I-Min A. Chen
1989–2025 年に発表
- 別表記
- I.-Min A. Chen
- 58
- 論文数
- 24,183
- 被引用数
- 33
- h 指数
- 40
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology48.6%
- Environmental Science26.5%
- Medicine7.3%
- Agricultural and Biological Sciences5.4%
- Computer Science3.8%
- Engineering1.7%
- その他6.7%
トピック
- Genomics and Phylogenetic Studies14.5%
- Microbial Community Ecology and Physiology9.4%
- Gut microbiota and health6.3%
- Bacteriophages and microbial interactions5.8%
- RNA and protein synthesis mechanisms2.3%
- Microbial Metabolic Engineering and Bioproduction2.2%
- その他59.5%
共著者
- Krishna Palaniappan24
- Victor M. Markowitz24
- Natalia Ivanova22
- Nikos Kyrpides22
- Ken Chu21
- Marcel Huntemann20
- T. B. K. Reddy19
- Ernest Szeto17
- Anna Ratner16
- Supratim Mukherjee16
- Simon Roux14
- Emiley A. Eloe‐Fadrosh13
- Nikos C. Kyrpides13
- Neha Varghese12
- Jinghua Huang9
- Tanja Woyke9
- Konstantinos Mavrommatis8
- Anthony Kosky7
- Galina Ovchinnikova7
- Manoj Pillay7
- David Páez-Espino6
- Iain Anderson6
- Natalia N. Ivanova6
- Alex Copeland5
全論文
- A genomic catalog of Earth’s microbiomes
著者: Stephen Nayfach, Simon Roux, R. Seshadri, Daniel Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, David Páez-Espino, I-Min A. Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T. B. K. Reddy, Torben Nielsen, Edward Kirton, José P. Faria, Janaka N. Edirisinghe, Christopher S. Henry, Sean P. Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M. Wood‐Charlson, Adam P. Arkin, Susannah G. Tringe, Axel Visel, Helena Abreu, Silvia G. Acinas, Eric Allen, Michelle A. Allen, Lauren V. Alteio, Gary L. Andersen, Alexandre M. B. Anesio, Graeme T. Attwood, Viridiana Avila‐Magaña, Yacine Badis, Jake V. Bailey, Brett J. Baker, Petr Baldrián, Hazel A. Barton, David A. C. Beck, Eric D. Becraft, Harry R. Beller, J. Michael Beman, Rizlan Bernier‐Latmani, Timothy D. Berry, Anthony D. Bertagnolli, Stefan Bertilsson, Jennifer Bhatnagar, Jordan T. Bird, Jeffrey L. Blanchard, Sara E. Blumer‐Schuette, Brendan J. M. Bohannan, Mikayla A. Borton, Allyson Brady, Susan H. Brawley, Juliet Brodie, Steven D. Brown, Jennifer R. Brum, Andreas Brune, Donald A. Bryant, Alison Buchan, Daniel H. Buckley, Joy Buongiorno, Hinsby Cadillo‐Quiroz, Sean M. Caffrey, Ashley Campbell, Barbara J. Campbell, Stephanie Carr, JoLynn Carroll, S. Craig Cary, Anna M. Cates, Rose Ann Cattolico, Ricardo Cavicchioli, Ludmila Chistoserdova, Maureen L. Coleman, Philippe Constant, Jonathan M. Conway, Walter P. Mac Cormack, Sean A. Crowe, Byron C. Crump, Cameron R. Currie, Rebecca Daly, Kristen M. DeAngelis, Vincent J. Denef, Stuart E. Denman, Adey Feleke Desta, Hebe M. Dionisi, Jeremy A. Dodsworth, Nina Dombrowski, Timothy J. Donohue, Mark Dopson, Timothy Driscoll, Peter F. Dunfield, Christopher L. Dupont, Katherine A. Dynarski, Virginia P. Edgcomb, Elizabeth A. Edwards, Mostafa S. Elshahed, Israel Figueroa ほか 167 名 - Nature Biotechnology 2020 被引用: 973
- IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata
著者: Antonio Pedro Camargo, Stephen Nayfach, I-Min A. Chen, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Stephan Ritter, T. B. K. Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Simon Roux - Nucleic Acids Research, Nucleic Acids Res. 2022 被引用: 459
- The IMG/M data management and analysis system v.7: content updates and new features
著者: I-Min A. Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Cody Webb, Dongying Wu, Neha Varghese, T. B. K. Reddy, Supratim Mukherjee, Galina Ovchinnikova, Matt Nolan, Rekha Seshadri, Simon Roux, Axel Visel, Tanja Woyke, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Natalia Ivanova - Nucleic Acids Research, Nucleic Acids Res. 2022 被引用: 396
- IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
