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Timothy Durham

Active 2011–2025

16
Papers
24,637
Citations
15
h-index
15
i10-index

Citations

Citations per year for Timothy Durham1972: 1 citations1988: 2 citations1989: 1 citations1990: 1 citations1991: 1 citations1992: 1 citations1993: 1 citations1995: 2 citations1996: 1 citations1998: 1 citations1999: 4 citations2002: 1 citations2004: 2 citations2005: 2 citations2007: 1 citations2008: 3 citations2009: 4 citations2010: 3 citations2011: 32 citations2012: 176 citations2013: 568 citations2014: 590 citations2015: 702 citations2016: 566 citations2017: 560 citations2018: 549 citations2019: 1,130 citations2020: 1,059 citations2021: 905 citations2022: 745 citations2023: 536 citations2024: 792 citations2025: 393 citations2026: 26 citations1973–1987: no citations, so these years are not shown1994: no citations, so this year is not shown1997: no citations, so this year is not shown2000–2001: no citations, so these years are not shown2003: no citations, so this year is not shown2006: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 5,059 citing papers, 29.1% of this breakdownChina: 1,597 citing papers, 9.2% of this breakdownUnited Kingdom: 1,373 citing papers, 7.9% of this breakdownGermany: 1,020 citing papers, 5.9% of this breakdownCanada: 674 citing papers, 3.9% of this breakdownAustralia: 539 citing papers, 3.1% of this breakdownNetherlands: 498 citing papers, 2.9% of this breakdownSpain: 476 citing papers, 2.7% of this breakdownFrance: 474 citing papers, 2.7% of this breakdownItaly: 462 citing papers, 2.6% of this breakdownJapan: 412 citing papers, 2.4% of this breakdownSweden: 365 citing papers, 2.1% of this breakdown
0%29.1%Other 25.5%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology79.7%
  • Medicine11.6%
  • Immunology and Microbiology2.9%
  • Agricultural and Biological Sciences2.1%
  • Neuroscience1.3%
  • Computer Science0.9%
  • Other1.5%

Topics

  • Genomics and Chromatin Dynamics10.5%
  • Epigenetics and DNA Methylation6.4%
  • RNA Research and Splicing6%
  • RNA modifications and cancer6%
  • Cancer-related molecular mechanisms research4.4%
  • RNA and protein synthesis mechanisms3.8%
  • Other62.9%

Coauthors

All papers

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  1. An integrated encyclopedia of DNA elements in the human genome

    Authors: Ian Dunham, Ewan Birney, Javier Herrero, Steven P. Wilder, Damian Keefe, Kathryn Beal, Paul Flicek, Nathan Johnson, Daniel Sobral, Anshul Kundaje, Serafim Batzoglou, Nadine Hussami, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Marc A. Schaub, Shelley F. Aldred, Patrick Collins, Nathan D. Trinklein, Carrie A. Davis, Felix Schlesinger, T Gingeras, Alex Dobin, Wei Lin, Chenghai Xue, Chris Zaleski, Michael T. Baer, Philippe Batut, Kimberly Bell, Sudipto Chakrabortty, Jörg Drenkow, Megan Fastuca, Kata Fejes-Toth, Assaf Gordon, Sonali Jha, Jonathan Preall, Kimberly Presaud, Lei-Hoon See, Huaien Wang, Gregory J. Hannon, Francis Doyle, Scott A. Tenenbaum, Charles B. Epstein, Noam Shoresh, B Bernstein, Tarjei S. Mikkelsen, Alon Goren, Oren Ram, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Timothy Durham, Manching Ku, Thanh Truong, Seth Frietze, Peggy Farnham, Heather Witt, Jennifer Harrow, Timothy J. Hubbard, Felix Kokocinski, Bronwen Aken, Daniel Barrell, Gemma Barson, Andrew Berry, Alexandra Bignell, Veronika Boychenko, Claire Davidson, Gloria Despacio-Reyes, Adam Frankish, James Gilbert, José M. González, Ed Griffiths, Toby Hunt, Mike Kay, Jane Loveland, Deepa Manthravadi, Jonathan Mudge, Gaurab Mukherjee, Gary Saunders, Stephen Searle, Catherine Snow, Charlie Steward, Electra Tapanari, Laurens Wilming, Amonida Zadissa, Rajinder Kaul, Jainab Khatun, Morgan C. Giddings, John Wrobel, Brian A. Risk, Bryan R. Lajoie, Amartya Sanyal, Job Dekker, Gaurav Jain, Stephen G. Landt, M Snyder, Nick Addleman, Keith Bettinger, Alan P. Boyle, Philip Cayting - Nature 2012 cited by 19,606

  2. Mapping and analysis of chromatin state dynamics in nine human cell types

    Authors: Jason Ernst, Pouya Kheradpour, Tarjei S. Mikkelsen, Noam Shoresh, Lucas D. Ward, Charles B. Epstein, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Manching Ku, Timothy Durham, Manolis Kellis, B Bernstein - Nature 2011 cited by 3,096

  3. Nuclear genetic control of mtDNA copy number and heteroplasmy in humans

    Authors: Rahul Gupta, Masahiro Kanai, Timothy Durham, Kristin Tsuo, Jason G. McCoy, Anna V. Kotrys, Wei Zhou, Patrick F. Chinnery, Konrad J. Karczewski, Sarah E. Calvo, Benjamin M. Neale, Vamsi K. Mootha - Nature 2023 cited by 178

