Sam Abbott
Active 2018–2024
- 86
- Papers
- 25,110
- Citations
- 49
- h-index
- 83
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Mathematics40.3%
- Medicine39%
- Computer Science4.9%
- Social Sciences3.4%
- Psychology2.7%
- Immunology and Microbiology2.4%
- Other7.3%
Topics
- COVID-19 epidemiological studies18.5%
- SARS-CoV-2 and COVID-19 Research11.5%
- COVID-19 Clinical Research Studies6.6%
- SARS-CoV-2 detection and testing3.6%
- COVID-19 Pandemic Impacts3.4%
- COVID-19 and Mental Health3%
- Other53.4%
Coauthors
- Sebastian Funk51
- Joel Hellewell38
- Nikos I Bosse37
- W. John Edmunds29
- James D Munday28
- Timothy Russell27
- Carl A. B. Pearson24
- Adam J. Kucharski23
- Kevin van Zandvoort22
- Rosalind M. Eggo22
- Mark Jit20
- Nicholas G. Davies20
- Akira Endo19
- Amy Gimma19
- CMMID COVID-19 Working Group19
- Christopher I Jarvis19
- Hamish Gibbs19
- Yang Liu19
- Katharine Sherratt18
- Sophie Meakin17
- Stefan Flasche17
- Thibaut Jombart17
- Billy J. Quilty14
- Emily Nightingale14
All papers
- Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study
Authors: Tommy Nyberg, Tommy Nyberg, Neil M Ferguson, Neil M Ferguson, Sophie G Nash, Harriet H Webster, Seth Flaxman, Nick Andrews, Wes Hinsley, Jamie Lopez Bernal, Meaghan Kall, Samir Bhatt, Paula Blomquist, Asad Zaidi, Erik Volz, Nurin Abdul Aziz, Katie Harman, Sebastian Funk, Sam Abbott, Tommy Nyberg, Tommy Nyberg, Neil M Ferguson, Neil M Ferguson, Sophie G Nash, Harriet H Webster, Seth Flaxman, Nick Andrews, Wes Hinsley, Jamie Lopez Bernal, Meaghan Kall, Samir Bhatt, Paula Blomquist, Asad Zaidi, Erik Volz, Nurin Abdul Aziz, Katie Harman, Sebastian Funk, Sam Abbott, Russell Hope, Andre Charlett, Meera Chand, Azra C Ghani, Shaun R Seaman, Gavin Dabrera, Daniela De Angelis, Anne M Presanis, Simon Thelwall, Russell Hope, Andre Charlett, Meera Chand, Azra C Ghani, Shaun R Seaman, Gavin Dabrera, Daniela De Angelis, Anne M Presanis, Simon Thelwall - The Lancet 2022 cited by 1,294
- Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study.
Authors: Tommy Nyberg, Neil M. Ferguson, Sophie Nash, Harriet Webster, Seth Flaxman, Nick Andrews, Wes Hinsley, Jamie Lopez Bernal, Meaghan Kall, Samir Bhatt, Paula Blomquist, Asad Zaidi, Erik Volz, Nurin Abdul Aziz, Katie Harman, Sebastian Funk, Sam Abbott, COVID-19 Genomics UK (COG-UK) Consortium, Russell Hope, André Charlett, Meera Chand, Azra C. Ghani, Shaun R. Seaman, Gavin Dabrera, Daniela De Angelis, Anne M. Presanis, Simon Thelwall - 2022 cited by 1,226
- Practical considerations for measuring the effective reproductive number, Rt
Authors: Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey - PLoS Computational Biology, PLoS Comput. Biol. 2020 cited by 632
- Age-dependent effects in the transmission and control of COVID-19 epidemics
Authors: Nicholas G. Davies, Petra Klepac, Yang Liu, Kiesha Prem, Mark Jit, CMMID COVID-19 working group, Carl A. B. Pearson, Billy J. Quilty, Adam J. Kucharski, Hamish Gibbs, Samuel Clifford, Amy Gimma, Kevin van Zandvoort, James D Munday, Charlie Diamond, W. John Edmunds, Rein M G J Houben, Joel Hellewell, Timothy Russell, Sam Abbott, Sebastian Funk, Nikos I Bosse, Yueqian Fiona Sun, Stefan Flasche, Alicia Roselló, Christopher I Jarvis, Rosalind M. Eggo - Nature Medicine 2020 cited by 1,860
- Early dynamics of transmission and control of COVID-19: a mathematical modelling study
Authors: Adam J. Kucharski, Timothy Russell, Charlie Diamond, Yang Liu, John Edmunds, Sebastian Funk, Rosalind M. Eggo, Fiona Sun, Mark Jit, James D Munday, Nicholas G. Davies, Amy Gimma, Kevin van Zandvoort, Hamish Gibbs, Joel Hellewell, Christopher I Jarvis, Sam Clifford, Billy J. Quilty, Nikos I Bosse, Sam Abbott, Petra Klepac, Stefan Flasche - The Lancet Infectious Diseases 2020 cited by 2,664
