Peter D. Stenson
Active 2000–2025
- 56
- Papers
- 26,439
- Citations
- 46
- h-index
- 54
- i10-index
Citations
Citation sources
Countries
Institutions
- Harvard University1.1%
- Broad Institute0.9%
- Inserm0.8%
- Massachusetts General Hospital0.6%
- Howard Hughes Medical Institute0.6%
- Baylor College of Medicine0.5%
- Other95.5%
Fields
- Biochemistry, Genetics and Molecular Biology63.2%
- Medicine24.2%
- Neuroscience4.3%
- Immunology and Microbiology3.1%
- Agricultural and Biological Sciences1.6%
- Computer Science1%
- Other2.6%
Topics
- Genomics and Rare Diseases9.4%
- Genomics and Phylogenetic Studies3.5%
- Genetic Associations and Epidemiology3.4%
- Genomic variations and chromosomal abnormalities3.2%
- Cancer Genomics and Diagnostics3.1%
- RNA and protein synthesis mechanisms2.9%
- Other74.5%
Coauthors
- D.N. Cooper50
- Matthew Mort15
- Edward V. Ball13
- Andrew D. Phillips10
- Yuval Itan8
- Jean‐Laurent Casanova7
- Laurent Abel6
- Nadia Chuzhanova6
- Bertrand Boisson5
- Meltem Ece Kars5
- Rachel Karchin5
- Christopher Douville4
- Gill Bejerano4
- Jian‐Min Chen4
- Jonathan A. Bernstein4
- Karthik A. Jagadeesh4
- Katy Howells4
- Mark J. Daly4
- Michael Krawczak4
- Peng Zhang4
- Anne Puel3
- Claude Férec3
- David N. Cooper3
- David Stein3
All papers
- Analysis of protein-coding genetic variation in 60,706 humans
Authors: Monkol Lek, Konrad J. Karczewski, Eric Vallabh Minikel, Kaitlin E. Samocha, Eric Banks, Timothy R. Fennell, Anne O’Donnell‐Luria, James S. Ware, Andrew Hill, Beryl B. Cummings, Taru Tukiainen, Daniel P. Birnbaum, Jack A. Kosmicki, Laramie E. Duncan, Karol Estrada, Fengmei Zhao, James Zou, Emma Pierce‐Hoffman, Joanne Berghout, D.N. Cooper, Nicole Deflaux, Mark A. DePristo, Ron Do, Jason Flannick, Menachem Fromer, Laura D. Gauthier, Jackie Goldstein, Namrata Gupta, Daniel P. Howrigan, Adam Kieżun, Mitja Kurki, Ami Levy Moonshine, Pradeep Natarajan, Lorena Orozco, Gina M. Peloso, Ryan Poplin, Manuel A. Rivas, Valentín Ruano-Rubio, Samuel A. Rose, Douglas M. Ruderfer, Khalid Shakir, Peter D. Stenson, Christine Stevens, Brett Thomas, Grace Tiao, Maria T. Tusie-Luna, Ben Weisburd, Hong‐Hee Won, Dongmei Yu, David Altshuler, Diego Ardissino, Michael Boehnke, John Danesh, Stacey Donnelly, Roberto Elosúa, José C. Florez, Stacey Gabriel, Gad Getz, Stephen J. Glatt, Christina M. Hultman, Sekar Kathiresan, Markku Laakso, Steven A. McCarroll, Mark I. McCarthy, Dermot McGovern, Ruth McPherson, Benjamin M. Neale, Aarno Palotie, Shaun Purcell, Danish Saleheen, Jeremiah M. Scharf, Pamela Sklar, Patrick F. Sullivan, Jaakko Tuomilehto, Ming T. Tsuang, Hugh Watkins, James G. Wilson, Mark J. Daly, Daniel G. MacArthur - Nature 2015 cited by 10,435
- The Human Gene Mutation Database (HGMD®): optimizing its use in a clinical diagnostic or research setting
Authors: Peter D. Stenson, Matthew Mort, Edward V. Ball, Molly Chapman, Katy Evans, Luı́sa Azevedo, Matthew Hayden, Sally Heywood, David Millar, Andrew D. Phillips, D.N. Cooper - Human Genetics 2020 cited by 825
- Predicting the Functional, Molecular, and Phenotypic Consequences of Amino Acid Substitutions using Hidden Markov Models
Authors: Hashem A. Shihab, Julian Gough, D.N. Cooper, Peter D. Stenson, Gary Barker, Keith J. Edwards, Ian N.M. Day, Tom R. Gaunt - Human Mutation 2012 cited by 1,405
