Niranjan Nagarajan

Active 2003–2026

113
Papers
25,265
Citations
60
h-index
102
i10-index

Citations

Citations per year for Niranjan Nagarajan1989: 1 citations1994: 2 citations1998: 1 citations1999: 1 citations2004: 2 citations2005: 8 citations2006: 15 citations2007: 15 citations2008: 19 citations2009: 43 citations2010: 47 citations2011: 82 citations2012: 122 citations2013: 159 citations2014: 223 citations2015: 227 citations2016: 240 citations2017: 323 citations2018: 352 citations2019: 1,075 citations2020: 1,207 citations2021: 1,386 citations2022: 1,144 citations2023: 896 citations2024: 1,294 citations2025: 636 citations2026: 47 citations1990–1993: no citations, so these years are not shown1995–1997: no citations, so these years are not shown2000–2003: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,531 citing papers, 22.1% of this breakdownChina: 2,273 citing papers, 14.2% of this breakdownUnited Kingdom: 988 citing papers, 6.2% of this breakdownGermany: 816 citing papers, 5.1% of this breakdownFrance: 536 citing papers, 3.3% of this breakdownAustralia: 508 citing papers, 3.2% of this breakdownCanada: 490 citing papers, 3% of this breakdownItaly: 428 citing papers, 2.7% of this breakdownSpain: 418 citing papers, 2.6% of this breakdownSingapore: 394 citing papers, 2.5% of this breakdownNetherlands: 381 citing papers, 2.4% of this breakdownJapan: 367 citing papers, 2.3% of this breakdown
0%22.1%Other 30.4%

Fields

  • Biochemistry, Genetics and Molecular Biology54.5%
  • Medicine22.4%
  • Agricultural and Biological Sciences9.2%
  • Environmental Science5%
  • Immunology and Microbiology2.6%
  • Computer Science2.2%
  • Other4.1%

Topics

  • Genomics and Phylogenetic Studies7.7%
  • Gut microbiota and health5.2%
  • Cancer Genomics and Diagnostics3.2%
  • Microbial Community Ecology and Physiology2%
  • RNA and protein synthesis mechanisms1.9%
  • Chromosomal and Genetic Variations1.9%
  • Other78.1%

Coauthors

All papers

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  1. Fast and accurate de novo genome assembly from long uncorrected reads

    Authors: , , , - Genome Research 2017 cited by 3,443

  2. Comprehensive Characterization of Cancer Driver Genes and Mutations

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Ekta Khurana, Peter J. Park, Eliezer M. Van Allen, Han Liang, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Sam Meier, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michael P. Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia and 670 more - Cell 2018 cited by 2,541

  3. LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

    Authors: , , , , , , , , , - Nucleic Acids Research 2012 cited by 1,537

  4. Critical Assessment of Metagenome Interpretation: the second round of challenges

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Huijue Jia, Tue Sparholt Jørgensen, Silas Kieser, Terje Klemetsen, Axel Kola, Mikhail Kolmogorov, Anton Korobeynikov, Jason C. Kwan, Nathan LaPierre, Claire Lemaitre, Chenhao Li, Antoine Limasset, Fábio Malcher Miranda, Serghei Mangul, Vanessa R. Marcelino, Camille Marchet, Pierre Marijon, Dmitry Meleshko, Daniel R. Mende, Alessio Milanese, Niranjan Nagarajan, Jakob Nybo Nissen, Sergey Nurk, Leonid Oliker, Lucas Paoli, Pierre Peterlongo, Vitor C. Piro, Jacob S. Porter, Simon Rasmussen, Evan Rees, Knut Reinert, Bernhard Y. Renard, Espen Mikal Robertsen, Gail Rosen, Hans‐Joachim Ruscheweyh, Varuni Sarwal, Nicola Segata, Enrico Seiler, Lizhen Shi, Fengzhu Sun, Shinichi Sunagawa, Søren J. Sørensen, Ashleigh Thomas, Chengxuan Tong, Mirko Trajkovski, Julien Tremblay, Gherman Uritskiy, Riccardo Vicedomini, Zhengyang Wang, Ziye Wang, Zhong Wang, Andrew Warren, Nils Peder Willassen, Katherine Yelick, Ronghui You, Georg Zeller, Zhengqiao Zhao, Shanfeng Zhu, Jie Zhu, Rubén Garrido‐Oter, Petra Gastmeier, Stéphane Hacquard, Susanne Häußler, Ariane Khaledi, Friederike Maechler, Fantin Mesny, Simona Radutoiu, Paul Schulze‐Lefert, Nathiana Smit, Till Strowig and 3 more - Nature Methods 2022 cited by 396