著者: Simon Roux, David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, T. B. K. Reddy, Stephen Nayfach, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2020 被引用: 368
- The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
著者: I-Min A. Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Neha Varghese, Rekha Seshadri, Simon Roux, Tanja Woyke, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2020 被引用: 515
- IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
著者: I-Min A. Chen, Ken Chu, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Marcel Huntemann, Neha Varghese, James R. White, Rekha Seshadri, Tatyana Smirnova, Edward Kirton, Sean P. Jungbluth, Tanja Woyke, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2018 被引用: 919
- Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9
著者: Supratim Mukherjee, Dimitri Stamatis, Cindy Tianqing Li, Galina Ovchinnikova, Jon Bertsch, Jagadish Chandrabose Sundaramurthi, Mahathi Kandimalla, Paul A. Nicolopoulos, Alessandro Favognano, I-Min A. Chen, Nikos Kyrpides, T. B. K. Reddy - Nucleic Acids Research, Nucleic Acids Res. 2022 被引用: 116
- DOE JGI Metagenome Workflow
著者: Alicia Clum, Marcel Huntemann, Brian Bushnell, Brian Foster, Bryce Foster, Simon Roux, Patrick Hajek, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Yuko Yoshinaga, Ronan C. O’Malley, R. Seshadri, Nikos C. Kyrpides, Emiley A. Eloe‐Fadrosh, I-Min A. Chen, Alex Copeland, Natalia Ivanova - mSystems 2021 被引用: 131
- IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
著者: Antônio Pedro Camargo, Lee Call, Simon Roux, Stephen Nayfach, Marcel Huntemann, Krishna Palaniappan, Anna Ratner, Ken Chu, Supratim Mukherjee, T. B. K. Reddy, I-Min A. Chen, Natalia Ivanova, Emiley A. Eloe‐Fadrosh, Tanja Woyke, David A. Baltrus, Salvador Castañeda-Barba, Fernando de la Cruz, Barbara E. Funnell, James P. J. Hall, Aindrila Mukhopadhyay, Eduardo P. C. Rocha, Thibault Stalder, Eva M. Top, Nikos C. Kyrpides - Nucleic Acids Research 2023 被引用: 89
- IMG: the integrated microbial genomes database and comparative analysis system
著者: Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2011 被引用: 1,367
- Genomes OnLine Database (GOLD) v.8: overview and updates
著者: Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Jagadish Chandrabose Sundaramurthi, Janey Lee, Mahathi Kandimalla, I-Min A. Chen, Nikos Kyrpides, T. B. K. Reddy - Nucleic Acids Research, Nucleic Acids Res. 2020 被引用: 218
- Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
著者: R. Seshadri, Simon Roux, Katharina J. Huber, Dongying Wu, Sora Yu, Daniel Udwary, Lee Call, Stephen Nayfach, Richard L. Hahnke, Rüdiger Pukall, James R. White, Neha Varghese, Cody Webb, Krishna Palaniappan, L.C. Reimer, J. Sarda Carbasse, Jonathon Bertsch, Supratim Mukherjee, T. B. K. Reddy, Patrick Hajek, Marcel Huntemann, I-Min A. Chen, Alex Spunde, Alicia Clum, Nicole Shapiro, Zong‐Yen Wu, Zhiying Zhao, Yu‐Guang Zhou, Lyudmila I. Evtushenko, Sofie Thijs, Vincent Stevens, Emiley A. Eloe‐Fadrosh, Nigel J. Mouncey, Yasuo Yoshikuni, William B. Whitman, Hans‐Peter Klenk, Tanja Woyke, Markus Göker, Nikos C. Kyrpides, Natalia Ivanova - Cell Genomics 2022 被引用: 65
- IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase
著者: Krishnaveni Palaniappan, I-Min A. Chen, Ken Chu, Anna Ratner, Rekha Seshadri, Nikos Kyrpides, Natalia N. Ivanova, Nigel J. Mouncey - Nucleic Acids Research, Nucleic Acids Res. 2019 被引用: 103
- Structure, function and diversity of the healthy human microbiome