- M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity
Authors: Karthik A. Jagadeesh, Aaron M. Wenger, Mark J. Berger, Harendra Guturu, Peter D. Stenson, D.N. Cooper, Jonathan A. Bernstein, Gill Bejerano - Nature Genetics 2016 cited by 917
- The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies
Authors: Peter D. Stenson, Matthew Mort, Edward V. Ball, Katy Evans, Matthew Hayden, Sally Heywood, Michelle Hussain, Andrew D. Phillips, D.N. Cooper - Human Genetics 2017 cited by 1,417
- Identifying Mendelian disease genes with the Variant Effect Scoring Tool
Authors: Hannah Carter, Christopher Douville, Peter D. Stenson, D.N. Cooper, Rachel Karchin - BMC Genomics 2013 cited by 611
- Human Gene Mutation Database (HGMD®): 2003 update
Authors: Peter D. Stenson, Edward V. Ball, Matthew Mort, Andrew D. Phillips, Jacqueline A. Shiel, Nick Thomas, Shaun S. Abeysinghe, Michael Krawczak, D.N. Cooper - Human Mutation 2003 cited by 1,866
- Phylogenomic analyses provide insights into primate evolution
Authors: Yong Shao, Long Zhou, Li Fang, Lan Zhao, Baolin Zhang, Feng Shao, Jiawei Chen, Chunyan Chen, Xupeng Bi, Xiao-Lin Zhuang, Hongliang Zhu, Jiang Hu, Zongyi Sun, Xin Li, Depeng Wang, Iker Rivas-González, Sheng Wang, Yun-Mei Wang, Wu Chen, Gang Li, Hui‐Meng Lu, Yang Liu, Lukas F. K. Kuderna, Kyle Kai‐How Farh, Pengfei Fan, Li Yu, Ming Li, Zhijin Liu, George P. Tiley, Anne D. Yoder, Christian Roos, Takashi Hayakawa, Tomàs Marquès‐Bonet, Jeffrey Rogers, Peter D. Stenson, D.N. Cooper, Mikkel Heide Schierup, Yong‐Gang Yao, Ya‐Ping Zhang, Wen Wang, Xiao‐Guang Qi, Guojie Zhang, Dong‐Dong Wu - Science 2023 cited by 169
- The Evaluation of Tools Used to Predict the Impact of Missense Variants Is Hindered by Two Types of Circularity
Authors: Dominik G. Grimm, Chloé‐Agathe Azencott, Fabian Aicheler, Udo Gieraths, Daniel G. MacArthur, Kaitlin E. Samocha, D.N. Cooper, Peter D. Stenson, Mark J. Daly, Jordan W. Smoller, Laramie E. Duncan, Karsten Borgwardt - Human Mutation 2015 cited by 393
- The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine
Authors: Peter D. Stenson, Matthew Mort, Edward V. Ball, Katy Shaw, Andrew D. Phillips, D.N. Cooper - Human Genetics 2013 cited by 1,377
- The mutation significance cutoff: gene-level thresholds for variant predictions
Authors: Yuval Itan, Lei Shang, Bertrand Boisson, Michael J. Ciancanelli, Janet Markle, Rubén Martínez‐Barricarte, Eric Scott, Ishaan Shah, Peter D. Stenson, Joseph G. Gleeson, D.N. Cooper, Lluís Quintana‐Murci, Shen‐Ying Zhang, Laurent Abel, Jean‐Laurent Casanova - Nature Methods 2016 cited by 327
- AMELIE speeds Mendelian diagnosis by matching patient phenotype and genotype to primary literature
Authors: Johannes Birgmeier, Maximilian Haeussler, Cole A. Deisseroth, Ethan Steinberg, Karthik A. Jagadeesh, Alexander Ratner, Harendra Guturu, Aaron M. Wenger, Mark Diekhans, Peter D. Stenson, D.N. Cooper, Christopher Ré, Alan H. Beggs, Jonathan A. Bernstein, Gill Bejerano - Science Translational Medicine 2020 cited by 125
- Effect of predicted protein-truncating genetic variants on the human transcriptome
