Jianyi Yang
2003–2026 年に発表
- 170
- 論文数
- 20,434
- 被引用数
- 42
- h 指数
- 81
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology50.2%
- Computer Science16.1%
- Medicine12.3%
- Immunology and Microbiology4.2%
- Agricultural and Biological Sciences3.9%
- Materials Science2.7%
- その他10.6%
トピック
- Protein Structure and Dynamics8.6%
- Computational Drug Discovery Methods6.6%
- Machine Learning in Bioinformatics5.1%
- RNA and protein synthesis mechanisms4.6%
- vaccines and immunoinformatics approaches2.5%
- Enzyme Structure and Function2.3%
- その他70.3%
共著者
全論文
- The I-TASSER Suite: protein structure and function prediction
著者: Jianyi Yang, Renxiang Yan, Ambrish Roy, Dong Xu, Jonathan Poisson, Yang Zhang - Nature Methods 2014 被引用: 5,909
- The trRosetta server for fast and accurate protein structure prediction
著者: Zongyang Du, Hong Su, Wenkai Wang, Lisha Ye, Hong Wei, Zhenling Peng, Ivan Anishchenko, David Baker, Jianyi Yang - Nature Protocols 2021 被引用: 728
- Improved protein structure prediction using predicted interresidue orientations
著者: Jianyi Yang, Ivan Anishchenko, Hahnbeom Park, Zhenling Peng, Sergey Ovchinnikov, David Baker - National Academy of Sciences, Proceedings of the National Academy of Sciences 2020 被引用: 1,558
- I-TASSER server: new development for protein structure and function predictions
著者: Jianyi Yang, Yang Zhang - Nucleic Acids Research, Nucleic Acids Res. 2015 被引用: 2,662
- Making AI Less "Thirsty": Uncovering and Addressing the Secret Water Footprint of AI Models
著者: Pengfei Li, Jianyi Yang, Mohammad A. Islam, Shaolei Ren - arXiv (Cornell University), CoRR 2023 被引用: 158
- PotentialNet for Molecular Property Prediction
著者: Evan N. Feinberg, Debnil Sur, Zhenqin Wu, Brooke E. Husic, Huanghao Mai, Yang Li, Saisai Sun, Jianyi Yang, Bharath Ramsundar, Vijay S. Pande - ACS Central Science 2018 被引用: 516
- BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions
著者: Jianyi Yang, Ambrish Roy, Yang Zhang - Nucleic Acids Research, Nucleic Acids Res. 2012 被引用: 815
- trRosettaRNA: automated prediction of RNA 3D structure with transformer network
著者: Wenkai Wang, Chenjie Feng, Renmin Han, Ziyi Wang, Lisha Ye, Zongyang Du, Hong Wei, Fa Zhang, Zhenling Peng, Jianyi Yang - Nature Communications 2023 被引用: 205
- Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment
著者: Jianyi Yang, Ambrish Roy, Yang Zhang - Bioinformatics, Bioinform. 2013 被引用: 1,073
- Making AI Less 'Thirsty'
著者: Pengfei Li, Jianyi Yang, Mohammad A. Islam, Shaolei Ren - Communications of the ACM, Commun. ACM 2025 被引用: 99
- COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking
著者: Qi Wu, Zhenling Peng, Yang Zhang, Jianyi Yang - Nucleic Acids Research, Nucleic Acids Res. 2018 被引用: 303
- PLMSearch: Protein language model powers accurate and fast sequence search for remote homology
著者: Wei Liu, Ziye Wang, Ronghui You, Chenghan Xie, Hong Wei, Yi Xiong, Jianyi Yang, Shanfeng Zhu - Nature Communications 2024 被引用: 86
- Recognition of small molecule-RNA binding sites using RNA sequence and structure
著者: Hong Su, Zhenling Peng, Jianyi Yang - Bioinformatics, Bioinform. 2020 被引用: 73
- GLASS: a comprehensive database for experimentally validated GPCR-ligand associations
著者: Wallace K. B. Chan, Hongjiu Zhang, Jianyi Yang, Jeffrey R. Brender, Junguk Hur, Arzucan Özgür, Yang Zhang - Bioinformatics, Bioinform. 2015 被引用: 149
- COFACTOR: an accurate comparative algorithm for structure-based protein function annotation
著者: Ambrish Roy, Jianyi Yang, Yang Zhang - Nucleic Acids Research, Nucleic Acids Res. 2012 被引用: 731
