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Paul Stothard

Active 1964–2024

78
Papers
23,727
Citations
48
h-index
74
i10-index

Citations

Citations per year for Paul Stothard1964: 3 citations1979: 1 citations1990: 1 citations1994: 1 citations2000: 1 citations2001: 2 citations2003: 1 citations2004: 8 citations2005: 14 citations2006: 29 citations2007: 79 citations2008: 127 citations2009: 168 citations2010: 191 citations2011: 176 citations2012: 182 citations2013: 165 citations2014: 191 citations2015: 196 citations2016: 261 citations2017: 273 citations2018: 266 citations2019: 732 citations2020: 766 citations2021: 816 citations2022: 624 citations2023: 440 citations2024: 927 citations2025: 426 citations2026: 25 citations1965–1978: no citations, so these years are not shown1980–1989: no citations, so these years are not shown1991–1993: no citations, so these years are not shown1995–1999: no citations, so these years are not shown2002: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,070 citing papers, 19.1% of this breakdownChina: 1,636 citing papers, 15.1% of this breakdownUnited Kingdom: 642 citing papers, 5.9% of this breakdownCanada: 542 citing papers, 5% of this breakdownGermany: 506 citing papers, 4.7% of this breakdownFrance: 342 citing papers, 3.2% of this breakdownIndia: 338 citing papers, 3.1% of this breakdownAustralia: 324 citing papers, 3% of this breakdownSpain: 276 citing papers, 2.6% of this breakdownItaly: 272 citing papers, 2.5% of this breakdownNetherlands: 224 citing papers, 2.1% of this breakdownBrazil: 218 citing papers, 2% of this breakdown
0%19.1%Other 31.7%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology52.2%
  • Computer Science15.3%
  • Medicine10.5%
  • Agricultural and Biological Sciences7.8%
  • Environmental Science5.7%
  • Immunology and Microbiology2.1%
  • Other6.4%

Topics

  • Computational Drug Discovery Methods6.7%
  • Genetic and phenotypic traits in livestock4.9%
  • Metabolomics and Mass Spectrometry Studies4.4%
  • Genetic Mapping and Diversity in Plants and Animals3.7%
  • Bioinformatics and Genomic Networks3.4%
  • Genomics and Phylogenetic Studies3.2%
  • Other73.7%

Coauthors

All papers

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  1. DrugBank: a comprehensive resource for in silico drug discovery and exploration

    Authors: David S. Wishart, Craig Knox, Anchi Guo, Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey - Nucleic Acids Research, Nucleic Acids Res. 2005 cited by 4,028

  2. Proksee: in-depth characterization and visualization of bacterial genomes

    Authors: Jason R. Grant, Eric Enns, Eric Marinier, Arnab Mandal, Emily K. Herman, Chih-Yu Chen, Morag Graham, Gary H. Van Domselaar, Paul Stothard - Nucleic Acids Research, Nucleic Acids Res. 2023 cited by 1,720

  3. HMDB: the Human Metabolome Database

    Authors: David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser - Nucleic Acids Research, Nucleic Acids Res. 2007 cited by 3,265

  4. Defining the role of Parasutterella, a previously uncharacterized member of the core gut microbiota

    Authors: Tingting Ju, Ji Yoon Kong, Paul Stothard, Benjamin P. Willing - The ISME Journal 2019 cited by 501

  5. The Sequence Manipulation Suite: JavaScript Programs for Analyzing and Formatting Protein and DNA Sequences

    Authors: Paul Stothard - BioTechniques 2000 cited by 1,832

  6. PHASTEST: faster than PHASTER, better than PHAST

    Authors: David S. Wishart, Scott Han, Sukanta Saha, Eponine Oler, Harrison Peters, Jason R. Grant, Paul Stothard, Vasuk Gautam - Nucleic Acids Research, Nucleic Acids Res. 2023 cited by 589

  7. The CGView Server: a comparative genomics tool for circular genomes

    Authors: Jason R. Grant, Paul Stothard - Nucleic Acids Research, Nucleic Acids Res. 2008 cited by 1,527

