Jason D. Lieb
1996–2020 年に発表
- 64
- 論文数
- 24,654
- 被引用数
- 64
- h 指数
- 64
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology80.5%
- Medicine8.5%
- Agricultural and Biological Sciences5%
- Immunology and Microbiology2.3%
- Neuroscience1.8%
- Computer Science0.4%
- その他1.5%
トピック
- Genomics and Chromatin Dynamics15.1%
- RNA Research and Splicing6.4%
- Epigenetics and DNA Methylation6.3%
- RNA and protein synthesis mechanisms4.2%
- RNA modifications and cancer4.2%
- CRISPR and Genetic Engineering2.9%
- その他60.9%
共著者
- Sevinç Ercan8
- Paul G. Giresi7
- Thea A. Egelhofer7
- Andreas Rechtsteiner6
- Jeremy M. Simon6
- Susan Strome6
- Andrea J. Gossett5
- Ewan Birney5
- Michael Buck5
- Anshul Kundaje4
- Barbara J Meyer4
- Brian D. Strahl4
- Bum-Kyu Lee4
- Desiree Tillo4
- Eran Segal4
- Gregory E. Crawford4
- Irene K. Moore4
- Jonathan Widom4
- Kohta Ikegami4
- Lingyun Song4
- N. Kaplan4
- Neil D. Clarke4
- Piotr A. Mieczkowski4
- Tao Liu4
全論文
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
著者: Stephen G. Landt, Georgi K. Marinov, Anshul Kundaje, Pouya Kheradpour, Florencia Pauli, Serafim Batzoglou, B Bernstein, Peter J. Bickel, James B. Brown, Philip Cayting, Yiwen Chen, Gilberto DeSalvo, Charles B. Epstein, Katherine Fisher-Aylor, Ghia Euskirchen, Mark Gerstein, Jason Gertz, Alexander J. Hartemink, Michael M. Hoffman, Vishwanath R. Iyer, Youngsook L. Jung, Subhradip Karmakar, Manolis Kellis, Peter V. Kharchenko, Qunhua Li, Tao Liu, X. Shirley Liu, Lijia Ma, Aleksandar Milosavljevic, R Myers, Peter J. Park, Michael J. Pazin, Marc D. Perry, Debasish Raha, Timothy E. Reddy, Joel Rozowsky, Noam Shoresh, Arend Sidow, Matthew Slattery, J Stamatoyannopoulos, Michael Tolstorukov, Kevin P. White, Simon Xi, Peggy Farnham, Jason D. Lieb, B Wold, M Snyder - Genome Research 2012 被引用: 2,223
- The accessible chromatin landscape of the human genome
著者: Robert E. Thurman, Eric Rynes, Richard Humbert, Jeff Vierstra, Matthew T. Maurano, Eric Haugen, Nathan C. Sheffield, Andrew B. Stergachis, Hao Wang, Benjamin Vernot, Kavita S. Garg, Sam John, Richard Sandstrom, Daniel Bates, Lisa Boatman, Theresa K. Canfield, Morgan Diegel, Douglas Dunn, Abigail K. Ebersol, Tristan Frum, Erika Giste, Audra Johnson, Ericka M. Johnson, Tanya Kutyavin, Bryan R. Lajoie, Bum-Kyu Lee, Kristen Lee, Darin London, Dimitra M. Lotakis, Shane Neph, Fidencio Neri, Éric Nguyen, Hongzhu Qu, Alex Reynolds, Vaughn Roach, Alexias Safi, Minerva E. Sanchez, Amartya Sanyal, Anthony Shafer, Jeremy M. Simon, Lingyun Song, Shinny Vong, Molly Weaver, Yongqi Yan, Zhancheng Zhang, Zhuzhu Zhang, Boris Lenhard, Muneesh Tewari, Michael O. Dorschner, R. Scott Hansen, Patrick A. Navas, George Stamatoyannopoulos, Vishwanath R. Iyer, Jason D. Lieb, Shamil Sunyaev, Joshua M. Akey, Peter J. Sabo, Rajinder Kaul, Terrence S. Furey, Job Dekker, Gregory E. Crawford, J Stamatoyannopoulos - Nature 2012 被引用: 2,935
- What are super-enhancers?