- Heavy-tailed sexual contact networks and monkeypox epidemiology in the global outbreak, 2022
Authors: Akira Endo, Hiroaki Murayama, Sam Abbott, Ruwan Ratnayake, Carl A. B. Pearson, W. John Edmunds, Elizabeth Fearon, Sebastian Funk - Science 2022 cited by 215
- Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study
Authors: Adam J. Kucharski, Petra Klepac, Andrew J. K. Conlan, Stephen M. Kissler, Maria Tang, Hannah Fry, Julia R. Gog, W. John Edmunds, Jon C. Emery, Graham F. Medley, James D Munday, Timothy Russell, Quentin J. Leclerc, Charlie Diamond, Simon R. Procter, Amy Gimma, Fiona Yueqian Sun, Hamish Gibbs, Alicia Roselló, Kevin van Zandvoort, Stéphane Hué, Sophie Meakin, Arminder Deol, Gwen Knight, Thibaut Jombart, Anna M. Foss, Nikos I Bosse, Katherine E. Atkins, Billy J. Quilty, Rachel Lowe, Kiesha Prem, Stefan Flasche, Carl A. B. Pearson, Rein M G J Houben, Emily Nightingale, Akira Endo, Damien C. Tully, Yang Liu, Julian Villabona-Arenas, Kathleen O’Reilly, Sebastian Funk, Rosalind M. Eggo, Mark Jit, Eleanor M. Rees, Joel Hellewell, Samuel Clifford, Christopher I Jarvis, Sam Abbott, Megan Auzenbergs, Nicholas G. Davies, David Simons - The Lancet Infectious Diseases 2020 cited by 958
- The effect of control strategies to reduce social mixing on outcomes of the COVID-19 epidemic in Wuhan, China: a modelling study
Authors: Kiesha Prem, Yang Liu, Timothy Russell, Adam J. Kucharski, Rosalind M. Eggo, Nicholas G. Davies, Stefan Flasche, Samuel Clifford, Carl A. B. Pearson, James D Munday, Sam Abbott, Hamish Gibbs, Alicia Roselló, Billy J. Quilty, Thibaut Jombart, Fiona Sun, Charlie Diamond, Amy Gimma, Kevin van Zandvoort, Sebastian Funk, Christopher I Jarvis, W. John Edmunds, Nikos I Bosse, Joel Hellewell, Mark Jit, Petra Klepac - The Lancet Public Health 2020 cited by 2,315
- Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts
Authors: Joel Hellewell, Sam Abbott, Amy Gimma, Nikos I Bosse, Christopher I Jarvis, Timothy Russell, James D Munday, Adam J. Kucharski, W. John Edmunds, Fiona Sun, Stefan Flasche, Billy J. Quilty, Nicholas G. Davies, Yang Liu, Samuel Clifford, Petra Klepac, Mark Jit, Charlie Diamond, Hamish Gibbs, Kevin van Zandvoort, Sebastian Funk, Rosalind M Eggo - The Lancet Global Health 2020 cited by 2,826
- Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study
Authors: Yuyang Chen, Naizhe Li, José Lourenço, Lin Wang, Bernard Cazelles, Lu Dong, Bingying Li, Yang Liu, Mark Jit, Nikos I Bosse, Sam Abbott, Raman Velayudhan, Annelies Wilder-Smith, Huaiyu Tian, Oliver J Brady, Simon R Procter, Kerry LM Wong, Joel Hellewell, Nicholas G Davies, Christopher I Jarvis, Ciara V McCarthy, Graham Medley, Sophie R Meakin, Alicia Rosello, Emilie Finch, Rachel Lowe, Carl A B Pearson, Samuel Clifford, Billy J Quilty, Stefan Flasche, Hamish P Gibbs, Lloyd A C Chapman, Katherine E. Atkins, David Hodgson, Rosanna C Barnard, Timothy W Russell, Petra Klepac, Yalda Jafari, Rosalind M Eggo, Paul Mee, Matthew Quaife, Akira Endo, Sebastian Funk, Stéphane Hué, Adam J Kucharski, W John Edmunds, Kathleen O'Reilly, Rachael Pung, C Julian Villabona-Arenas, Amy Gimma, Kaja Abbas, Kiesha Prem, Gwenan M Knight, Fiona Yueqian Sun, William Waites, James D Munday, Mihaly Koltai, Frank G Sandmann, Damien C Tully - The Lancet Infectious Diseases 2022 cited by 155
- Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study.