  8. Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

    Authors: Hans D. Daetwyler, Aurélien Capitan, Hubert Pausch, Paul Stothard, R. van Binsbergen, Rasmus Froberg Brøndum, Xiaoping Liao, Anis Djari, Sabrina Rodriguez, Cécile Grohs, Diane Esquerré, Olivier Bouchez, Marie‐Noëlle Rossignol, Christophe Klopp, Dominique Rocha, Sébastien Fritz, Andre A. Eggen, Phil Bowman, David Coote, Amanda J. Chamberlain, Charlotte Anderson, Curt P VanTassell, Ina Hulsegge, Mike E Goddard, Bernt Guldbrandtsen, Mogens Sandø Lund, R.F. Veerkamp, Didier Boichard, Ruedi Fries, Ben J. Hayes - Nature Genetics 2014 cited by 904

  9. Visualizing and comparing circular genomes using the CGView family of tools

    Authors: Paul Stothard, Jason R. Grant, Gary H. Van Domselaar - Briefings in Bioinformatics, Briefings Bioinform. 1964 cited by 318

  10. Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

    Authors: Mingzhou Li, Shilin Tian, Long Jin, Guangyu Zhou, Ying Li, Yuan Zhang, Tao Wang, Carol K. L. Yeung, Lei Chen, Jideng Ma, Jinbo Zhang, Anan Jiang, Ji Li, Chaowei Zhou, Jie Zhang, Yingkai Liu, Xiaoqing Sun, Hongwei Zhao, Zexiong Niu, Pinger Lou, Lingjin Xian, Xiaoyong Shen, Shaoqing Liu, Shunhua Zhang, Mingwang Zhang, Li Zhu, Surong Shuai, Lin Bai, Guoqing Tang, Haifeng Liu, Yanzhi Jiang, Miaomiao Mai, Jian Xiao, Xun Wang, Qi Zhou, Zhiquan Wang, Paul Stothard, Ming Xue, Xiaolian Gao, Zonggang Luo, Yiren Gu, Hongmei Zhu, Xiaoxiang Hu, Yaofeng Zhao, Graham Plastow, Jinyong Wang, Zhi Jiang, Kui Li, Ning Li, Xuewei Li, Ruiqiang Li - Nature Genetics 2013 cited by 583

  11. Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

    Authors: A.C. Bouwman, Hans D. Daetwyler, Amanda J. Chamberlain, Carla Hurtado Ponce, Mehdi Sargolzaei, Flávio S. Schenkel, Goutam Sahana, Armelle Govignon-Gion, Simon Boitard, Marlies Dolezal, Hubert Pausch, Rasmus Froberg Brøndum, Phil Bowman, Bo Thomsen, Bernt Guldbrandtsen, Mogens Sandø Lund, Bertrand Servin, Dorian J. Garrick, James M. Reecy, Johanna Vilkki, A. Bagnato, Min Wang, Jesse L. Hoff, Robert D. Schnabel, Jeremy F. Taylor, Anna A. E. Vinkhuyzen, Frank Panitz, Christian Bendixen, Lars‐Erik Holm, Birgit Gredler, Chris Hozé, Mekki Boussaha, Marie-Pierre Sanchez, Dominique Rocha, Aurélien Capitan, Thierry Tribout, Anne Barbat, Pascal Croiseau, Cord Drögemüller, Vidhya Jagannathan, Christy Vander Jagt, John J. Crowley, Anna Bieber, Deirdre C. Purfield, D.P. Berry, Reiner Emmerling, Kay‐Uwe Götz, Mirjam Frischknecht, Ingolf Ruß, Johann Sölkner, Curtis P. Van Tassell, Ruedi Fries, Paul Stothard, R.F. Veerkamp, Didier Boichard, Mike E. Goddard, Ben J. Hayes - Nature Genetics 2018 cited by 467