- mTM-align: an algorithm for fast and accurate multiple protein structure alignment
著者: Runze Dong, Zhenling Peng, Yang Zhang, Jianyi Yang - Bioinformatics, Bioinform. 2017 被引用: 157
- Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method
著者: Zijuan Zhao, Zhenling Peng, Jianyi Yang - Journal of Chemical Information and Modeling, J. Chem. Inf. Model. 2018 被引用: 73
- Protein Structure and Function Prediction Using I‐TASSER
著者: Jianyi Yang, Yang Zhang - Current Protocols in Bioinformatics 2015 被引用: 574
- Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods
著者: Hong Su, Mengchen Liu, Saisai Sun, Zhenling Peng, Jianyi Yang - Bioinformatics, Bioinform. 2018 被引用: 101
- SARS-CoV-2 nucleocapsid protein binds host mRNAs and attenuates stress granules to impair host stress response
著者: Syed Nabeel‐Shah, Hyunmin Lee, Nujhat Ahmed, Giovanni L. Burke, Shaghayegh Farhangmehr, Kanwal Ashraf, Shuye Pu, Ulrich Braunschweig, Guoqing Zhong, Hong Wei, Hua Tang, Jianyi Yang, Edyta Marcon, Benjamin J. Blencowe, Zhaolei Zhang, Jack Greenblatt - iScience 2021 被引用: 124
- Structural and Sequence Similarity Makes a Significant Impact on Machine-Learning-Based Scoring Functions for Protein-Ligand Interactions
著者: Yang Li, Jianyi Yang - Journal of Chemical Information and Modeling, J. Chem. Inf. Model. 2017 被引用: 102
- Electrically programmable phase-change photonic memory for optical neural networks with nanoseconds in situ training capability
著者: Maoliang Wei, Junying Li, Zequn Chen, Bo Tang, Zhiqi Jia, Peng Zhang, Kunhao Lei, Kai Xu, Jianghong Wu, Chuyu Zhong, Hui Ma, Yuting Ye, Jialing Jian, Chunlei Sun, Ruonan Liu, Ying Sun, Wei E. I. Sha, Xiaoyong Hu, Jianyi Yang, Lan Li, Hongtao Lin - Advanced Photonics 2023 被引用: 90
- RNA-Puzzles Round V: blind predictions of 23 RNA structures
著者: Fan Bu, Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa R. H. de Aquino, Nagendar Goud Badepally, Robert Batey, Eugene F. Baulin, Paweł Boiński, M. Boniecki, Janusz M. Bujnicki, Kristy A. Carpenter, Jose Chacon, Shi‐Jie Chen, Wah Chiu, Pablo Cordero, Naba Krishna Das, Rhiju Das, Wayne Dawson, Frank DiMaio, Feng Ding, Anne-Catherine Dock-Bregeon, Nikolay V. Dokholyan, Ron O. Dror, Stanisław Dunin-Horkawicz, Stephan Eismann, Eric Ennifar, Reza Esmaeeli, Masoud Amiri Farsani, A.R. Ferré-D′Amaré, Caleb Geniesse, George E. Ghanim, Horacio V. Guzman, Iris V. Hood, Lin Huang, Dharm Skandh Jain, Farhang Jaryani, Lei Jin, Astha Joshi, Masha Karelina, Jeffrey S. Kieft, Wipapat Kladwang, Sebastian Kmiecik, Deepak Koirala, Markus Kollmann, Rachael C. Kretsch, Mateusz Kurciński, Jun Li, Shuang Li, Marcin Magnus, Benoı̂t Masquida, S Naeim Moafinejad, Arup Mondal, Sunandan Mukherjee, Thi Hoang Duong Nguyen, Grigory I. Nikolaev, Chandran Nithin, Nye G, Iswarya P. N. Pandaranadar Jeyeram, Alberto Pérez, Phillip Pham, Joseph A. Piccirilli, Smita P. Pilla, Radosław Pluta, Simón Poblete, Almudena Ponce-Salvatierra, Mariusz Popenda, Łukasz Popenda, Fabrizio Pucci, Ramya Rangan, Angana Ray, Aiming Ren, Joanna Sarzyńska, Congzhou M. Sha, Filip Stefaniak, Zhaoming Su, Krishna C. Suddala, Marta Szachniuk, Raphael J.L. Townshend, Robert J. Trachman, Jian Wang, Wenkai Wang, Andrew M. Watkins, Tomasz Wirecki, Yi Xiao, Peng Xiong, Yiduo Xiong, Jianyi Yang, Joseph D. Yesselman, Jinwei Zhang, Yi Zhang, Zhenzhen Zhang, Yuanzhe Zhou, Tomasz Żok, Dong Zhang, Sicheng Zhang, Adriana Żyła, Éric Westhof, Zhichao Miao - Nature Methods 2024 被引用: 64
- RNALigands: a database and web server for RNA–ligand interactions
著者: Saisai Sun, Jianyi Yang, Zhaolei Zhang - RNA 2021 被引用: 38