  4. Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe

    Authors: Xiaojie Qiu, Arman Rahimzamani, Li Wang, Bingcheng Ren, Qi Mao, Timothy Durham, José L. McFaline‐Figueroa, Lauren M. Saunders, Cole Trapnell, Sreeram Kannan - Cell Systems 2020 cited by 181

  5. Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome

    Authors: Jacob Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble - Genome biology 2020 cited by 133

  6. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds ofDrosophilaandCaenorhabditis elegansTranscription Factors

    Authors: Michelle Kudron, Alec Victorsen, Louis Gevirtzman, LaDeana Hillier, William W. Fisher, Dionne Vafeados, Matt Kirkey, Ann S. Hammonds, Jeffery Gersch, Haneen Ammouri, Martha Wall, Jennifer Moran, David L. Steffen, Matt Szynkarek, Samantha Seabrook-Sturgis, Nader Jameel, Madhura Kadaba, Jaeda Patton, Robert Terrell, Mitch Corson, Timothy Durham, Soo Hyung Park, Swapna Samanta, Mei Han, Jinrui Xu, Koon‐Kiu Yan, S Celniker, Kevin P. White, Lijia Ma, Mark Gerstein, V Reinke, R Waterston - Genetics 2017 cited by 257

  7. Single-cell analysis reveals context-dependent, cell-level selection of mtDNA

    Authors: Anna V. Kotrys, Timothy Durham, Xiaoyan A. Guo, Venkata R. Vantaku, Sareh Parangi, Vamsi K. Mootha - Nature 2024 cited by 59

  8. Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues

    Authors: Jiang Zhu, Mazhar Adli, James Zou, Griet Verstappen, Michael J. Coyne, Xiaolan Zhang, Timothy Durham, Mohammad Reza Miri, Vikram Deshpande, Philip L. De Jager, David A. Bennett, Joseph A. Houmard, Deborah M. Muoio, Tamer T. Önder, Ray Camahort, Chad A. Cowan, Alexander Meissner, Charles B. Epstein, Noam Shoresh, B Bernstein - Cell 2013 cited by 560

  9. Hypoxia extends lifespan and neurological function in a mouse model of aging

    Authors: Robert S. Rogers, Hong Wang, Timothy Durham, Jonathan A. Stefely, Norah A. Owiti, Andrew L. Markhard, L Sandler, Tsz‐Leung To, Vamsi K. Mootha - PLoS Biology 2023 cited by 45

  10. PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition

    Authors: Timothy Durham, Maxwell W. Libbrecht, James Jeffry Howbert, Jeff Bilmes, William Stafford Noble - Nature Communications 2018 cited by 96

  11. Circulating N-lactoyl-amino acids and N-formyl-methionine reflect mitochondrial dysfunction and predict mortality in septic shock

    Authors: Robert S. Rogers, Rohit Sharma, Hardik B. Shah, Owen S. Skinner, Xiaoyan A. Guo, Apekshya Panda, Rahul Gupta, Timothy Durham, Kelsey B Shaughnessy, Jared R. Mayers, Kathryn A. Hibbert, Rebecca M. Baron, Bruce Thompson, Vamsi K. Mootha - Metabolomics 2024 cited by 31

  12. Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

    Authors: Timothy Durham, Riza M. Daza, Louis Gevirtzman, Darren A. Cusanovich, Olubusayo Bolonduro, William Stafford Noble, Jay Shendure, R Waterston - Genome Research 2021 cited by 26

  13. Nuclear genetic control of mtDNA copy number and heteroplasmy in humans

    Authors: Rahul Gupta, Masahiro Kanai, Timothy Durham, Kristin Tsuo, Jason G. McCoy, Patrick F. Chinnery, Konrad J. Karczewski, Sarah E. Calvo, Benjamin M. Neale, Vamsi K. Mootha - medRxiv 2023 cited by 15

  14. Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells

    Authors: Oren Ram, Alon Goren, Ido Amit, Noam Shoresh, Nir Yosef, Jason Ernst, Manolis Kellis, Melissa Gymrek, Robbyn Issner, Michael J. Coyne, Timothy Durham, Xiaolan Zhang, Julie Donaghey, Charles B. Epstein, Aviv Regev, B Bernstein - Cell 2011 cited by 338

  15. Hypoxia ameliorates neurodegeneration and movement disorder in a mouse model of Parkinson’s disease

    Authors: Eizo Marutani, María Miranda, Timothy Durham, Sharon H. Kim, Drèson L. Russell, Presli P. Wiesenthal, Paul Lichtenegger, Marissa Menard, Charlotte F. Brzozowski, Haobo Li, Gary Ruvkun, Joshua D. Meisel, Laura A. Volpicelli‐Daley, Vamsi K. Mootha, Fumito Ichinose - Nature Neuroscience 2025 cited by 15

  16. Matrix prior for data transfer between single cell data types in latent Dirichlet allocation

    Authors: Alan Min, Timothy Durham, Louis Gevirtzman, William Stafford Noble - PLoS Computational Biology, PLoS Comput. Biol. 2022 cited by 1

All 16 papers shown.