  12. The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

    Authors: Christine G. Elsik, Ross L. Tellam, Kim C. Worley, Richard A. Gibbs, Donna M. Muzny, George M. Weinstock, David L. Adelson, Evan E. Eichler, Laura Elnitski, Roderic Guigó, Debora L. Hamernik, S M Kappes, Harris A. Lewin, David J. Lynn, F. W. Nicholas, Alexandre Reymond, Monique Rijnkels, Loren C. Skow, Evgeny M. Zdobnov, Lawrence B. Schook, James E. Womack, Tyler Alioto, Stylianos E. Antonarakis, Alex Astashyn, Charles E. Chapple, Hsiu-Chuan Chen, Jacqueline Chrast, Francisco Câmara, Olga Ermolaeva, Charlotte N. Henrichsen, Wratko Hlavina, Yuri Kapustin, Boris Kiryutin, Paul Kitts, Felix Kokocinski, Melissa Landrum, Donna Maglott, Kim D. Pruitt, Victor Sapojnikov, Stephen M. J. Searle, Victor Solovyev, Alexandre Souvorov, Catherine Ucla, Carine Wyss, Juan Manuel Anzola, Daniel Gerlach, Eran Elhaik, Dan Graur, Justin Reese, R. C. Edgar, John C. McEwan, Gemma M. Payne, Joy M Raison, Thomas Junier, Evgenia V. Kriventseva, Eduardo Eyras, Mireya Plass, Ravikiran Donthu, Denis M. Larkin, James M. Reecy, Mary Qu Yang, Lin Chen, Ze Cheng, Carol G. Chitko-McKown, George E. Liu, Lakshmi K. Matukumalli, Jiuzhou Song, Bin Zhu, Daniel G. Bradley, Fiona S. L. Brinkman, Lilian Pek Lian Lau, Matthew D. Whiteside, Angela M. Walker, Thomas T. Wheeler, Theresa Casey, J. Bruce German, Danielle G. Lemay, Nauman J. Maqbool, Adrian Molenaar, Seongwon Seo, Paul Stothard, Cynthia L. Baldwin, R. Baxter, Candice Brinkmeyer‐Langford, Wendy C. Brown, Christopher Childers, Timothy Connelley, Shirley A. Ellis, K. L. Fritz, Elizabeth Glass, Carolyn T.A. Herzig, Antti Iivanainen, Kevin K. Lahmers, Anna K. Bennett, C. Michael Dickens, James Gilbert, Darren E. Hagen, Hanni Salih, Jan Aerts, Alexandre Rodrigues Caetano and 207 more - Science 2009 cited by 1,349

  13. Breeding for reduced methane emission and feed-efficient Holstein cows: An international response

    Authors: C.I.V. Manzanilla-Pech, Peter Løvendahl, Daniel M. Gordo, Gareth F. Difford, J.E. Pryce, Flávio S. Schenkel, S. Wegmann, F. Miglior, T.C.S. Chud, Peter J. Moate, S.R.O. Williams, C.M. Richardson, Paul Stothard, Jan Lassen - Journal of Dairy Science 2021 cited by 104

  14. Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle

    Authors: Mohammed Abo-Ismail, Luiz F. Brito, Stephen P. Miller, Mehdi Sargolzaei, D.A. Grossi, Steve S. Moore, Graham Plastow, Paul Stothard, Shadi Nayeri, Flávio S. Schenkel - Genetics Selection Evolution 2017 cited by 117

  15. Interactive microbial genome visualization with GView

    Authors: Aaron J. Petkau, Matthew Stuart-Edwards, Paul Stothard, Gary H. Van Domselaar - Bioinformatics, Bioinform. 2010 cited by 400

  16. Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits

    Authors: Feng Zhang, Yining Wang, Robert Mukiibi, Liuhong Chen, Michael Vinsky, Graham Plastow, J. A. Basarab, Paul Stothard, Changxi Li - BMC Genomics 2020 cited by 134

  17. Genome-wide association study between copy number variants and hoof health traits in Holstein dairy cattle

    Authors: Adrien M. Butty, T.C.S. Chud, Diércles F. Cardoso, L. S. Lopes, F. Miglior, Flávio S. Schenkel, Ángela Cánovas, Irene M. Häfliger, Cord Drögemüller, Paul Stothard, F. Malchiodi, Christine F. Baes - Journal of Dairy Science 2021 cited by 44

