Stefan Janssen

Active 1989–2025

58
Papers
42,335
Citations
31
h-index
52
i10-index

Citations

Citations per year for Stefan Janssen1976: 1 citations1990: 3 citations1991: 2 citations1992: 2 citations1993: 2 citations1995: 1 citations1996: 1 citations1997: 1 citations1998: 3 citations1999: 1 citations2000: 1 citations2001: 3 citations2002: 1 citations2003: 2 citations2004: 8 citations2005: 3 citations2006: 7 citations2007: 6 citations2008: 4 citations2009: 6 citations2010: 13 citations2011: 19 citations2012: 15 citations2013: 15 citations2014: 25 citations2015: 12 citations2016: 15 citations2017: 114 citations2018: 225 citations2019: 854 citations2020: 1,765 citations2021: 2,602 citations2022: 2,381 citations2023: 1,829 citations2024: 2,666 citations2025: 1,167 citations2026: 39 citations1977–1989: no citations, so these years are not shown1994: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 4,465 citing papers, 21.8% of this breakdownChina: 3,269 citing papers, 16% of this breakdownGermany: 1,076 citing papers, 5.3% of this breakdownUnited Kingdom: 926 citing papers, 4.5% of this breakdownItaly: 742 citing papers, 3.6% of this breakdownCanada: 732 citing papers, 3.6% of this breakdownAustralia: 641 citing papers, 3.1% of this breakdownFrance: 589 citing papers, 2.9% of this breakdownSpain: 560 citing papers, 2.7% of this breakdownJapan: 510 citing papers, 2.5% of this breakdownNetherlands: 458 citing papers, 2.2% of this breakdownSouth Korea: 406 citing papers, 2% of this breakdown
0%21.8%Other 29.8%

Fields

  • Biochemistry, Genetics and Molecular Biology44.2%
  • Medicine21.8%
  • Environmental Science11.4%
  • Agricultural and Biological Sciences8.6%
  • Immunology and Microbiology5%
  • Neuroscience2.5%
  • Other6.5%

Topics

  • Gut microbiota and health17%
  • Microbial Community Ecology and Physiology4.1%
  • Genomics and Phylogenetic Studies3.2%
  • Diet and metabolism studies2.7%
  • Clostridium difficile and Clostridium perfringens research2.6%
  • Probiotics and Fermented Foods2.3%
  • Other68.1%

Coauthors

All papers

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  1. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Julia M. Gauglitz, Sean M. Gibbons, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters and 12 more - Nature Biotechnology 2019 cited by 24,006

  2. Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease

    Authors: , , , , , , , , , , , , , , , , - Cell 2016 cited by 3,648

  3. A communal catalogue reveals Earth’s multiscale microbial diversity

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Donna Berg-Lyons, Valerie J. McKenzie, Noah Fierer, Jed A. Fuhrman, Aaron Clauset, Rick Stevens, Ashley Shade, Katherine S. Pollard, Kelly D. Goodwin, Janet Jansson, Jack A. Gilbert, Rob Knight, Jose L. Agosto Rivera, Lisa Al-Moosawi, John C. Alverdy, Katherine R. Amato, Jason Andras, Largus T. Angenent, Dionysios A. Antonopoulos, Amy Apprill, David Armitage, Kate A. Ballantine, Jiří Bárta, Julia K. Baum, Allison Berry, Ashish Bhatnagar, Monica Bhatnagar, Jennifer F. Biddle, Lucie Bittner, Bazartseren Boldgiv, Eric Bottos, Donal M. Boyer, Josephine Braun, William J. Brazelton, Francis Q. Brearley, Alexandra H. Campbell, J. Gregory Caporaso, César Cardona, JoLynn Carroll, S. Craig Cary, Brenda B. Casper, Trevor C. Charles, Haiyan Chu, Danielle C. Claar, Robert G. Clark, Jonathan B. Clayton, José C. Clemente, Alyssa T. Cochran, Maureen L. Coleman, Gavin Collins, Rita R. Colwell, Mónica Contreras, Benjamin B. Crary, Simon Creer, Daniel A. Cristol, Byron C. Crump, Duoying Cui, Sarah E. Daly, Liliana M. Dávalos, Russell D. Dawson, Jennifer R. DeFazio, Frédéric Delsuc, Hebe M. Dionisi, Maria Gloria Domínguez-Bello, Robin D. Dowell, Eric A. Dubinsky, Peter O. Dunn, Danilo Ercolini, Robert E. Espinoza, Vanessa O. Ezenwa and 203 more - Nature 2017 cited by 2,950

