Anton Nekrutenko
1998–2025 年に発表
- 71
- 論文数
- 27,273
- 被引用数
- 45
- h 指数
- 61
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology50.9%
- Decision Sciences12.7%
- Medicine10.6%
- Agricultural and Biological Sciences8.6%
- Computer Science4.7%
- Environmental Science3.7%
- その他8.8%
トピック
- Genomics and Phylogenetic Studies7.4%
- Scientific Computing and Data Management5.9%
- RNA and protein synthesis mechanisms2.9%
- Distributed and Parallel Computing Systems2.6%
- Chromosomal and Genetic Variations2.6%
- Research Data Management Practices2.2%
- その他76.4%
共著者
- James Taylor30
- Daniel Blankenberg15
- Dannon Baker15
- Enis Afgan15
- Björn Grüning11
- Jeremy Goecks11
- Nate Coraor11
- The Galaxy Team10
- John Chilton9
- Kateryna D. Makova9
- Bérénice Batut7
- Dave Bouvier7
- Marius van den Beek7
- Sergei L. Kosakovsky Pond7
- Dave Clements6
- Nicola Soranzo6
- Webb Miller6
- Wen‐Hsiung Li6
- Gregory Von Kuster5
- Martin Čech5
- Richard Burhans5
- Ross C. Hardison5
- Stephen D. Shank5
- Steven Weaver5
全論文
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
著者: The Galaxy Community, Enis Afgan, Anton Nekrutenko, Björn Grüning, Daniel Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander Ostrovsky, Alexandru Mahmoud, Andrew Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anton Nekrutenko, Anup Kumar, Arthur C. Eschenlauer, Assunta D DeSanto, Aysam Guerler, Beatriz Serrano‐Solano, Bérénice Batut, Björn Grüning, Bradley W. Langhorst, Bridget Carr, Bryan Raubenolt, Cameron Hyde, Catherine Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel Blankenberg, Daniel Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David Anderson de Lima Morais, David López Tabernero, Delphine Larivière, Engy Nasr, Enis Afgan, Federico Zambelli, Florian Heyl, Fotis Psomopoulos, Frederik Coppens, Gareth Price, Gianmauro Cuccuru, Gildas Le Corguillé, Greg Von Kuster, Gulsum Gudukbay Akbulut, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman‐Jackson, Jeremy Goecks, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Le Bras Yvan, Lucille Lopez‐Delisle, Luke Sargent, Madeline E. Bassetti, M. A. Tangaro, Marius van den Beek, Martin Čech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael C. Schatz, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H.P. Vorderman, Saskia Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon Bray, Simon Gladman, Simone Leo, Subina Mehta, Timothy J. Griffin, Vahid Jalili ほか 7 名 - Nucleic Acids Research, Nucleic Acids Res. 2022 被引用: 1,364
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
著者: Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Saskia D. Hiltemann, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, Daniel J. Blankenberg - Nucleic Acids Research, Nucleic Acids Res. 2018 被引用: 3,935
- The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update