  5. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Zhong Wang, Robert W. Egan, Dongwan Kang, Jeffrey Cook, Charles Deltel, Michael Beckstette, Claire Lemaitre, Pierre Peterlongo, Guillaume Rizk, Dominique Lavenier, Yu‐Wei Wu, Steven W. Singer, Chirag Jain, Marc Strous, Heiner Klingenberg, Peter Meinicke, Michael D. Barton, Thomas Lingner, Hsin-Hung Lin, Yu-Chieh Liao, Genivaldo Gueiros Z. Silva, Daniel Cuevas, Robert A. Edwards, Surya Saha, Vitor C. Piro, Bernhard Y. Renard, Mihai Pop, Hans‐Peter Klenk, Markus Göker, Nikos C. Kyrpides, Tanja Woyke, Julia A. Vorholt, Paul Schulze‐Lefert, Edward M. Rubin, Aaron E. Darling, Thomas Rattei, Alice C. McHardy - Nature Methods 2017 cited by 948

  6. Metagenomics-enabled microbial surveillance

    Authors: , , - Nature Microbiology 2022 cited by 273

  7. A global metagenomic map of urban microbiomes and antimicrobial resistance

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Malay Bhattacharyya, Ran Blekhman, Eduardo Castro‐Nallar, A Cañas, Aspassia D. Chatziefthimiou, Robert W. Crawford, Francesca De Filippis, Youping Deng, Christelle Desnues, Emmanuel Dias‐Neto, Marius Dybwad, Eran Elhaik, Danilo Ercolini, Alina Frolova, Dennis Gankin, Jonathan S. Gootenberg, Alexandra B. Graf, David C. Green, Iman Hajirasouliha, Jaden J. A. Hastings, Mark Hernandez, Gregorio Iraola, Soojin Jang, André Kahles, Frank J. Kelly, Kaymisha Knights, Nikos C. Kyrpides, Paweł P. Łabaj, Patrick K. H. Lee, Marcus H. Y. Leung, Per O. Ljungdahl, Gabriella Mason-Buck, Ken McGrath, Cem Meydan, Emmanuel F. Mongodin, Milton Ozório Moraes, Niranjan Nagarajan, Marina Nieto‐Caballero, Houtan Noushmehr, Manuela Oliveira, Stephan Ossowski, Olayinka Osuolale, Orhan Özcan, David Páez-Espino, Nicolás Rascovan, Hugues Richard, Gunnar Rätsch, Lynn M. Schriml, Torsten Semmler, Osman Uğur Sezerman, Leming Shi, Tieliu Shi, Rania Siam, Le Huu Song, Haruo Suzuki, Denise Syndercombe Court, Scott Tighe, Xinzhao Tong, Klas I. Udekwu, Juan A. Ugalde, Brandon Valentine, Dimitar Vassilev, Elena Vayndorf, Thirumalaisamy P. Velavan, Jun Wu, María Mercedes Zambrano, Jifeng Zhu, Sibo Zhu, Christopher E. Mason, Natasha Abdullah and 579 more - Cell 2021 cited by 398

  8. Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes

    Authors: , , , , , , , , , , , , , , , , - Nature Biotechnology 2019 cited by 433

  9. The draft genome of sweet orange (Citrus sinensis)

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Oscar Junhong Luo, Zhonghui Tang, Wen-Wu Guo, Hanhui Kuang, Hong Yu Zhang, Mikeal L. Roose, Niranjan Nagarajan, Xiuxin Deng, Yijun Ruan - Nature Genetics 2012 cited by 1,052