著者: Sebastian Pott, Jason D. Lieb - Nature Genetics 2014 被引用: 829
- Phosphorylated Lamin A/C in the Nuclear Interior Binds Active Enhancers Associated with Abnormal Transcription in Progeria
著者: Kohta Ikegami, Stefano Secchia, Omar Almakki, Jason D. Lieb, Ivan P. Moskowitz - Developmental Cell 2020 被引用: 116
- Cisplatin DNA damage and repair maps of the human genome at single-nucleotide resolution
著者: Jinchuan Hu, Jason D. Lieb, Aziz Sancar, Sheera Adar - National Academy of Sciences, Proceedings of the National Academy of Sciences 2016 被引用: 198
- An integrated encyclopedia of DNA elements in the human genome
著者: Ian Dunham, Anshul Kundaje, Shelley Force Aldred, Patrick Collins, Carrie Davis, Francis Doyle, Charles B. Epstein, Seth Frietze, Jennifer Harrow, Rajinder Kaul, Jainab Khatun, Bryan R. Lajoie, Stephen G. Landt, Bumkyu Lee, Florencia Pauli, Kate R. Rosenbloom, Peter J. Sabo, Alexias Safi, Amartya Sanyal, Noam Shoresh, Jeremy M. Simon, Lingyun Song, Nathan D. Trinklein, Robert C. Altshuler, Ewan Birney, James B. Brown, Chao Cheng, Sarah Djebali, Xianjun Dong, Jason Ernst, Terrence S. Furey, Mark Gerstein, Belinda Giardine, Melissa C. Greven, Ross C. Hardison, Robert S. Harris, Javier Herrero, Michael M. Hoffman, Sowmya Iyer, Manolis Kellis, Pouya Kheradpour, Timo Lassmann, Qunhua Li, Xin-Ying Lin, Georgi K. Marinov, Angelika Merkel, A Mortazavi, Stephen C.J. Parker, Timothy E. Reddy, Joel Rozowsky, Felix Schlesinger, Robert E. Thurman, Jie Wang, Lucas D. Ward, Troy W. Whitfield, Steven P. Wilder, Wei-Sheng Wu, Hualin Simon Xi, Kevin Y. Yip, Jiali Zhuang, B Bernstein, Eric D. Green, Chris Gunter, M Snyder, Michael J. Pazin, Rebecca F. Lowdon, Laura A. L. Dillon, Leslie B. Adams, Caroline J. Kelly, Julia Zhang, Judith R. Wexler, Peter J. Good, Elise A. Feingold, Gregory E. Crawford, Job Dekker, Laura Elnitski, Peggy Farnham, Morgan C. Giddings, T Gingeras, Roderic Guigó, Timothy J. Hubbard, W. James Kent, Jason D. Lieb, Elliott H. Margulies, R Myers, J Stamatoyannopoulos, Scott A. Tenenbaum, Zhiping Weng, Kevin P. White, B Wold, Yanbao Yu, John A. Wrobel, Brian A. Risk, Harsha P. Gunawardena, Heather Kuiper, Christopher Maier, Ling Xie, Xian Chen, Tarjei S. Mikkelsen, Shawn Gillespie ほか 343 名 - 2012 被引用: 2,783
- The DNA-encoded nucleosome organization of a eukaryotic genome
著者: N. Kaplan, Irene K. Moore, Yvonne Fondufe‐Mittendorf, Andrea J. Gossett, Desiree Tillo, Yair Field, Emily M LeProust, Timothy R. Hughes, Jason D. Lieb, Jonathan Widom, Eran Segal - Nature 2008 被引用: 1,250
- Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution
著者: Jinchuan Hu, Sheera Adar, Christopher P. Selby, Jason D. Lieb, Aziz Sancar - Genes & Development 2015 被引用: 262
- Comparative analysis of metazoan chromatin organization Open
著者: Joshua W. K. Ho, Youngsook L. Jung, Tao Liu, B. Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Tolstorukov, Alex Appert, Stephen C.J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Shengen Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Dong Yan, Andrea C. Dosé, Xikun Duan, Charles B. Epstein, Sevinç Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemysław Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, B Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William Stafford Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park - Nature, Nat. 2014 被引用: 449
- Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis
著者: Sheera Adar, Jinchuan Hu, Jason D. Lieb, Aziz Sancar - National Academy of Sciences, Proceedings of the National Academy of Sciences 2016 被引用: 189
- A Transcriptional Lineage of the Early C. elegans Embryo
著者: Sophia Tintori, Erin Osborne Nishimura, Patrick Golden, Jason D. Lieb, Bob Goldstein - Developmental Cell 2016 被引用: 169
- Defining functional DNA elements in the human genome
著者: Manolis Kellis, B Wold, M Snyder, B Bernstein, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward, Ewan Birney, Gregory E. Crawford, Job Dekker, Ian Dunham, Laura Elnitski, Peggy Farnham, Elise A. Feingold, Mark Gerstein, Morgan C. Giddings, David M. Gilbert, T Gingeras, Eric D. Green, Roderic Guigó, Tim Hubbard, Jim Kent, Jason D. Lieb, R Myers, Michael J. Pazin, Bing Ren, J Stamatoyannopoulos, Zhiping Weng, Kevin P. White, Ross C. Hardison - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 被引用: 749
- Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
著者: Katharine N. Schulz, Eliana R. Bondra, Arbel Moshe, Jacqueline E. Villalta, Jason D. Lieb, Tommy Kaplan, Daniel J. McKay, Melissa M. Harrison - Genome Research 2015 被引用: 200
- Unlocking the secrets of the genome
著者: S Celniker, Laura A. L. Dillon, Mark Gerstein, Kristin C. Gunsalus, Steven Henikoff, Gary H. Karpen, Manolis Kellis, Eric C. Lai, Jason D. Lieb, David M. MacAlpine, Gos Micklem, Fabio Piano, M Snyder, Lincoln Stein, Kevin P. White, R Waterston - Nature 2009 被引用: 822
- Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy
著者: Vincent J. Lynch, Mauris C. Nnamani, Aurélie Kapusta, Kathryn J. Brayer, Silvia Leonor Olivera, Erik C. Mazur, Deena Emera, Shehzad Z. Sheikh, Frank Grützner, Stefan Bauersachs, Alexander Graf, Steven L. Young, Jason D. Lieb, Francesco J. DeMayo, Cédric Feschotte, Günter P. Wagner - Cell Reports 2015 被引用: 279
- Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
著者: Jeremy M. Simon, Paul G. Giresi, Ian J. Davis, Jason D. Lieb - Nature Protocols 2012 被引用: 331
- Single-cell ATAC-seq: strength in numbers
著者: Sebastian Pott, Jason D. Lieb - Genome biology 2015 被引用: 87
- Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster
著者: Xinxian Deng, Joseph Hiatt, Di Kim Nguyen, Sevinç Ercan, David Sturgill, LaDeana W. Hillier, Felix Schlesinger, Carrie Davis, V Reinke, T Gingeras, Jay Shendure, R Waterston, Brian Oliver, Jason D. Lieb, Christine M. Distèche - Nature Genetics 2011 被引用: 313
- Evidence for nucleosome depletion at active regulatory regions genome-wide
著者: Cheol‐Koo Lee, Yoichiro Shibata, Bhargavi Rao, Brian D. Strahl, Jason D. Lieb - Nature Genetics 2004 被引用: 746
- An assessment of histone-modification antibody quality
著者: Thea A. Egelhofer, Aki Minoda, Sarit Klugman, Kyungjoon Lee, Paulina Kolasinska-Zwierz, Artyom A. Alekseyenko, Ming-Sin Cheung, Daniel S. Day, Sarah Gadel, Andrey A. Gorchakov, Tingting Gu, Peter V. Kharchenko, Samantha Kuan, Isabel Latorre, Daniela Linder-Basso, Ying Luu, Queminh Ngo, Marc D. Perry, Andreas Rechtsteiner, Nicole C. Riddle, Yuri B. Schwartz, Gregory Shanower, Anne Vielle, Julie Ahringer, Sarah C. R. Elgin, Mitzi I. Kuroda, Vincenzo Pirrotta, Bing Ren, Susan Strome, Peter J. Park, Gary H. Karpen, R. David Hawkins, Jason D. Lieb - Nature Structural & Molecular Biology 2010 被引用: 444
- Interrogating the Function of Metazoan Histones using Engineered Gene Clusters
著者: Daniel J. McKay, Stephen Klusza, Taylor J.R. Penke, Michael P. Meers, Kaitlin P. Curry, Stephen L. McDaniel, Pamela Y. Malek, Stephen W. Cooper, Deirdre C. Tatomer, Jason D. Lieb, Brian D. Strahl, Robert J. Duronio, A. Gregory Matera - Developmental Cell 2015 被引用: 191
- Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
著者: Bum-Kyu Lee, Akshay Bhinge, Anna Battenhouse, Ryan M. McDaniell, Zheng Liu, Lingyun Song, Yunyun Ni, Ewan Birney, Jason D. Lieb, Terrence S. Furey, Gregory E. Crawford, Vishwanath R. Iyer - Genome Research 2011 被引用: 149
- A map of open chromatin in human pancreatic islets
著者: Kyle J. Gaulton, Takao Nammo, Lorenzo Pasquali, Jeremy M. Simon, Paul G. Giresi, Marie P. Fogarty, Tami M. Panhuis, Piotr A. Mieczkowski, Antonio Secchi, Domenico Bosco, Thierry Berney, Eduard Montanya, Karen L. Mohlke, Jason D. Lieb, Jorge Ferrer - Nature Genetics 2010 被引用: 553
- Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
著者: Lingyun Song, Zhancheng Zhang, Linda L. Grasfeder, Alan P. Boyle, Paul G. Giresi, Bum-Kyu Lee, Nathan C. Sheffield, Stefan Gräf, Mikael Huss, Damian Keefe, Zheng Liu, Darin London, Ryan M. McDaniell, Yoichiro Shibata, Kimberly A. Showers, Jeremy M. Simon, Teresa R. Vales, Tianyuan Wang, Deborah R. Winter, Zhuzhu Zhang, Neil D. Clarke, Ewan Birney, Vishwanath R. Iyer, Gregory E. Crawford, Jason D. Lieb, Terrence S. Furey - Genome Research 2011 被引用: 526
