Kasper D. Hansen
1969–2025 年に発表
- 70
- 論文数
- 24,161
- 被引用数
- 51
- h 指数
- 68
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology64.8%
- Medicine19.5%
- Neuroscience3.5%
- Immunology and Microbiology3.2%
- Agricultural and Biological Sciences2.6%
- Environmental Science1.8%
- その他4.6%
トピック
- Epigenetics and DNA Methylation12%
- RNA modifications and cancer4.3%
- Genomics and Chromatin Dynamics3.1%
- Gene expression and cancer classification3%
- Genomics and Phylogenetic Studies2.8%
- Single-cell and spatial transcriptomics2.6%
- その他72.2%
共著者
- Andrew P. Feinberg12
- Ben Langmead10
- Hans T. Björnsson9
- Leandros Boukas9
- Rafael A. Irizarry9
- Jeffrey T. Leek8
- Loyal A. Goff7
- Abhinav Nellore5
- Andrew E. Jaffe5
- Jean-Philippe Fortin5
- Levi Waldron5
- Martin Morgan5
- Shijie Zheng5
- Christine Ladd‐Acosta4
- Li Zhang4
- Sandrine Dudoit4
- Stephanie C. Hicks4
- Vincent J. Carey4
- Adrian Idrizi3
- Genevieve Stein-O’Brien3
- Giovanni A. Carosso3
- Héctor Corrada Bravo3
- Leonardo Collado‐Torres3
- M. Daniele Fallin3
全論文
- Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
著者: Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry - Bioinformatics, Bioinform. 1969 被引用: 4,845
- Orchestrating high-throughput genomic analysis with Bioconductor
著者: Wolfgang Huber, Vincent J. Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S. Carvalho, Héctor Corrada Bravo, Sean Davis, Laurent Gatto, Thomas Girke, Raphaël Gottardo, Florian Hahne, Kasper D. Hansen, Rafael A. Irizarry, Michael Lawrence, Michael I. Love, James W. MacDonald, Valerie Obenchain, Andrzej K. Oleś, Hervé Pagès, Alejandro Reyes, Paul Shannon, Gordon K. Smyth, Dan Tenenbaum, Levi Waldron, Martin Morgan - Nature Methods 2015 被引用: 3,988
- Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi
著者: Jean-Philippe Fortin, Timothy Triche, Kasper D. Hansen - Bioinformatics, Bioinform. 2016 被引用: 931
- Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
著者: James H. Bullard, Elizabeth Purdom, Kasper D. Hansen, Sandrine Dudoit - BMC Bioinformatics, BMC Bioinform. 2010 被引用: 1,786
- BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
著者: Kasper D. Hansen, Ben Langmead, Rafael A. Irizarry - Genome biology 2012 被引用: 905
- Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing
著者: Isac Lee, Roham Razaghi, Timothy Gilpatrick, Michael M. Molnar, Ariel Gershman, Norah Sadowski, Fritz J. Sedlazeck, Kasper D. Hansen, Jared T. Simpson, Winston Timp - Nature Methods 2020 被引用: 245
- Removing technical variability in RNA-seq data using conditional quantile normalization
著者: Kasper D. Hansen, Rafael A. Irizarry, Zhijin Wu - Biostatistics 2012 被引用: 668
- A mammalian methylation array for profiling methylation levels at conserved sequences
著者: A Arneson, Amin Haghani, Michael J. Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu, Emily Maciejewski, M. Yao, Caesar Z. Li, Ake T. Lu, Marco Morselli, Liudmilla Rubbi, Bret Barnes, Kasper D. Hansen, Wanding Zhou, Charles E. Breeze, Jason Ernst, Steve Horvath - Nature Communications 2022 被引用: 215
- Functional normalization of 450k methylation array data improves replication in large cancer studies
著者: Jean-Philippe Fortin, Aurélie Labbe, Mathieu Lemire, Brent W. Zanke, Thomas J. Hudson, Elana J. Fertig, Celia M.T. Greenwood, Kasper D. Hansen - Genome biology 2014 被引用: 1,009
- Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
著者: Michael C. Schatz, Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L. Grossman, Ira M. Hall, Kasper D. Hansen, Jonathan Lawson, Jeffrey T. Leek, Anne O’Donnell‐Luria, Stephen Mosher, Martin Morgan, Anton Nekrutenko, Brian D. O’Connor, Kevin Osborn, Benedict Paten, Candace Patterson, Frederick J. Tan, Casey Overby Taylor, Jennifer Vessio, Levi Waldron, Ting Wang, Kristin Wuichet, Alexander Baumann, Andrew Rula, Anton Kovalsy, C. Bernard, Derek Caetano-Anollés, Geraldine Van Der Auwera, Justin Canas, K. Ümit Yüksel, Kate Herman, Megan Taylor, Marianie Simeon, Michaël Baumann, Qi Wang, Robert Title, Ruchi Munshi, Sushma Chaluvadi, Valerie B Reeves, William Disman, Salin Thomas, Allie Hajian, Elizabeth Kiernan, Namrata Gupta, Trish Vosburg, Ludwig Geistlinger, Marcel Ramos, Sehyun Oh, Dave Rogers, Frances McDade, Mim Hastie, Nitesh Turaga, Alexander Ostrovsky, Alexandru Mahmoud, Dannon Baker, Dave Clements, Katherine E.L. Cox, Keith Suderman, Nataliya Kucher, Sergey Golitsynskiy, Samantha Zarate, Sarah J. Wheelan, Kai Kammers, Ana Stevens, Carolyn M. Hutter, Christopher Wellington, Elena M. Ghanaim, Ken Wiley, Shurjo K. Sen, Valentina Di Francesco, Deni s Yuen, Brian Walsh, Luke Sargent, Vahid Jalili, John Chilton, Lori Shepherd, Benjamin J. Stubbs, Ash O’Farrell, Benton A. Vizzier, Charles Overbeck, Charles Reid, David Steinberg, Elizabeth A. Sheets, Julian Lucas, Lon Blauvelt, Louise Cabansay, Noah Warren, Brian Hannafious, Tim Harris, Radhika Reddy, Eric S. Torstenson, M. Katie Banasiewicz, Haley Abel, Jason Walker - Cell Genomics 2022 被引用: 130
