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Tommi Vatanen

Active 2010–2025

64
Papers
18,100
Citations
40
h-index
57
i10-index

Citations

Citations per year for Tommi Vatanen1974: 1 citations1976: 3 citations1992: 1 citations2000: 2 citations2001: 2 citations2009: 1 citations2010: 1 citations2011: 1 citations2012: 6 citations2013: 9 citations2014: 12 citations2015: 30 citations2016: 119 citations2017: 308 citations2018: 282 citations2019: 883 citations2020: 1,128 citations2021: 1,203 citations2022: 1,189 citations2023: 926 citations2024: 1,448 citations2025: 833 citations2026: 48 citations1975: no citations, so this year is not shown1977–1991: no citations, so these years are not shown1993–1999: no citations, so these years are not shown2002–2008: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,358 citing papers, 21.1% of this breakdownChina: 1,795 citing papers, 16% of this breakdownUnited Kingdom: 592 citing papers, 5.3% of this breakdownGermany: 491 citing papers, 4.4% of this breakdownItaly: 440 citing papers, 3.9% of this breakdownNetherlands: 420 citing papers, 3.8% of this breakdownCanada: 381 citing papers, 3.4% of this breakdownAustralia: 341 citing papers, 3.1% of this breakdownSpain: 318 citing papers, 2.8% of this breakdownFrance: 314 citing papers, 2.8% of this breakdownSweden: 237 citing papers, 2.1% of this breakdownFinland: 225 citing papers, 2% of this breakdown
0%21.1%Other 29.3%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology61.5%
  • Medicine19.3%
  • Nursing4.1%
  • Environmental Science3.4%
  • Agricultural and Biological Sciences2.7%
  • Immunology and Microbiology2.4%
  • Other6.6%

Topics

  • Gut microbiota and health23.4%
  • Clostridium difficile and Clostridium perfringens research6.5%
  • Diet and metabolism studies4.5%
  • Probiotics and Fermented Foods3.5%
  • Gastrointestinal motility and disorders2.7%
  • Inflammatory Bowel Disease2.5%
  • Other56.9%

Coauthors

All papers

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  1. Gut microbiome structure and metabolic activity in inflammatory bowel disease

    Authors: Eric A. Franzosa, Alexandra Sirota‐Madi, Julián Ávila-Pacheco, Nadine Fornelos, Henry J. Haiser, Stefan Reinker, Tommi Vatanen, A. Brantley Hall, Himel Mallick, Lauren J. McIver, Jenny Sauk, Robin Wilson, Betsy W. Stevens, Justin Scott, Kerry A. Pierce, Amy Deik, Kevin Bullock, Floris Imhann, Jeffrey A. Porter, Alexandra Zhernakova, Jingyuan Fu, Rinse K. Weersma, Cisca Wijmenga, Clary B. Clish, Hera Vlamakis, Curtis Huttenhower, Ramnik J. Xavier - Nature Microbiology 2018 cited by 2,011

  2. Temporal development of the gut microbiome in early childhood from the TEDDY study

    Authors: Christopher J. Stewart, Nadim J. Ajami, Jacqueline O’Brien, Diane S. Hutchinson, Daniel P. Smith, Matthew C. Wong, Matthew C. Ross, Richard E. Lloyd, HarshaVardhan Doddapaneni, Ginger Metcalf, Donna M. Muzny, Richard A. Gibbs, Tommi Vatanen, Curtis Huttenhower, Ramnik J. Xavier, Marian Rewers, William Hagopian, Jorma Toppari, Anette‐G. Ziegler, Jin‐Xiong She, Beena Akolkar, Åke Lernmark, Heikki Hyöty, Kendra Vehik, Jeffrey P. Krischer, Joseph F. Petrosino - Nature 2018 cited by 2,116