Authors: Yuyang Chen, Naizhe Li, José Lourenço, Lin Wang, Bernard Cazelles, Lü Dong, Bingying Li, Yang Liu, Mark Jit, Nikos I Bosse, Sam Abbott, Raman Velayudhan, Annelies Wilder‐Smith, Huaiyu Tian, Oliver J. Brady, CMMID COVID-19 Working Group - 2022 cited by 135
- Predictive performance of multi-model ensemble forecasts of COVID-19 across European nations
Authors: Katharine Sherratt, Hugo Gruson, Rok Grah, Helen Johnson, Rene Niehus, Bastian Prasse, Frank Sandmann, Jannik Deuschel, Daniel Wolffram, Sam Abbott, Alexander Ullrich, Graham Gibson, Evan L Ray, Nicholas G Reich, Daniel Sheldon, Yijin Wang, Nutcha Wattanachit, Lijing Wang, Ján Trnka, Guillaume Obozinski, Tao Sun, Dorina Thanou, Loïc Pottier, Ekaterina Krymova, Jan H. Meinke, Maria Vittoria Barbarossa, Neele Leithäuser, Jan Möhring, Johanna Schneider, Jarosław Wlazło, Jan Fuhrmann, Berit Lange, Isti Rodiah, Prasith Baccam, Heidi Gurung, Steven Stage, Bradley Suchoski, Jozef Budzinski, Robert Walraven, Inmaculada Villanueva, Vít Tuček, Martin Šmíd, Milan Zajíček, Cesar Perez Alvarez, Borja Reina, Nikos I Bosse, Sophie Meakin, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dave Osthus, Pierfrancesco Alaimo Di Loro, Antonello Maruotti, Veronika Eclerová, Andrea Kraus, David Kraus, Lenka Přibylová, Bertsimas Dimitris, Michael Lingzhi Li, Soni Saksham, Jonas Dehning, Sebastian Mohr, Viola Priesemann, Grzegorz Redlarski, Benjamı́n Béjar, Giovanni Ardenghi, Nicola Parolini, Giovanni Ziarelli, Wolfgang Böck, Stefan Heyder, Thomas Hotz, David E Singh, Miguel Guzmán-Merino, Jose L Aznarte, David Moriña, Sergio Alonso, Enric Àlvarez, Daniel López, Clara Prats, Jan Pablo Burgard, Arne Rodloff, Tom Zimmermann, Alexander Kuhlmann, Janez Žibert, Fulvia Pennoni, Fabio Divino, Martí Català, Gianfranco Lovison, Paolo Giudici, Barbara Tarantino, Francesco Bartolucci, Giovanna Jona Lasinio, Marco Mingione, Alessio Farcomeni, Ajitesh Srivastava, Pablo Montero‐Manso, Aniruddha Adiga, Benjamin Hurt, Bryan Lewis, Madhav Marathe and 29 more - eLife 2023 cited by 101
- Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study
Authors: Andrew Clark, Mark Jit, Charlotte Warren‐Gash, Bruce Guthrie, Haoxiang Wang, Stewart W Mercer, Colin Sanderson, Martin McKee, Christopher Troeger, Sok King Ong, Francesco Checchi, Pablo Perel, Sarah Joseph, Hamish Gibbs, Amitava Banerjee, Rosalind M. Eggo, Emily Nightingale, Kathleen O’Reilly, Thibaut Jombart, W. John Edmunds, Alicia Roselló, Fiona Yueqian Sun, Katherine E. Atkins, Nikos I Bosse, Samuel Clifford, Timothy Russell, Arminder Deol, Yang Liu, Simon R. Procter, Quentin J. Leclerc, Graham F. Medley, Gwen Knight, James D Munday, Adam J. Kucharski, Carl A. B. Pearson, Petra Klepac, Kiesha Prem, Rein M G J Houben, Akira Endo, Stefan Flasche, Nicholas G. Davies, Charlie Diamond, Kevin van Zandvoort, Sebastian Funk, Megan Auzenbergs, Eleanor M. Rees, Damien C. Tully, Jon C. Emery, Billy J. Quilty, Sam Abbott, Christian Julián Villabona‐Arenas, Stéphane Hué, Joel Hellewell, Amy Gimma, Christopher I Jarvis - The Lancet Global Health 2020 cited by 1,231
- Effects of non-pharmaceutical interventions on COVID-19 cases, deaths, and demand for hospital services in the UK: a modelling study