- Universal prediction of cell-cycle position using transfer learning
著者: Shijie Zheng, Genevieve Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana L. Winer, Gloria Shin, Hans T. Björnsson, Loyal A. Goff, Kasper D. Hansen - Genome biology 2022 被引用: 130
- Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
著者: Jean-Philippe Fortin, Kasper D. Hansen - Genome biology 2015 被引用: 370
- Increased methylation variation in epigenetic domains across cancer types
著者: Kasper D. Hansen, Winston Timp, Héctor Corrada Bravo, Sarven Sabunciyan, Ben Langmead, Oliver G. McDonald, Bo Wen, Hao Wu, Yun Liu, Dinh Diep, Eiríkur Briem, Kun Zhang, Rafael A. Irizarry, Andrew P. Feinberg - Nature Genetics 2011 被引用: 1,094
- Reproducible RNA-seq analysis using recount2
著者: Leonardo Collado‐Torres, Abhinav Nellore, Kai Kammers, Shannon Ellis, Margaret A. Taub, Kasper D. Hansen, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek - Nature Biotechnology 2017 被引用: 532
- Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates
著者: Shijie Zheng, Genevieve Stein-O’Brien, Leandros Boukas, Loyal A. Goff, Kasper D. Hansen - Genome biology 2023 被引用: 64
- Linear models enable powerful differential activity analysis in massively parallel reporter assays
著者: Leslie Myint, Dimitrios Avramopoulos, Loyal A. Goff, Kasper D. Hansen - BMC Genomics 2019 被引用: 464
- Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability
著者: Lindsay F. Rizzardi, Peter F. Hickey, Varenka Rodriguez DiBlasi, Rakel Tryggvadóttir, Colin M. Callahan, Adrian Idrizi, Kasper D. Hansen, Andrew P. Feinberg - Nature Neuroscience 2019 被引用: 166
- Bacterial infection remodels the DNA methylation landscape of human dendritic cells
著者: Alain Pacis, Ludovic Tailleux, Alexander M. Morin, John Lambourne, Julia L. MacIsaac, Vania Yotova, Anne Dumaine, Anne Danckaert, Francesca Luca, Jean‐Christophe Grenier, Kasper D. Hansen, Brigitte Gicquel, Miao Yu, Athma A. Pai, Chuan He, Jenny Tung, Tomi Pastinen, Michael S. Kobor, Roger Piqué-Regi, Yoav Gilad, Luis B. Barreiro - Genome Research 2015 被引用: 240
- Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing
著者: Michael J. Ziller, Kasper D. Hansen, Alexander Meissner, Martin J. Aryee - Nature Methods 2014 被引用: 329
- Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin
著者: Amy R. Vandiver, Rafael A. Irizarry, Kasper D. Hansen, Luis A. Garza, Árni Rafn Rúnarsson, Xin Li, Anna L. Chien, Timothy S. Wang, Sherry Leung, Sewon Kang, Andrew P. Feinberg - Genome Biology 2015 被引用: 156
- Software for the Integration of Multiomics Experiments in Bioconductor
著者: Marcel Ramos, Lucas Schiffer, Angela Re, Rimsha Azhar, Azfar Basunia, Carmen Rodrı́guez, Tiffany Chan, Phil Chapman, Sean Davis, David Gómez-Cabrero, Aedín C. Culhane, Benjamin Haibe‐Kains, Kasper D. Hansen, Hanish Kodali, Marie S. Louis, Arvind Singh Mer, Markus Riester, Martin Morgan, Vince Carey, Levi Waldron - Cancer Research 2017 被引用: 113
- Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver
著者: Xin Li, Yun Liu, Tal Salz, Kasper D. Hansen, Andrew P. Feinberg - Genome Research 2016 被引用: 138
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
著者: Kasper D. Hansen, Steven E. Brenner, Sandrine Dudoit - Nucleic Acids Research 2010 被引用: 755
- Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children
著者: Xiumei Hong, Ke Hao, Christine Ladd‐Acosta, Kasper D. Hansen, Hui‐Ju Tsai, Xin Liu, Xin Xu, Timothy A. Thornton, Deanna Caruso, Corinne Keet, Yifei Sun, Guoying Wang, Wei Luo, Rajesh Kumar, Ramsay Fuleihan, Anne Marie Singh, Jennifer S. Kim, Rachel E. Story, Ruchi S. Gupta, Peisong Gao, Zhu Chen, Sheila O. Walker, Tami R. Bartell, Terri H. Beaty, M. Daniele Fallin, Robert P. Schleimer, Patrick G. Holt, Kari C. Nadeau, Robert A. Wood, Jacqueline A. Pongracic, Daniel E. Weeks, Xiaobin Wang - Nature Communications 2015 被引用: 246