  3. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

    Authors: Alexandra Zhernakova, Alexander Kurilshikov, Marc Jan Bonder, Ettje F. Tigchelaar, Melanie Schirmer, Tommi Vatanen, Zlatan Mujagic, Arnau Vich Vila, Gwen Falony, Sara Vieira‐Silva, Jun Wang, Floris Imhann, Eelke Brandsma, Soesma A. Jankipersadsing, Marie Joossens, María Carmen Cénit, Patrick Deelen, Morris A. Swertz, LifeLines cohort study, Rinse K. Weersma, Edith J. M. Feskens, Mihai G. Netea, Dirk Gevers, Daisy Jonkers, Lude Franke, Yurii S. Aulchenko, Curtis Huttenhower, Jeroen Raes, Marten H. Hofker, Ramnik J. Xavier, Cisca Wijmenga, Jingyuan Fu - Science 2016 cited by 1,996

  4. A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

    Authors: A. Brantley Hall, Moran Yassour, Jenny Sauk, Ashley Garner, Xiaofang Jiang, Timothy D. Arthur, Georgia Lagoudas, Tommi Vatanen, Nadine Fornelos, Robin Wilson, Madeline Bertha, Melissa Cohen, John J. Garber, Hamed Khalili, Dirk Gevers, Ashwin N. Ananthakrishnan, Subra Kugathasan, Eric S. Lander, Paul C. Blainey, Hera Vlamakis, Ramnik J. Xavier, Curtis Huttenhower - Genome Medicine 2017 cited by 783

  5. Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

    Authors: Tommi Vatanen, Aleksandar D. Kostic, Eva d’Hennezel, Heli Siljander, Eric A. Franzosa, Moran Yassour, Raivo Kolde, Hera Vlamakis, Timothy D. Arthur, Anu-Maaria Hämäläinen, Aleksandr Peet, Vallo Tillmann, Raivo Uibo, Sergei Mokurov, Н В Доршакова, Jorma Ilonen, Suvi Μ. Virtanen, Susanne J. Szabo, Jeffrey A. Porter, Harri Lähdesmäki, Curtis Huttenhower, Dirk Gevers, Thomas W. Cullen, Mikael Knip, Ramnik J. Xavier - Cell 2016 cited by 1,326

  6. Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

    Authors: Moran Yassour, Tommi Vatanen, Heli Siljander, Anu‐Maaria Hämäläinen, Taina Härkönen, Samppa Ryhänen, Eric A. Franzosa, Hera Vlamakis, Curtis Huttenhower, Dirk Gevers, Eric S. Lander, Mikael Knip, on behalf of the DIABIMMUNE Study Group, Ramnik J. Xavier - Science Translational Medicine 2016 cited by 1,068

  7. The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

    Authors: Tommi Vatanen, Eric A. Franzosa, Randall Schwager, Surya Tripathi, Timothy D. Arthur, Kendra Vehik, Åke Lernmark, William Hagopian, Marian Rewers, Jin‐Xiong She, Jorma Toppari, Anette‐G. Ziegler, Beena Akolkar, Jeffrey P. Krischer, Christopher J. Stewart, Nadim J. Ajami, Joseph F. Petrosino, Dirk Gevers, Harri Lähdesmäki, Hera Vlamakis, Curtis Huttenhower, Ramnik J. Xavier - Nature 2018 cited by 919

  8. The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

    Authors: Aleksandar D. Kostic, Dirk Gevers, Heli Siljander, Tommi Vatanen, Tuulia Hyötyläinen, Anu‐Maaria Hämäläinen, Aleksandr Peet, Vallo Tillmann, Päivi Pöhö, Ismo Mattila, Harri Lähdesmäki, Eric A. Franzosa, Outi Vaarala, Marcus C. de Goffau, Hermie J. M. Harmsen, Jorma Ilonen, Suvi Μ. Virtanen, Clary B. Clish, Matej Orešič, Curtis Huttenhower, Mikael Knip, Ramnik J. Xavier - Cell Host & Microbe 2015 cited by 1,207

