj, Imad Shureiqi, Subrata Sen, Asha S. Multani, James Welsh, Ken Yamamoto, Itsuki Taniguchi, Min‐Ae Song, Steven Gallinger, Graham Casey, Stephen N. Thibodeau, Loı̈c Le Marchand, Maarit Tiirikainen, Sendurai A. Mani, Wei Zhang, Ramana V. Davuluri, Koshi Mimori, Masaki Mori, Anieta M. Sieuwerts, John W.M. Martens, Ian Tomlinson, Massimo Negrini, Ioana Berindan‐Neagoe, John A. Foekens, Stanley R. Hamilton, Giovanni Lanza, Scott Kopetz, Riccardo Fodde, George A. Călin - Genome Research 2013 cited by 611
- A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence
Authors: Sander Canisius, John W.M. Martens, Lodewyk F.A. Wessels - Genome biology 2016 cited by 197
- DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery
Authors: Tiansheng Zhu, Yi Zhu, Yue Xuan, Huanhuan Gao, Xue Cai, Sander R. Piersma, Thang V. Pham, Tim Schelfhorst, Richard de Goeij-de Haas, Irene V. Bijnsdorp, Rui Sun, Liang Yue, Guan Ruan, Qiushi Zhang, Mo Hu, Yue Zhou, Winan J. van Houdt, Tessa Y. S. Le Large, Jacqueline Cloos, Anna Wojtuszkiewicz, Danijela Koppers‐Lalic, Franziska Böttger, Chantal Scheepbouwer, Ruud H. Brakenhoff, Geert J.L.H. van Leenders, Jan N.M. IJzermans, John W.M. Martens, Renske D.M. Steenbergen, Nicole C.T. van Grieken, Sathiyamoorthy Selvarajan, Sangeeta Mantoo, Sze Sing Lee, Serene Yeow, Syed Muhammad Fahmy Alkaff, Nan Xiang, Yaoting Sun, Xiao Yi, Shaozheng Dai, Wei Liu, Tian Lu, Zhicheng Wu, Xiao Liang, Man Wang, Yingkuan Shao, Xi Zheng, Kailun Xu, Yang Qin, Yifan Meng, Cong Lu, Jiang Zhu, Jine Zheng, Bo Wang, Sai Lou, Yibei Dai, Chao Xu, Chen-Huan Yu, Huazhong Ying, Tony Kiat Hon Lim, Jianmin Wu, Xiaofei Gao, Zhongzhi Luan, Xiaodong Teng, Peng Wu, Shiang Huang, Zhihua Tao, N. Gopalakrishna Iyer, Shuigeng Zhou, Wenguang Shao, Henry Lam, Ding Ma, Jiafu Ji, Oi Lian Kon, Shu Zheng, Ruedi Aebersold, Connie R. Jiménez, Tiannan Guo - Genomics Proteomics & Bioinformatics, Genom. Proteom. Bioinform. 2020 cited by 94
- Generating human prostate cancer organoids from leukapheresis enriched circulating tumour cells
Authors: Lisanne Mout, Lisanne F. van Dessel, Jaco Kraan, Anouk C. de Jong, Rui P. Neves, Sigrun Erkens‐Schulze, Corine M. Beaufort, Anieta M. Sieuwerts, Job van Riet, Thomas Woo, Ronald de Wit, Stefan Sleijfer, Paul Hamberg, Yorick Sandberg, Peter A.W. te Boekhorst, Harmen J.G. van de Werken, John W.M. Martens, Nikolas H. Stoecklein, Wytske M. van Weerden, Martijn P. Lolkema - European Journal of Cancer 2021 cited by 92
- The topography of mutational processes in breast cancer genomes
Authors: Sandro Morganella, Ludmil B. Alexandrov, Dominik Głodzik, Xueqing Zou, Helen Davies, Johan Staaf, Anieta M. Sieuwerts, Arie B. Brinkman, Sancha Martin, Manasa Ramakrishna, Adam P. Butler, Hyung-Yong Kim, Åke Borg, Christos Sotiriou, P. Andrew Futreal, Peter J. Campbell, Paul N. Span, Steven Van Laere, Sunil R. Lakhani, Jórunn E. Eyfjörd, Alastair M. Thompson, Hendrik G. Stunnenberg, Marc J. van de Vijver, John W.M. Martens, Anne‐Lise Børresen‐Dale, Andrea L. Richardson, Gu Kong, Gilles Thomas, Julian E. Sale, Cristina Rada, Michael R. Stratton, Ewan Birney, Serena Nik‐Zainal - Nature Communications 2016 cited by 283
- The DNA cytosine deaminase APOBEC3B promotes tamoxifen resistance in ER-positive breast cancer
Authors: Emily K. Law, Anieta M. Sieuwerts, Kelly LaPara, Brandon Leonard, Gabriel J. Starrett, Amy M. Molan, Nuri A. Temiz, Rachel I. Vogel, Marion E. Meijer‐van Gelder, Fred C.G.J. Sweep, Paul N. Span, John A. Foekens, John W.M. Martens, Douglas Yee, Reuben S. Harris - Science Advances 2016 cited by 240