著者: Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger, Asif Chinwalla, Heather H. Creasy, Ashlee M. Earl, Michael G. FitzGerald, Robert S. Fulton, Michelle Giglio, Kymberlie Hallsworth-Pepin, Elizabeth A. Lobos, Ramana Madupu, Vincent Magrini, John C. Martin, Makedonka Mitreva, Donna M. Muzny, Erica Sodergren, James Versalovic, Aye Wollam, Kim C. Worley, Jennifer R. Wortman, Sarah Young, Qiandong Zeng, Kjersti M. Aagaard, Olukemi O. Abolude, Emma Allen‐Vercoe, Eric J. Alm, Lucia Alvarado, Gary L. Andersen, Scott Anderson, Elizabeth L. Appelbaum, Harindra Arachchi, Gary C. Armitage, Cesar Arze, Tulin Ayvaz, Carl C. Baker, Lisa Begg, Tsegahiwot Belachew, Veena Bhonagiri, Monika Bihan, Martin J. Blaser, Toby Bloom, Vivien Bonazzi, J. Paul Brooks, Gregory A. Buck, Christian Buhay, Dana Busam, Joseph L. Campbell, Shane R. Canon, Brandi L. Cantarel, Patrick Chain, I-Min A. Chen, Lei Chen, Shaila Chhibba, Ken Chu, Dawn Ciulla, José C. Clemente, Sandra W. Clifton, Sean Conlan, Jonathan Crabtree, Mary A. Cutting, Noam J. Davidovics, Catherine Davis, Todd Z. DeSantis, Carolyn Deal, Kimberley D. Delehaunty, Floyd E. Dewhirst, Elena Deych, Yan Ding, David J. Dooling, Shannon Dugan, W. Michael Dunne, A. Scott Durkin, R. C. Edgar, Rachel Erlich, Candace N. Farmer, Ruth M. Farrell, Karoline Faust, Michael Feldgarden, Victor Felix, Sheila Fisher, Anthony A. Fodor, Larry J. Forney, Leslie Foster, Valentina Di Francesco, Jonathan Friedman, Dennis C. Friedrich, Catrina C. Fronick, Lucinda Fulton, Hongyu Gao, M. Nathalia Garcia, Georgia Giannoukos, Christina Giblin, Maria Y. Giovanni, Jonathan M. Goldberg, Johannes B. Goll, Antonio González, Allison Griggs ほか 148 名 - Nature 2012 被引用: 12,107
- IMG/M: integrated genome and metagenome comparative data analysis system
著者: I-Min A. Chen, Victor M. Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben Nielsen, Natalia Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2016 被引用: 462
- IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
著者: David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2016 被引用: 211
- NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
著者: Fotis A. Baltoumas, Evangelos Karatzas, Sirui Liu, Sergey Ovchinnikov, Yorgos Sofianatos, I-Min A. Chen, Nikos C. Kyrpides, Georgios A. Pavlopoulos - Nucleic Acids Research 2023 被引用: 22
- Genomes OnLine database (GOLD) v.7: updates and new features
著者: Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Hema Y. Katta, Alejandro Mojica, I-Min A. Chen, Nikos Kyrpides, T. B. K. Reddy - Nucleic Acids Research, Nucleic Acids Res. 2018 被引用: 246
- IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
著者: David Páez-Espino, Simon Roux, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Marcel Huntemann, T. B. K. Reddy, Joan Carles Pons, Mercè Llabrés, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2018 被引用: 176
- Genomes OnLine Database (GOLD) v.10: new features and updates
著者: Supratim Mukherjee, Dimitri Stamatis, Cindy Tianqing Li, Galina Ovchinnikova, Mahathi Kandimalla, Van Handke, Anuha Reddy, Natalia Ivanova, Tanja Woyke, Emiley A. Eloe‐Fadrosh, I-Min A. Chen, Nikos C. Kyrpides, T. B. K. Reddy - Nucleic Acids Research 2024 被引用: 33
- The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
著者: Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, H. James Tripp, David Páez-Espino, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor Markowitz, Nikos C. Kyrpides - Standards in Genomic Sciences 2015 被引用: 384
- IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
著者: Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor M. Markowitz, Nikos Kyrpides, Natalia Ivanova - Nucleic Acids Research, Nucleic Acids Res. 2016 被引用: 95
- IMG 4 version of the integrated microbial genomes comparative analysis system
著者: Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2013 被引用: 570
- IMG/M 4 version of the integrated metagenome comparative analysis system
著者: Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides - Nucleic Acids Research, Nucleic Acids Res. 2013 被引用: 275