Authors: Nicholas G. Davies, Adam J. Kucharski, Rosalind M. Eggo, Amy Gimma, W. John Edmunds, Thibaut Jombart, Kathleen O’Reilly, Akira Endo, Joel Hellewell, Emily Nightingale, Billy J. Quilty, Christopher I Jarvis, Timothy Russell, Petra Klepac, Nikos I Bosse, Sebastian Funk, Sam Abbott, Graham F. Medley, Hamish Gibbs, Carl A. B. Pearson, Stefan Flasche, Mark Jit, Samuel Clifford, Kiesha Prem, Charlie Diamond, Jon C. Emery, Arminder Deol, Simon R. Procter, Kevin van Zandvoort, Yueqian Fiona Sun, James D Munday, Alicia Roselló, Megan Auzenbergs, Gwen Knight, Rein M G J Houben, Yang Liu - The Lancet Public Health 2020 cited by 975
- Using a real-world network to model localized COVID-19 control strategies
Authors: Josh A. Firth, Joel Hellewell, Petra Klepac, Stephen M. Kissler, CMMID COVID-19 Working Group, Mark Jit, Katherine E. Atkins, Samuel Clifford, Christian Julián Villabona‐Arenas, Sophie Meakin, Charlie Diamond, Nikos I Bosse, James D Munday, Kiesha Prem, Anna M. Foss, Emily Nightingale, Kevin van Zandvoort, Nicholas G. Davies, Hamish Gibbs, Graham F. Medley, Amy Gimma, Stefan Flasche, David Simons, Megan Auzenbergs, Timothy Russell, Billy J. Quilty, Eleanor M. Rees, Quentin J. Leclerc, W. John Edmunds, Sebastian Funk, Rein M G J Houben, Gwenan M. Knight, Sam Abbott, Fiona Yueqian Sun, Rachel Lowe, Damien C. Tully, Simon R. Procter, Christopher I Jarvis, Akira Endo, Kathleen O’Reilly, Jon C. Emery, Thibaut Jombart, Alicia Roselló, Arminder Deol, Matthew Quaife, Stéphane Hué, Yang Liu, Rosalind M. Eggo, Carl A. B. Pearson, Adam J. Kucharski, Lewis G. Spurgin - Nature Medicine 2020 cited by 276
- Quarantine and testing strategies in contact tracing for SARS-CoV-2: a modelling study
Authors: Billy J. Quilty, Samuel Clifford, Joel Hellewell, Timothy Russell, Adam J. Kucharski, Stefan Flasche, W. John Edmunds, Katherine E. Atkins, Anna M. Foss, Naomi R. Waterlow, Kaja Abbas, Rachel Lowe, Carl A. B. Pearson, Sebastian Funk, Alicia Roselló, Gwenan M. Knight, Nikos I Bosse, Simon R. Procter, Georgia R. Gore‐Langton, Alicia Showering, James D Munday, Katharine Sherratt, Thibaut Jombart, Emily Nightingale, Yang Liu, Christopher I Jarvis, Graham F. Medley, Oliver J. Brady, Hamish Gibbs, David Simons, Jack Williams, Damien C. Tully, Stefan Flasche, Sophie Meakin, Kevin van Zandvoort, Fiona Yueqian Sun, Mark Jit, Petra Klepac, Matthew Quaife, Rosalind M. Eggo, Frank Sandmann, Akira Endo, Kiesha Prem, Sam Abbott, Rosanna C. Barnard, Yung-Wai D Chan, Megan Auzenbergs, Amy Gimma, Christian Julián Villabona‐Arenas, Nicholas G. Davies - The Lancet Public Health 2021 cited by 240
- Incarceration history and risk of HIV and hepatitis C virus acquisition among people who inject drugs: a systematic review and meta-analysis
Authors: Jack Stone, Hannah Fraser, Aaron G. Lim, Josephine G. Walker, Zoë Ward, Louis MacGregor, Adam Trickey, Sam Abbott, Steffanie A. Strathdee, Daniela Abramovitz, Lisa Maher, Jenny Iversen, Julie Bruneau, Geng Zang, Richard S. Garfein, Yung-Fen Yen, Tasnim Azim, Shruti H. Mehta, Michael-John Milloy, Margaret Hellard, Rachel Sacks‐Davis, Paul Dietze, Campbell Aitken, Malvina Aladashvili, Tengiz Tsertsvadze, Viktor Mravčík, Michel Alary, Élise Roy, Pavlo Smyrnov, Yana Sazonova, April M. Young, Jennifer R. Havens, Vivian Hope, Monica Desai, Ellen Heinsbroek, Sharon Hutchinson, Norah Palmateer, Andrew McAuley, Lucy Platt, Natasha K. Martin, Frederick L. Altice, Matthew Hickman, Peter Vickerman - The Lancet Infectious Diseases 2018 cited by 228