Authors: Manuel A. Rivas, Matti Pirinen, Donald F. Conrad, Monkol Lek, Emily K. Tsang, Konrad J. Karczewski, Julian Maller, Kimberly R. Kukurba, David S. DeLuca, Menachem Fromer, Pedro G. Ferreira, Kevin S. Smith, Rui Zhang, Fengmei Zhao, Eric Banks, Ryan Poplin, Douglas M. Ruderfer, Shaun Purcell, Taru Tukiainen, Eric Vallabh Minikel, Peter D. Stenson, D.N. Cooper, Katharine H. Huang, Timothy J. Sullivan, Jared L. Nedzel, Carlos D. Bustamante, Jin Billy Li, Mark J. Daly, Roderic Guigó, Peter Donnelly, Kristin Ardlie, Michael Sammeth, Emmanouil T. Dermitzakis, Mark I. McCarthy, Stephen B. Montgomery, Tuuli Lappalainen, Daniel G. MacArthur, Ayellet V. Segrè, Taylor Young, Ellen Gelfand, Casandra A. Trowbridge, Lucas D. Ward, Pouya Kheradpour, Benjamin Iriarte, Yan Meng, Cameron D. Palmer, Tõnu Esko, Wendy Winckler, Joel N. Hirschhorn, Manolis Kellis, Gad Getz, Andrey A. Shablin, Gen Li, Yi‐Hui Zhou, Andrew B. Nobel, Ivan Rusyn, Fred A. Wright, Alexis Battle, Sara Mostafavi, Marta Melé, Ferrán Reverter, Jakob M. Goldmann, Daphne Koller, Eric R. Gamazon, Hae Kyung Im, Anuar Konkashbaev, Dan L. Nicolae, Nancy J. Cox, Timothe Flutre, Xiaoquan Wen, Matthew Stephens, Jonathan K. Pritchard, Zhidong Tu, Bin Zhang, Tao Huang, Quan Long, Luan Lin, Jialiang Yang, Jun Zhu, Jun S. Liu, Amanda Brown, Bernadette Mestichelli, Denee Tidwell, Edmund Lo, Mike Salvatore, Saboor Shad, Jeffrey A. Thomas, John T. Lonsdale, Roswell Christopher Choi, Ellen Karasik, Kimberly Ramsey, Michael T. Moser, Barbara A. Foster, Bryan M. Gillard, John Syron, Johnelle Fleming, Harold I. Magazine, Rick Hasz, Gary Walters, Jason Bridge and 98 more - Science 2015 cited by 345
- The human gene damage index as a gene-level approach to prioritizing exome variants
Authors: Yuval Itan, Lei Shang, Bertrand Boisson, Étienne Patin, Alexandre Bolze, Marcela Moncada‐Vélez, Eric Scott, Michael J. Ciancanelli, Fabien G. Lafaille, Janet Markle, Rubén Martínez‐Barricarte, Sarah Jill de Jong, Xiao‐Fei Kong, Patrick Nitschké, Aziz Belkadi, Jacinta Bustamante, Anne Puel, Stéphanie Boisson‐Dupuis, Peter D. Stenson, Joseph G. Gleeson, D.N. Cooper, Lluís Quintana‐Murci, Jean‐Michel Claverie, Shen‐Ying Zhang, Laurent Abel, Jean‐Laurent Casanova - National Academy of Sciences, Proceedings of the National Academy of Sciences 2015 cited by 279
- Analysis of missense variants in the human genome reveals widespread gene-specific clustering and improves prediction of pathogenicity
Authors: Mathieu Quinodoz, Virginie G. Peter, Katarina Cisarova, Béryl Royer‐Bertrand, Peter D. Stenson, D.N. Cooper, Sheila Unger, Andrea Superti‐Furga, Carlo Rivolta - The American Journal of Human Genetics 2022 cited by 85
- Insights into hominid evolution from the gorilla genome sequence
Authors: Aylwyn Scally, Julien Y. Dutheil, LaDeana W. Hillier, Gregory E. Jordan, Ian Goodhead, Javier Herrero, Asger Hobolth, Tuuli Lappalainen, Thomas Mailund, Tomàs Marquès‐Bonet, Shane McCarthy, Stephen H. Montgomery, Petra Schwalie, Amy Tang, Michelle C. Ward, Yali Xue, Bryndís Yngvadóttir, Can Alkan, Lars Nørvang Andersen, Qasim Ayub, Edward V. Ball, Kathryn Beal, Brenda J. Bradley, Yuan Chen, Chris M. Clee, Stephen Fitzgerald, Tina Graves, Yong Gu, P. D. Heath, Andreas Heger, Emre Karakoç, Anja Kolb‐Kokocinski, Gavin K. Laird, Gerton Lunter, Stephen Meader, Matthew