著者: The Galaxy Community, Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon, Dannon Baker, Madeline E. Bassetti, Bérénice Batut, Matthias Bernt, Daniel Blankenberg, Aureliano Bombarely, Anthony Bretaudeau, Catherine Bromhead, Melissa L. Burke, Patrick K. Capon, Martin Čech, María Chavero-Diez, John Chilton, Tyler J Collins, Frederik Coppens, Nate Coraor, Gianmauro Cuccuru, Fabio Cumbo, John Davis, Paul F De Geest, Willem de Koning, Martin Demko, Assunta D DeSanto, José Manuel Domínguez Begines, Maria Doyle, Bert Droesbeke, Anika Erxleben-Eggenhofer, Melanie Christine Föll, Giulio Formenti, Anne Fouilloux, Rendani Gangazhe, Tanguy Genthon, Jeremy Goecks, Alejandra N Gonzalez Beltran, Nuwan Goonasekera, Nadia Goué, Timothy J. Griffin, Björn Grüning, Aysam Guerler, Sveinung Gundersen, Ove Gustafsson, Christina Hall, Thomas W.R. Harrop, Helge Hecht, Alireza Heidari, Tillman Heisner, Florian Heyl, Saskia Hiltemann, Hans-Rudolf Hotz, Cameron Hyde, Pratik Jagtap, Julia Jakiela, James E. Johnson, Jayadev Joshi, Marie Jossé, Khaled Jumah, Matúš Kalaš, Katarzyna Kamieniecka, Tunc Kayikcioglu, Markus Konkol, Leonid Kostrykin, Natalie Kucher, Anup Kumar, Mira Kuntz, Delphine Larivière, Ross Lazarus, Yvan Le Bras, Gildas Le Corguillé, Justin Lee, Simone Leo, Leandro Liborio, Romane Libouban, David López Tabernero, Lucille Lopez‐Delisle, Laila S Los, Alexandru Mahmoud, Igor V. Makunin, Pierre Marin, Subina Mehta, Winnie Mok, Pablo Moreno, François Antoine Morier-Genoud, Stephen Mosher, Teresa Müller, Engy Nasr, Anton Nekrutenko, Tiffanie M. Nelson, Asime J Oba, Alexander Ostrovsky, Polina V Polunina, Krzysztof Poterlowicz, Elliott J. Price, Gareth Price, Helena Rasche ほか 31 名 - Nucleic Acids Research 2024 被引用: 819
- Sequencing error profiles of Illumina sequencing instruments
著者: Nicholas Stoler, Anton Nekrutenko - NAR Genomics and Bioinformatics 2021 被引用: 461
- HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies
著者: Sergei L. Kosakovsky Pond, Art F. Y. Poon, Ryan Velazquez, Steven Weaver, N. Lance Hepler, Ben Murrell, Stephen D. Shank, Brittany Rife Magalis, Dave Bouvier, Anton Nekrutenko, Sadie R Wisotsky, Stephanie J. Spielman, Simon D. W. Frost, Spencer V. Muse - Molecular Biology and Evolution 2019 被引用: 776
- Ten Simple Rules for Reproducible Computational Research
著者: Geir Kjetil Sandve, Anton Nekrutenko, James Taylor, Eivind Hovig - PLoS Computational Biology, PLoS Comput. Biol. 2013 被引用: 825
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
著者: Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel J. Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko - Nucleic Acids Research, Nucleic Acids Res. 2020 被引用: 548
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
著者: Enis Afgan, Dannon Baker, Marius van den Beek, Daniel J. Blankenberg, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Carl Eberhard, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Gregory Von Kuster, Eric Rasche, Nicola Soranzo, Nitesh Turaga, James Taylor, Anton Nekrutenko, Jeremy Goecks - Nucleic Acids Research, Nucleic Acids Res. 2016 被引用: 2,329
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
著者: Jeremy Goecks, Anton Nekrutenko, James Taylor, The Galaxy Team - Genome biology 2010 被引用: 3,531
- Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
