Adam R. Rivers

• Andrés Mauricio Caraballo‐Rodríguez4
• Asker Brejnrod4
• Benjamin J. Callahan4
• C. Titus Brown4
• Christian C. Abnet4
• Christian F. Edwardson4
• Claire Duvallet4
• Colin Brislawn4
• Daniel M. Durall4
• Emily K. Cope4
• Eric J. Alm4
• Evan Bolyen4
• Francesco Asnicar4
• Gabriel A. Al‐Ghalith4
• Gavin M. Douglas4
• Harriet Alexander4
• Jai Ram Rideout4
• Jennifer Fouquier4
• John Chase4
• Jordan E. Bisanz4
• Kyle Bittinger4
• Madeleine Ernst4
• Manimozhiyan Arumugam4
• Matthew R. Dillon4

1. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

   著者: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al‐Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo‐Rodríguez, John Chase, Emily K. Cope, Ricardo Silva, Christian Diener, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Sean M. Gibbons, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters ほか 12 名 - Nature Biotechnology 2019 被引用: 24,006

2. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

   著者: Robert M. Bowers, Nikos C. Kyrpides, Ramūnas Stepanauskas, Miranda Harmon‐Smith, Devin F. R. Doud, T. B. K. Reddy, Frederik Schulz, Jessica K. Jarett, Adam R. Rivers, Emiley A. Eloe‐Fadrosh, Susannah G. Tringe, Natalia Ivanova, Alex Copeland, Alicia Clum, Eric D. Becraft, Rex R. Malmstrom, Bruce W. Birren, Mircea Podar, Peer Bork, George M. Weinstock, George M Garrity, Jeremy A. Dodsworth, Shibu Yooseph, Granger Sutton, Frank Oliver Glöckner, Jack A. Gilbert, William Nelson, Steven Hallam, Sean P. Jungbluth, Thijs J. G. Ettema, Scott Tighe, Konstantinos T. Konstantinidis, Wen‐Tso Liu, Brett J. Baker, Thomas Rattei, Jonathan A. Eisen, Brian P. Hedlund, Katherine D. McMahon, Noah Fierer, Rob Knight, ROBERT FINN, Guy Cochrane, Ilene Karsch‐Mizrachi, Gene W Tyson, Christian Rinke, Alla Lapidus, Folker Meyer, Pelin Yilmaz, Donovan H. Parks, A. Murat Eren, Lynn M. Schriml, Jillian F. Banfield, Philip Hugenholtz, Tanja Woyke - Nature Biotechnology 2017 被引用: 2,712

3. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

   著者: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al‐Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo‐Rodríguez, John Chase, Emily K. Cope, Ricardo J.N. Bettencourt da Silva, Christian Diener, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Sean M. Gibbons, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters ほか 12 名 - Nature Biotechnology 2019 被引用: 874

4. ITSxpress: Software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis

   著者: Adam R. Rivers, Kyle C. Weber, Terrence G. Gardner, Shuang Liu, Shalamar D. Armstrong - F1000Research 2018 被引用: 254

5. QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

   著者: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al‐Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo‐Rodríguez, John Chase, Emily K. Cope, Ricardo J.N. Bettencourt da Silva, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters, Yunhu Wan, Mingxun Wang ほか 9 名 - 2018 被引用: 883

6. QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

   著者: Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al‐Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo‐Rodríguez, John Chase, Emily K. Cope, Ricardo J.N. Bettencourt da Silva, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Deanna L. Gibson, Antonio González, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kościółek, Jorden Kreps, Morgan G. I. Langille, Joslynn S. Lee, Ruth E. Ley, Yongxin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney Morgan, Jamie Morton, Ahmad Turan Naimey, José A. Navas-Molina, Louis‐Félix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary L. Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R. Rivers, Michael S. Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez‐Baeza, Emily Vogtmann, Max von Hippel, William A. Walters, Yunhu Wan, Mingxun Wang ほか 10 名 - 2018 被引用: 584

7. Sizing up metatranscriptomics

   著者: Mary Ann Moran, Brandon M. Satinsky, Scott Gifford, Haiwei Luo, Adam R. Rivers, Leong‐Keat Chan, Jun Meng, Bryndan P. Durham, C.-K. James Shen, Vanessa A. Varaljay, Christa B. Smith, Patricia L. Yager, Brian M. Hopkinson - The ISME Journal 2012 被引用: 362

8. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

   著者: David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2016 被引用: 211

9. Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon

   著者: Justin N. Vaughn, Sandra E. Branham, Brian Abernathy, Amanda M. Hulse‐Kemp, Adam R. Rivers, Amnon Levi, W. Patrick Wechter - Nature Communications 2022 被引用: 31

10. GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

    著者: Ravin Poudel, Lidimarie Trujillo Rodríguez, Christopher R. Reisch, Adam R. Rivers - GigaScience 2022 被引用: 20

11. Advancing Equity and Inclusion in Microbiome Research and Training

    著者: Alicia J. Foxx, Karla P. Franco Meléndez, Janani Hariharan, Ariangela J. Kozik, Cassandra J. Wattenburger, Filipa Godoy‐Vitorino, Adam R. Rivers - mSystems 2021 被引用: 35

12. Nine new RNA viruses associated with the fire ant Solenopsis invicta from its native range

    著者: Steven M. Valles, Adam R. Rivers - Virus Genes 2019 被引用: 39

13. Intrinsic variation in the vertically transmitted core virome of the mosquito Aedes aegypti

    著者: Heather Coatsworth, Jovana Bozic, Juliana M. Carrillo, Eva A. Buckner, Adam R. Rivers, Rhoel R. Dinglasan, Derrick Mathias - Molecular Ecology 2022 被引用: 25

14. Genomic Signatures for Sedimentary Microbial Utilization of Phytoplankton Detritus in a Fast-Flowing Estuary

    著者: M. W. Smith, Lydie Herfort, Adam R. Rivers, Holly M. Simon - Frontiers in Microbiology 2019 被引用: 17

15. Harnessing AI to Transform Agriculture and Inform Agricultural Research

    著者: Debra P. C. Peters, Adam R. Rivers, Jerry L. Hatfield, Danielle G. Lemay, Simon Liu, Bruno Basso - IT Professional, IT Prof. 2020 被引用: 27

16. Under-the-Radar Dengue Virus Infections in Natural Populations of Aedes aegypti Mosquitoes

    著者: Sean M. Boyles, Carla Mavian, Esteban Finol, Maria Ukhanova, Caroline J. Stephenson, Gabriela Hamerlinck, Seokyoung Kang, Caleb Baumgartner, Mary Geesey, Israel Stinton, Katie F. Williams, Derrick Mathias, Mattia Prosperi, Volker Mai, Marco Salemi, Eva A. Buckner, John A. Lednicky, Adam R. Rivers, Rhoel R. Dinglasan - mSphere 2020 被引用: 25

17. AI Down on the Farm

    著者: Kenneth A. Sudduth, M. Jennifer Woodward-Greene, Bryan W. Penning, Martin A. Locke, Adam R. Rivers, Kristen S. Veum - IT Professional, IT Prof. 2020 被引用: 15

18. ITSxpress version 2: software to rapidly trim internal transcribed spacer sequences with quality scores for amplicon sequencing

    著者: Sveinn V. Einarsson, Adam R. Rivers - Microbiology Spectrum 2024 被引用: 14

19. Policy-Driven Transfer Learning in Resource-Limited Animal Monitoring

    著者: Nisha Pillai, Aditi Virupakshaiah, Harrison Smith, Amanda Ashworth, Prasanna Gowda, Phillip Owens, Adam R. Rivers, Bindu Nanduri, Mahalingam Ramkumar - IEEE International Conference on Future Machine Learning and Data Science (FMLDS) 2025 被引用: 1

20. Primer design through submodular function estimation

    著者: Yixin Chen, Yunheng Han, Ao Wang, Aaron Hong, Adam R. Rivers, Alan Kuhnle, Christina Boucher - Bioinform. 2026 被引用: 0

21. Denoised Diffusion for Object-Focused Image Augmentation

    著者: Nisha Pillai, Aditi Virupakshaiah, Harrison Smith, Amanda Ashworth, Prasanna Gowda, Phillip Owens, Adam R. Rivers, Bindu Nanduri, Mahalingam Ramkumar - IEEE International Conference on Advances in Data-Driven Analytics And Intelligent Systems (ADACIS) 2025 被引用: 0

全 21 件を表示しました。