  10. Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , llya Shmulevich, Alexander J. Lazar, David A. Wheeler, Gad Getz, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Sam Meier, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michaël Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia and 659 more - Cell 2018 cited by 446

  11. Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

    Authors: , , - PLoS Computational Biology, PLoS Comput. Biol. 2009 cited by 1,646

  12. Comprehensive Characterization of Cancer Driver Genes and Mutations

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Ekta Khurana, Peter J. Park, Eliezer M. Van Allen, Han Liang, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Sam Meier, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael I. Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michaël Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia and 670 more - Cell 2018 cited by 600

  13. No evidence for a common blood microbiome based on a population study of 9,770 healthy humans

    Authors: , , , , , , - Nature Microbiology 2023 cited by 159

  14. Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare

    Authors: , , , , , , , , , , , , , , , , , , , , , - Nature Microbiology 2016 cited by 406

  15. Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut

    Authors: , , , , , , , , , , , , , , , , - Nature Ecology & Evolution 2020 cited by 179

  16. In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

    Authors: , , , , , , , , , , , , , , - Molecular Cell 2016 cited by 375

  17. Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Beth Mutai, Russell Y. Neches, Amanda Hui Qi Ng, Marina Nieto‐Caballero, Olga Nikolayeva, Tatyana Nikolayeva, Eileen Png, Jorge L. Sánchez, Heba Shaaban, Maria A. Sierra, Xinzhao Tong, Ben Young, Josue Alicea, Malay Bhattacharyya, Ran Blekhman, Eduardo Castro‐Nallar, A Cañas, Aspassia D. Chatziefthimiou, Robert W. Crawford, Youping Deng, Christelle Desnues, Emmanuel Dias‐Neto, Daisy Donnellan, Marius Dybwad, Eran Elhaik, Danilo Ercolini, Alina Frolova, Alexandra B. Graf, David C. Green, Iman Hajirasouliha, Mark Hernandez, Gregorio Iraola, Soojin Jang, Angela Jones, Frank J. Kelly, Kaymisha Knights, Paweł P. Łabaj, Patrick K. H. Lee, Levy Shawn, Per O. Ljungdahl, Abigail Lyons, Gabriella Mason-Buck, Ken McGrath, Emmanuel F. Mongodin, Milton Ozório Moraes, Niranjan Nagarajan, Houtan Noushmehr, Manuela Oliveira, Stephan Ossowski, Olayinka Osuolale, Orhan Özcan, David Páez-Espino, Nicolás Rascovan, Hugues Richard, Gunnar Rätsch, Lynn M. Schriml, Torsten Semmler, Osman Uğur Sezerman, Leming Shi, Le Huu Song, Haruo Suzuki, Denise Syndercombe Court, Dominique Thomas, Scott Tighe, Klas I. Udekwu, Juan A. Ugalde, Brandon Valentine, Dimitar Vassilev, Elena Vayndorf, Thirumalaisamy P. Velavan and 10 more - Nature Medicine 2020 cited by 256

  18. Detection and characterisation of a sixth Candida auris clade in Singapore: a genomic and phenotypic study

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , - The Lancet Microbe 2024 cited by 136

  19. A Randomized, Double-Blind Placebo Controlled Trial of Balapiravir, a Polymerase Inhibitor, in Adult Dengue Patients

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , - The Journal of Infectious Diseases 2012 cited by 289

  20. Predicting Cancer Drug Response using a Recommender System

    Authors: , , - Bioinformatics, Bioinform. 2018 cited by 154

  21. Gut microbiota changes in children with autism spectrum disorder: a systematic review

    Authors: , , , , , , , , - Gut Pathogens 2020 cited by 144

  22. Determination of isoform-specific RNA structure with nanopore long reads

    Authors: , , , , , , , , , , , , , - Nature Biotechnology 2020 cited by 119

  23. Fast and sensitive mapping of nanopore sequencing reads with GraphMap

    Authors: , , , , , - Nature Communications 2016 cited by 430

  24. Immunological corollary of the pulmonary mycobiome in bronchiectasis: the CAMEB study

    Authors: , , , , , , , , , , , , , , , , , , , , , , , - European Respiratory Journal 2018 cited by 149