- Accumulation of Immunity in Heavy-Tailed Sexual Contact Networks Shapes Mpox Outbreak Sizes
Authors: Hiroaki Murayama, Carl A. B. Pearson, Sam Abbott, Fuminari Miura, Sung-mok Jung, Elizabeth Fearon, Sebastian Funk, Akira Endo - The Journal of Infectious Diseases 2023 cited by 52
- Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts
Authors: Sam Abbott, Joel Hellewell, Robin N. Thompson, Katharine Sherratt, Hamish Gibbs, Nikos I Bosse, James D Munday, Sophie Meakin, Emma L. Doughty, June Young Chun, Yung-Wai Desmond Chan, Flavio Finger, Paul Campbell, Akira Endo, Carl A. B. Pearson, Amy Gimma, Tim Russell, CMMID COVID modelling group, Stefan Flasche, Adam J. Kucharski, Rosalind M. Eggo, Sebastian Funk - Wellcome Open Research 2020 cited by 286
- Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2
Authors: Sang Woo Park, Kaiyuan Sun, Sam Abbott, Ron Sender, Yinon M. Bar‐On, Joshua S. Weitz, Sebastian Funk, Bryan T. Grenfell, Jantien A. Backer, Jacco Wallinga, Cécile Viboud, Jonathan Dushoff - National Academy of Sciences, Proceedings of the National Academy of Sciences 2023 cited by 49
- The potential health and economic value of SARS-CoV-2 vaccination alongside physical distancing in the UK: a transmission model-based future scenario analysis and economic evaluation
Authors: Frank Sandmann, Nicholas G. Davies, Anna Vassall, W. John Edmunds, Mark Jit, Fiona Yueqian Sun, Christian Julián Villabona‐Arenas, Emily Nightingale, Alicia Showering, Gwenan M. Knight, Katharine Sherratt, Yang Liu, Kaja Abbas, Sebastian Funk, Akira Endo, Joel Hellewell, Alicia Roselló, Rachel Lowe, Matthew Quaife, Amy Gimma, Oliver J. Brady, Jack Williams, Simon R. Procter, Rosalind M. Eggo, Yung-Wai Desmond Chan, James D Munday, Rosanna C. Barnard, Georgia R. Gore‐Langton, Nikos I Bosse, Naomi R. Waterlow, Charlie Diamond, Timothy Russell, Graham F. Medley, Stefan Flasche, Katherine E. Atkins, Kiesha Prem, David Simons, Megan Auzenbergs, Damien C. Tully, Christopher I Jarvis, Kevin van Zandvoort, Sam Abbott, Carl A. B. Pearson, Thibaut Jombart, Sophie Meakin, Anna M. Foss, Adam J. Kucharski, Billy J. Quilty, Hamish Gibbs, Samuel Clifford, Petra Klepac - The Lancet Infectious Diseases 2021 cited by 193
- Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China
Authors: Akira Endo, Sam Abbott, Adam J. Kucharski, Sebastian Funk - Wellcome Open Research 2020 cited by 671
- Invasive versus non-invasive management of older patients with non-ST elevation myocardial infarction (SENIOR-NSTEMI): a cohort study based on routine clinical data
Authors: Amit Kaura, Jonathan A C Sterne, Adam Trickey, Sam Abbott, Abdulrahim Mulla, Benjamin Glampson, Vasileios F. Panoulas, Jim Davies, Kerrie Woods, Joe Omigie, Anoop D Shah, Keith M. Channon, Jonathan Weber, Mark Thursz, Paul Elliott, Harry Hemingway, Bryan Williams, Folkert W. Asselbergs, Michael O’Sullivan, Graham M. Lord, Narbeh Melikian, Tom Johnson, Dárrel P. Francis, Ajay M. Shah, Divaka Perera, Rajesh Kharbanda, Riyaz Patel, Jamil Mayet - The Lancet 2020 cited by 114
- Inference of the SARS-CoV-2 generation time using UK household data
Authors: William S. Hart, Sam Abbott, Akira Endo, Joel Hellewell, Elizabeth Miller, Nick Andrews, Philip K. Maini, Sebastian Funk, Robin N. Thompson - eLife 2022 cited by 73