Mort, James C. Mullikin, Kasper Munch, Timothy D. O’Connor, Andrew D. Phillips, Javier Prado-Martinez, Anthony S. Rogers, Saba Sajjadian, Dominic Schmidt, Katy Shaw, Jared T. Simpson, Peter D. Stenson, Daniel J. Turner, Linda Vigilant, Albert J. Vilella, Weldon Whitener, Baoli Zhu, D.N. Cooper, Pieter de Jong, Emmanouil T. Dermitzakis, Evan E. Eichler, Paul Flicek, Nick Goldman, Nicholas I. Mundy, Zemin Ning, Duncan T. Odom, Chris P. Ponting, Michael A. Quail, Oliver A. Ryder, Stephen M. J. Searle, Wesley C. Warren, Richard K. Wilson, Mikkel Heide Schierup, Jane Rogers, Chris Tyler‐Smith, Richard Durbin - Nature 2012 cited by 814
- Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
Authors: Robert Fragoza, Jishnu Das, Shayne D. Wierbowski, Jin Liang, Tina N. Tran, Siqi Liang, Juan Felipe Beltrán, Christen A. Rivera-Erick, Kaixiong Ye, Ting‐Yi Wang, Yao Li, Matthew Mort, Peter D. Stenson, D.N. Cooper, Xiaomu Wei, Alon Keinan, John C. Schimenti, Andrew G. Clark, Haiyuan Yu - Nature Communications 2019 cited by 78
- Identification of discriminative gene-level and protein-level features associated with pathogenic gain-of-function and loss-of-function variants
Authors: Çiğdem Sevim Bayrak, David Stein, Aayushee Jain, Kumardeep Chaudhary, Girish N. Nadkarni, Tielman Van Vleck, Anne Puel, Stéphanie Boisson‐Dupuis, Satoshi Okada, Peter D. Stenson, D.N. Cooper, Avner Schlessinger, Yuval Itan - The American Journal of Human Genetics 2021 cited by 56
- Genome-wide prediction of pathogenic gain- and loss-of-function variants from ensemble learning of a diverse feature set
Authors: David Stein, Meltem Ece Kars, Yiming Wu, Çiğdem Sevim Bayrak, Peter D. Stenson, D.N. Cooper, Avner Schlessinger, Yuval Itan - Genome Medicine 2023 cited by 48
- Assessing the Pathogenicity of Insertion and Deletion Variants with the Variant Effect Scoring Tool (VEST‐Indel)
Authors: Christopher Douville, David L. Masica, Peter D. Stenson, D.N. Cooper, Derek M. Gygax, Rick Kim, Michaël Ryan, Rachel Karchin - Human Mutation 2015 cited by 150
- mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome
Authors: Michael J. Meyer, Ryan Lapcevic, Alfonso E. Romero, Mark Yoon, Jishnu Das, Juan Felipe Beltrán, Matthew Mort, Peter D. Stenson, D.N. Cooper, Alberto Paccanaro, Haiyuan Yu - Human Mutation 2016 cited by 142
- Genome-wide detection of human variants that disrupt intronic branchpoints
Authors: Peng Zhang, Quentin Philippot, Weicheng Ren, Wei‐Te Lei, Juan Li, Peter D. Stenson, Pere Soler‐Palacín, Roger Colobrán, Bertrand Boisson, Shen‐Ying Zhang, Anne Puel, Qiang Pan‐Hammarström, Qian Zhang, D.N. Cooper, Laurent Abel, Jean‐Laurent Casanova - National Academy of Sciences, Proceedings of the National Academy of Sciences 2022 cited by 46
- The Human Gene Mutation Database: 2008 update
Authors: Peter D. Stenson, Matthew Mort, Edward V. Ball, Katy Howells, Andrew D. Phillips, Nick Thomas, D.N. Cooper - Genome Medicine 2009 cited by 883
- Methylation-mediated deamination of 5-methylcytosine appears to give rise to mutations causing human inherited disease in CpNpG trinucleotides, as well as in CpG dinucleotides
Authors: D.N. Cooper, Matthew Mort, Peter D. Stenson, Edward V. Ball, Nadia Chuzhanova - Human Genomics 2010 cited by 156