  18. The Ruminant Telomere-to-Telomere (RT2T) Consortium

    Authors: Ted Kalbfleisch, Stephanie McKay, Brenda M. Murdoch, David L. Adelson, Diego Almansa-Villa, Gabrielle M. Becker, Linda M. Beckett, María José Benítez-Galeano, Fernando H. Biase, Theresa Casey, Edward B. Chuong, Emily L. Clark, Shannon Clarke, Noelle E. Cockett, Christine Couldrey, Brian W. Davis, Christine G. Elsik, Thomas Faraut, Yahui Gao, Carine Genêt, Patrick G. S. Grady, Jonathan A. Green, Richard Green, Dailu Guan, Darren E. Hagen, Gabrielle A. Hartley, Michael P. Heaton, Savannah J. Hoyt, Wen Huang, Erich D. Jarvis, Jenna Kalleberg, Hasan Khatib, Klaus-Peter Koepfi, James E. Koltes, Sergey Koren, Christa Kuehn, Tosso Leeb, Alexander S. Leonard, George E. Liu, Wai Yee Low, Hunter L McConnell, Kathryn M. McRae, Karen H. Miga, Michelle R. Mousel, Holly L. Neibergs, Temitayo Olagunju, Matt Pennell, Bruna Petry, Mirjam Pewsner, Adam M. Phillippy, Brandon D. Pickett, Paulene Pineda, Tamara Potapova, Satyanarayana Rachagani, Arang Rhie, Monique Rijnkels, Annie Robic, Nélida Rodríguez‐Osorio, Yana Safonova, Gustavo Pimenta Schettini, Robert D. Schnabel, Nagabhishek Sirpu Natesh, Morgan R Stegemiller, Jessica M. Storer, Paul Stothard, Caleb Stull, Gwenola Tosser‐Klopp, Germán M. Traglia, Christopher K. Tuggle, Curtis P. Van Tassell, Corey T. Watson, Rosemarie Weikard, Klaus Wimmers, Shuang Xie, Liu Yang, Timothy P. L. Smith, Rachel J. O’Neill, Benjamin D. Rosen - Nature Genetics 2024 cited by 30

  19. Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

    Authors: Shadi Nayeri, Mehdi Sargolzaei, Mohammed Abo-Ismail, Natalie May, Stephen P. Miller, Flávio S. Schenkel, S. S. Moore, Paul Stothard - BMC Genetics 2016 cited by 185

  20. Comparing thousands of circular genomes using the CGView Comparison Tool

    Authors: Jason R. Grant, Adriano S. Arantes, Paul Stothard - BMC Genomics 2012 cited by 314

  21. Characterization of water treatment-resistant and multidrug-resistant urinary pathogenic Escherichia coli in treated wastewater

    Authors: Shuai Zhi, Paul Stothard, Graham Banting, Candis Scott, Kristin Huntley, Kanghee Ryu, Simon J. G. Otto, Nicholas J. Ashbolt, Sylvia Checkley, Tao Dong, Norma J. Ruecker, Norman F. Neumann - Water Research 2020 cited by 45

  22. Evidence for the evolution, clonal expansion and global dissemination of water treatment-resistant naturalized strains of Escherichia coli in wastewater

    Authors: Shuai Zhi, Graham Banting, Paul Stothard, Nicholas J. Ashbolt, Sylvia Checkley, Kelsey Meyer, Simon J. G. Otto, Norman F. Neumann - Water Research 2019 cited by 55

  23. Whole genome linkage disequilibrium maps in cattle

    Authors: Stephanie McKay, Robert D. Schnabel, Brenda M. Murdoch, Lakshmi K. Matukumalli, Jan Aerts, Wouter Coppieters, Denny H. Crews, Emmanuel Dias‐Neto, C. A. Gill, Chuan Gao, Hideyuki Mannen, Paul Stothard, Zhiquan Wang, Curtis P. Van Tassell, J. L. Williams, Jeremy F. Taylor, S. S. Moore - BMC Genetics 2007 cited by 259

  24. Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

    Authors: Paul Stothard, Jung-Woo Choi, Urmila Basu, Jennifer M. Thomson, Yan Meng, Xiaoping Liao, S. S. Moore - BMC Genomics 2011 cited by 190