  9. Elevated rates of horizontal gene transfer in the industrialized human microbiome

    Authors: Mathieu Groussin, Mathilde Poyet, Ainara Sistiaga, Sean M. Kearney, Katya Moniz, Mary Noel, Jeff Hooker, Sean M. Gibbons, Laure Ségurel, Alain Froment, Rihlat Saïd-Mohamed, Alain Fezeu, Vanessa A. Juimo, Sophie Lafosse, Francis Ekwin Tabe, Catherine Girard, Deborah Iqaluk, Le Thanh Tu Nguyen, B. Jesse Shapiro, Jenni Lehtimäki, Lasse Ruokolainen, Pinja Kettunen, Tommi Vatanen, Shani Sigwazi, Audax Mabulla, Manuel Domínguez‐Rodrigo, Yvonne Ayerki Nartey, Adwoa Agyei‐Nkansah, Amoako Duah, Yaw Asante Awuku, Kenneth Valles, Shadrack Osei Asibey, Mary Afihene, Lewis R. Roberts, Amelie Plymoth, Charles Onyekwere, Roger E. Summons, Ramnik J. Xavier, Eric J. Alm - Cell 2021 cited by 369

  10. The effect of host genetics on the gut microbiome

    Authors: Marc Jan Bonder, Alexander Kurilshikov, Ettje F. Tigchelaar, Zlatan Mujagic, Floris Imhann, Arnau Vich Vila, Patrick Deelen, Tommi Vatanen, Melanie Schirmer, Sanne P. Smeekens, Daria V. Zhernakova, Soesma A. Jankipersadsing, Martin Jaeger, Marije Oosting, María Carmen Cénit, Ad Masclee, Morris A. Swertz, Yang Li, Vinod Kumar, Leo A. B. Joosten, Hermie J. M. Harmsen, Rinse K. Weersma, Lude Franke, Marten H. Hofker, Ramnik J. Xavier, Daisy Jonkers, Mihai G. Netea, Cisca Wijmenga, Jingyuan Fu, Alexandra Zhernakova - Nature Genetics 2016 cited by 868

  11. Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism

    Authors: Tommi Vatanen, Karolina S. Jabbar, Terhi Ruohtula, Jarno Honkanen, Julián Ávila-Pacheco, Heli Siljander, Martin Stražar, Sami Oikarinen, Heikki Hyöty, Jorma Ilonen, Caroline M. Mitchell, Moran Yassour, Suvi Μ. Virtanen, Clary B. Clish, Damian R. Plichta, Hera Vlamakis, Mikael Knip, Ramnik J. Xavier - Cell 2022 cited by 180

  12. The Super-Donor Phenomenon in Fecal Microbiota Transplantation

    Authors: Brooke C. Wilson, Tommi Vatanen, Wayne S. Cutfield, Justin M. O’Sullivan - Frontiers in Cellular and Infection Microbiology 2019 cited by 414

  13. Strain-specific impacts of probiotics are a significant driver of gut microbiome development in very preterm infants

    Authors: Lauren C. Beck, A Masi, Gregory R. Young, Tommi Vatanen, Christopher A Lamb, Rachel Smith, Jonathan Coxhead, Alana Butler, Benjamin J. Marsland, Nicholas D. Embleton, Janet Berrington, Christopher J. Stewart - Nature Microbiology 2022 cited by 165

  14. Effects of Fecal Microbiome Transfer in Adolescents With Obesity

    Authors: Karen S. W. Leong, Thilini N. Jayasinghe, Brooke C. Wilson, José G. B. Derraik, Benjamin B. Albert, Valentina Chiavaroli, Darren Svirskis, Kathryn L. Beck, Cathryn A. Conlon, Yannan Jiang, William Schierding, Tommi Vatanen, David J. Holland, Justin M. O’Sullivan, Wayne S. Cutfield - JAMA Network Open 2020 cited by 171

  15. Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan

    Authors: Joachim Johansen, Koji Atarashi, Yasumichi Arai, Nobuyoshi Hirose, Søren J. Sørensen, Tommi Vatanen, Mikael Knip, Kenya Honda, Ramnik J. Xavier, Simon Rasmussen, Damian R. Plichta - Nature Microbiology 2023 cited by 104

  16. Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life

    Authors: Tommi Vatanen, Damian R. Plichta, Juhi Somani, Philipp C. Münch, Timothy D. Arthur, A. Brantley Hall, Sabine Rudolf, Edward J. Oakeley, Xiaobo Ke, Rachel Young, Henry J. Haiser, Raivo Kolde, Moran Yassour, Kristiina Luopajärvi, Heli Siljander, Suvi Μ. Virtanen, Jorma Ilonen, Raivo Uibo, Vallo Tillmann, Sergei Mokurov, Н В Доршакова, Jeffrey A. Porter, Alice C. McHardy, Harri Lähdesmäki, Hera Vlamakis, Curtis Huttenhower, Mikael Knip, Ramnik J. Xavier - Nature Microbiology 2018 cited by 246