  4. Microbiome analyses of blood and tissues suggest cancer diagnostic approach

    Authors: , , , , , , , , , , , , , , , , - Nature, Nat. 2020 cited by 1,056

  5. Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Andreas C. Hocke, Holger Müller-Redetzky, Kathrin Heim, Felix Machleidt, Alexander Uhrig, Laure Bosquillon de Jarcy, Linda Jürgens, Miriam Stegemann, Christoph R. Glösenkamp, Hans‐Dieter Volk, Christine Goffinet, Markus Landthaler, Emanuel Wyler, Philipp Georg, Maria Schneider, Chantip Dang‐Heine, Nick Neuwinger, Kai Kappert, R Tauber, Victor M. Corman, Jan Raabe, Kim M Kaiser, M To Vinh, Gereon Rieke, Christian Meisel, Thomas Ulas, Matthias Becker, Robert Geffers, Martin Witzenrath, Christian Drosten, Norbert Suttorp, Christof von Kalle, Florian Kurth, Kristian Händler, Joachim L. Schultze, Anna C. Aschenbrenner, Yang Li, Jacob Nattermann, Birgit Sawitzki, Antoine‐Emmanuel Saliba, Leif Erik Sander, Angel Angelov, Robert Bals, Alexander Bartholomäus, Anke Becker, Daniela Bezdan, Ezio Bonifacio, Peer Bork, Thomas Clavel, Maria Colomé‐Tatché, Andreas Diefenbach, Alexander Dilthey, Nicole Fischer, Konrad U. Förstner, Julia-Stefanie Frick, Julien Gagneur, Alexander Goesmann, Torsten Hain, Michael Hummel, Stefan Janssen, Jörn Kalinowski, René Kallies, Birte Kehr, Andreas Keller, Sarah Kim-Hellmuth, Christoph Klein, Oliver Kohlbacher, Jan O. Korbel, Ingo Kurth, Markus Landthaler and 40 more - Cell 2020 cited by 1,628

  6. American Gut: an Open Platform for Citizen Science Microbiome Research

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, José A. Navas-Molina, Tanya T. Nguyen, Shyamal D. Peddada, Pavel A. Pevzner, Katherine S. Pollard, Ali Rahnavard, Adam Robbins‐Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke Thompson, Anupriya Tripathi, Yoshiki Vázquez‐Baeza, Alison Vrbanac, Paul E. Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight, Allison E. Mann, Amnon Amir, Angel Frazier, Cameron Martino, Carlito B. Lebrilla, Catherine Lozupone, Cecil M. Lewis, Charles L. Raison, Chi Zhang, Christian L. Lauber, Christina Warinner, Christopher A. Lowry, Chris Callewaert, Cinnamon S. Bloss, Dana Willner, Daniela Domingos Galzerani, David J. Gonzalez, David A. Mills, Deepak Chopra, Dirk Gevers, Donna Berg-Lyons, Dorothy D. Sears, Doug Wendel, Elijah Lovelace, Emily C. Pierce, Emily TerAvest, Evan Bolyen, Frederic D. Bushman, Gary D. Wu, George M. Church, Gordon Saxe, Hanna D. Holscher, Ivo Ugrina, J German, J. Gregory Caporaso, Jacob M. Wozniak, Jacqueline Kerr, Jacques Ravel, James D. Lewis, Jan S. Suchodolski, Janet Jansson, Jarrad Hampton‐Marcell and 68 more - mSystems 2018 cited by 906

  7. Qiita: rapid, web-enabled microbiome meta-analysis

    Authors: , , , , , , , , , , , , , , , , , , , , , , - Nature Methods 2018 cited by 705

  8. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Julia M. Gauglitz, Sean M. Gibbons, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters and 12 more - Nature Biotechnology 2019 cited by 874