著者: Michael C. Schatz, Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L. Grossman, Ira M. Hall, Kasper D. Hansen, Jonathan Lawson, Jeffrey T. Leek, Anne O’Donnell‐Luria, Stephen Mosher, Martin Morgan, Anton Nekrutenko, Brian D. O’Connor, Kevin Osborn, Benedict Paten, Candace Patterson, Frederick J. Tan, Casey Overby Taylor, Jennifer Vessio, Levi Waldron, Ting Wang, Kristin Wuichet, Alexander Baumann, Andrew Rula, Anton Kovalsy, C. Bernard, Derek Caetano-Anollés, Geraldine Van Der Auwera, Justin Canas, K. Ümit Yüksel, Kate Herman, Megan Taylor, Marianie Simeon, Michaël Baumann, Qi Wang, Robert Title, Ruchi Munshi, Sushma Chaluvadi, Valerie B Reeves, William Disman, Salin Thomas, Allie Hajian, Elizabeth Kiernan, Namrata Gupta, Trish Vosburg, Ludwig Geistlinger, Marcel Ramos, Sehyun Oh, Dave Rogers, Frances McDade, Mim Hastie, Nitesh Turaga, Alexander Ostrovsky, Alexandru Mahmoud, Dannon Baker, Dave Clements, Katherine E.L. Cox, Keith Suderman, Nataliya Kucher, Sergey Golitsynskiy, Samantha Zarate, Sarah J. Wheelan, Kai Kammers, Ana Stevens, Carolyn M. Hutter, Christopher Wellington, Elena M. Ghanaim, Ken Wiley, Shurjo K. Sen, Valentina Di Francesco, Deni s Yuen, Brian Walsh, Luke Sargent, Vahid Jalili, John Chilton, Lori Shepherd, Benjamin J. Stubbs, Ash O’Farrell, Benton A. Vizzier, Charles Overbeck, Charles Reid, David Steinberg, Elizabeth A. Sheets, Julian Lucas, Lon Blauvelt, Louise Cabansay, Noah Warren, Brian Hannafious, Tim Harris, Radhika Reddy, Eric S. Torstenson, M. Katie Banasiewicz, Haley Abel, Jason Walker - Cell Genomics 2022 被引用: 130
- Galaxy: A platform for interactive large-scale genome analysis
著者: Belinda Giardine, Cathy Riemer, Ross C. Hardison, Richard Burhans, Laura Elnitski, Prachi Shah, Yi Zhang, Daniel Blankenberg, István Albert, James Taylor, Webb Miller, W. James Kent, Anton Nekrutenko - Genome Research 2005 被引用: 2,071
- Community-Driven Data Analysis Training for Biology
著者: Bérénice Batut, Saskia Hiltemann, Andrea Bagnacani, Dannon Baker, Vivek Bhardwaj, Clemens Blank, Anthony Bretaudeau, Loraine Brillet-Guéguen, Martin Čech, John Chilton, Dave Clements, Olivia Doppelt‐Azeroual, Anika Erxleben, Mallory Freeberg, Simon Gladman, Youri Hoogstrate, Hans-Rudolf Hotz, Torsten Houwaart, Pratik Jagtap, Delphine Larivière, Gildas Le Corguillé, Thomas Manke, Fabien Mareuil, Fidel Ramírez, Devon Ryan, Florian Christoph Sigloch, Nicola Soranzo, Joachim Wolff, Pavankumar Videm, Markus Wolfien, Aisanjiang Wubuli, Dilmurat Yusuf, James Taylor, Rolf Backofen, Anton Nekrutenko, Björn Grüning - Cell Systems 2018 被引用: 218
- Manipulation of FASTQ data with Galaxy
著者: Daniel Blankenberg, Assaf Gordon, Gregory Von Kuster, Nathan Coraor, James Taylor, Anton Nekrutenko, the Galaxy Team - Bioinformatics, Bioinform. 2010 被引用: 711
- Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
著者: Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko, Alexander Ostrovsky, Marc Palmada‐Flores, Brandon D. Pickett, K Siddique-e Rabbani, Agostinho Antunes, Jennifer Balacco, Mark Chaisson, Haoyu Cheng, Joanna Collins, Mélanie Couture, Alexandra Denisova, Olivier Fédrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomàs Marquès‐Bonet, Brian I. O’Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano‐Silva, Marius van den Beek, Robert W. Williams, Robert M. Waterhouse, Adam M. Phillippy, Erich D. Jarvis, Michael C. Schatz, Anton Nekrutenko, Giulio Formenti - Nature Biotechnology 2024 被引用: 67
- Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA
著者: Boris Rebolledo‐Jaramillo, Marcia Shu‐Wei Su, Nicholas Stoler, Jennifer A. McElhoe, Benjamin Dickins, Daniel Blankenberg, Thorfinn Sand Korneliussen, Francesca Chiaromonte, Rasmus Nielsen, Mitchell M. Holland, Ian M. Paul, Anton Nekrutenko, Kateryna D. Makova - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 被引用: 264
- Practical Computational Reproducibility in the Life Sciences
著者: Björn Grüning, John Chilton, Johannes Köster, Ryan Dale, Nicola Soranzo, Marius van den Beek, Jeremy Goecks, Rolf Backofen, Anton Nekrutenko, James Taylor - Cell Systems 2018 被引用: 160
- Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists
著者: Daniel Blankenberg, Gregory Von Kuster, Nathaniel Coraor, Guruprasad Ananda, Ross Lazarus, Mary Mangan, Anton Nekrutenko, James Taylor - Current Protocols in Molecular Biology 2010 被引用: 1,457
- Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees
著者: Arslan A. Zaidi, Peter Wilton, Marcia Shu‐Wei Su, Ian M. Paul, Barbara Arbeithuber, Kate Anthony, Anton Nekrutenko, Rasmus Nielsen, Kateryna D. Makova - National Academy of Sciences, Proceedings of the National Academy of Sciences 2019 被引用: 114
- Next-generation sequencing data interpretation: enhancing reproducibility and accessibility
著者: Anton Nekrutenko, James Taylor - Nature Reviews Genetics 2012 被引用: 328
- Dissemination of scientific software with Galaxy ToolShed
著者: Daniel Blankenberg, Gregory Von Kuster, Emil Bouvier, Dannon Baker, Enis Afgan, Nicholas Stoler, Galaxy Team, James Taylor, Anton Nekrutenko - Genome biology 2014 被引用: 273
- The KA/KS Ratio Test for Assessing the Protein-Coding Potential of Genomic Regions: An Empirical and Simulation Study
著者: Anton Nekrutenko, Kateryna D. Makova, Wen‐Hsiung Li - Genome Research 2001 被引用: 334
- Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function
著者: Darren P. Martin, Spyros Lytras, Alexander G. Lucaci, Wolfgang Maier, Björn Grüning, Stephen D. Shank, Steven Weaver, Oscar A. MacLean, Richard Orton, Philippe Lemey, Maciej F. Boni, Houriiyah Tegally, Gordon W. Harkins, Cathrine Scheepers, Jinal N. Bhiman, Josie Everatt, Daniel G. Amoako, James Emmanuel San, Jennifer Giandhari, Alex Sigal, Carolyn Williamson, Marvin Hsiao, Anne von Gottberg, Arné de Klerk, Robert W. Shafer, David L. Robertson, Robert J. Wilkinson, B.T. Sewell, Richard Lessells, Anton Nekrutenko, Allison J. Greaney, Tyler N. Starr, Jesse D. Bloom, Ben Murrell, Eduan Wilkinson, Ravindra K. Gupta, Túlio de Oliveira, Sergei L. Kosakovsky Pond - Molecular Biology and Evolution 2022 被引用: 123
- 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
著者: Webb Miller, Kate R. Rosenbloom, Ross C. Hardison, Minmei Hou, James Taylor, Brian J. Raney, Richard Burhans, David King, Robert Baertsch, Daniel Blankenberg, Sergei L. Kosakovsky Pond, Anton Nekrutenko, Belinda Giardine, Robert S. Harris, Svitlana Tyekucheva, Mark Diekhans, Thomas H. Pringle, William J. Murphy, Arthur M. Lesk, George M. Weinstock, Kerstin Lindblad‐Toh, Richard A. Gibbs, Eric S. Lander, Adam Siepel, David Haussler, W. James Kent - Genome Research 2007 被引用: 287
- Predicting runtimes of bioinformatics tools based on historical data: five years of Galaxy usage
著者: Anastasia Tyryshkina, Nate Coraor, Anton Nekrutenko - Bioinformatics, Bioinform. 2019 被引用: 20