  17. A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaning

    Authors: Tommi Vatanen, Qi Yan Ang, Léa Siegwald, Shafiqul Alam Sarker, Caroline I. Le Roy, Stéphane Duboux, Omar Delannoy-Bruno, Catherine Ngom‐Bru, Claire L. Boulangé, Martin Stražar, Julián Ávila-Pacheco, Amy Deik, Kerry A. Pierce, Kevin Bullock, Courtney Dennis, Shamima Sultana, Sharika Sayed, Mahbubar Rahman, Tahmeed Ahmed, Monica Modesto, Paola Mattarelli, Clary B. Clish, Hera Vlamakis, Damian R. Plichta, Olga Sakwińska, Ramnik J. Xavier - Cell 2022 cited by 99

  18. Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

    Authors: Kelly Shaw, Madeline Bertha, Tatyana Hofmekler, Pankaj Chopra, Tommi Vatanen, Abhiram Srivatsa, Jarod Prince, Archana Kumar, Cary G. Sauer, Michael E. Zwick, Glen A. Satten, Aleksandar D. Kostic, Jennifer G. Mullé, Ramnik J. Xavier, Subra Kugathasan - Genome Medicine 2016 cited by 284

  19. Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

    Authors: Guoyan Zhao, Tommi Vatanen, Lindsay Droit, Arnold Park, Aleksandar D. Kostic, Tiffany Poon, Hera Vlamakis, Heli Siljander, Taina Härkönen, Anu-Maaria Hämäläinen, Aleksandr Peet, Vallo Tillmann, Jorma Ilonen, David Wang, Mikael Knip, Ramnik J. Xavier, Herbert W. Virgin - National Academy of Sciences, Proceedings of the National Academy of Sciences 2017 cited by 300

  20. Sequence-structure-function relationships in the microbial protein universe

    Authors: Julia Koehler Leman, Paweł Szczerbiak, P. Douglas Renfrew, Vladimir Gligorijević, Daniel Berenberg, Tommi Vatanen, Bryn C. Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, I. Fisk, Ramnik J. Xavier, Rob Knight, Richard Bonneau, Tomasz Kościółek - Nature Communications 2023 cited by 102

  21. The influence of a short-term gluten-free diet on the human gut microbiome

    Authors: Marc Jan Bonder, Ettje F. Tigchelaar, Xianghang Cai, Gosia Trynka, María Carmen Cénit, Barbara Hrdličková, Huanzi Zhong, Tommi Vatanen, Dirk Gevers, Cisca Wijmenga, Yang Wang, Alexandra Zhernakova - Genome Medicine 2016 cited by 286

  22. A gut microbial peptide and molecular mimicry in the pathogenesis of type 1 diabetes

    Authors: Khyati Girdhar, Qian Huang, I‐Ting Chow, Tommi Vatanen, Claudia Brady, Amol Raisingani, Patrick Autissier, Mark A. Atkinson, William W. Kwok, C. Ronald Kahn, Emrah Altındiş - National Academy of Sciences, Proceedings of the National Academy of Sciences 2022 cited by 89

  23. Strain engraftment competition and functional augmentation in a multi-donor fecal microbiota transplantation trial for obesity

    Authors: Brooke C. Wilson, Tommi Vatanen, Thilini N. Jayasinghe, Karen S. W. Leong, José G. B. Derraik, Benjamin B. Albert, Valentina Chiavaroli, Darren Svirskis, Kathryn L. Beck, Cathryn A. Conlon, Yannan Jiang, William Schierding, David J. Holland, Wayne S. Cutfield, Justin M. O’Sullivan - Microbiome 2021 cited by 106

  24. Phages in the Gut Ecosystem

    Authors: Michele Zuppi, Heather Hendrickson, Justin M. O’Sullivan, Tommi Vatanen - Frontiers in Cellular and Infection Microbiology 2022 cited by 100