  9. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Zhong Wang, Robert W. Egan, Dongwan Kang, Jeffrey Cook, Charles Deltel, Michael Beckstette, Claire Lemaitre, Pierre Peterlongo, Guillaume Rizk, Dominique Lavenier, Yu‐Wei Wu, Steven W. Singer, Chirag Jain, Marc Strous, Heiner Klingenberg, Peter Meinicke, Michael D. Barton, Thomas Lingner, Hsin-Hung Lin, Yu-Chieh Liao, Genivaldo Gueiros Z. Silva, Daniel Cuevas, Robert A. Edwards, Surya Saha, Vitor C. Piro, Bernhard Y. Renard, Mihai Pop, Hans‐Peter Klenk, Markus Göker, Nikos C. Kyrpides, Tanja Woyke, Julia A. Vorholt, Paul Schulze‐Lefert, Edward M. Rubin, Aaron E. Darling, Thomas Rattei, Alice C. McHardy - Nature Methods 2017 cited by 948

  10. A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice

    Authors: , , , , , , , , , , , , , , , - eLife 2020 cited by 410

  11. Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , - Nature Communications 2019 cited by 413

  12. Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Eicke Latz, Kevin Hrusovsky, Andrew J. Ball, Joe M. Johnson, Paul-Albert Koenig, Florian I. Schmidt, Muzlifah Haniffa, James R. Heath, Beate M. Kümmerer, Verena Keitel, Björn Jensen, Paula Stubbemann, Florian Kurth, Leif Erik Sander, Birgit Sawitzki, Janine Altmüller, Angel Angelov, Anna C. Aschenbrenner, Robert Bals, Alexander Bartholomäus, Anke Becker, Matthias Becker, Daniela Bezdan, Michael Bitzer, Conny Blumert, Ezio Bonifacio, Peer Bork, Boyke Bunk, Helmut Blum, Nicolas Casadei, Thomas Clavel, Maria Colomé‐Tatché, Markus Cornberg, Inti Alberto De La Rosa Velázquez, Andreas Diefenbach, Alexander Dilthey, Nicole Fischer, Konrad U. Förstner, Sören Franzenburg, Julia-Stefanie Frick, Gisela Gabernet, Julien Gagneur, Tina Ganzenmueller, Marie Gauder, Janina Geißert, Alexander Goesmann, Siri Göpel, Adam Grundhoff, Hajo Grundmann, Torsten Hain, Frank Hanses, Ute Hehr, André Heimbach, Marius M. Hoeper, Friedemann Horn, Daniel Hübschmann, Michael Hummel, Thomas Iftner, Angelika Iftner, Thomas Illig, Stefan Janssen, Jörn Kalinowski, René Kallies, Birte Kehr, Andreas Keller, Oliver T. Keppler, Sarah Kim-Hellmuth, Christoph Klein, Michael Knop, Oliver Kohlbacher and 63 more - Immunity 2021 cited by 257

  13. Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

    Authors: , , , , , , , , , , , - mSystems 2018 cited by 591

  14. Sequence-structure-function relationships in the microbial protein universe

    Authors: , , , , , , , , , , , , , , , - Nature Communications 2023 cited by 102

  15. Robustness of cancer microbiome signals over a broad range of methodological variation

    Authors: , , , , , , , , , , , , , , , , , , , , - Oncogene 2024 cited by 62

  16. Vitamin D metabolites and the gut microbiome in older men

    Authors: , , , , , , , , , , , - Nature Communications 2020 cited by 180

  17. The impact of skin care products on skin chemistry and microbiome dynamics

    Authors: , , , , , , , , , , , , , , , , , , , - BMC Biology 2019 cited by 248

  18. QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters, Yunhu Wan, Mingxun Wang and 9 more - 2018 cited by 883

  19. Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month

    Authors: , , , , , , , , , , - Microbiome 2019 cited by 174

  20. An intact gut microbiome protects genetically predisposed mice against leukemia

    Authors: , , , , , , , , , , , , , , , , , , , , , , - Blood 2020 cited by 106

  21. Assessing taxonomic metagenome profilers with OPAL

    Authors: , , , , , - Genome biology 2019 cited by 101

  22. KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples

    Authors: , , , , , , , , , , , , , - mSystems 2018 cited by 159

  23. QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Authors: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters, Yunhu Wan, Mingxun Wang and 10 more - 2018 cited by 584

  24. The RNA shapes studio

    Authors: , - Bioinformatics, Bioinform. 2014 cited by 152