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Rhiju Das

2001–2025 年に発表

131
論文数
21,052
被引用数
70
h 指数
127
i10 指数

被引用数

Rhiju Das の年別被引用数1905 年: 被引用 1 件1952 年: 被引用 1 件1986 年: 被引用 1 件1989 年: 被引用 1 件1992 年: 被引用 1 件1996 年: 被引用 1 件1997 年: 被引用 1 件1999 年: 被引用 3 件2000 年: 被引用 1 件2001 年: 被引用 4 件2002 年: 被引用 2 件2003 年: 被引用 5 件2004 年: 被引用 5 件2005 年: 被引用 25 件2006 年: 被引用 23 件2007 年: 被引用 40 件2008 年: 被引用 86 件2009 年: 被引用 105 件2010 年: 被引用 137 件2011 年: 被引用 176 件2012 年: 被引用 168 件2013 年: 被引用 195 件2014 年: 被引用 187 件2015 年: 被引用 260 件2016 年: 被引用 229 件2017 年: 被引用 271 件2018 年: 被引用 246 件2019 年: 被引用 633 件2020 年: 被引用 955 件2021 年: 被引用 1,019 件2022 年: 被引用 927 件2023 年: 被引用 898 件2024 年: 被引用 1,280 件2025 年: 被引用 762 件2026 年: 被引用 65 件1906〜1951 年は被引用が無いため表示していません1953〜1985 年は被引用が無いため表示していません1987〜1988 年は被引用が無いため表示していません1990〜1991 年は被引用が無いため表示していません1993〜1995 年は被引用が無いため表示していません1998 年は被引用が無いため表示していません

引用元

国・地域

この著者を引用した国・地域の世界地図アメリカ合衆国: 引用元論文 3,260 件、この内訳の 35.9%中国: 引用元論文 982 件、この内訳の 10.8%ドイツ: 引用元論文 591 件、この内訳の 6.5%イギリス: 引用元論文 564 件、この内訳の 6.2%フランス: 引用元論文 351 件、この内訳の 3.9%カナダ: 引用元論文 269 件、この内訳の 3%スイス: 引用元論文 241 件、この内訳の 2.6%イタリア: 引用元論文 189 件、この内訳の 2.1%日本: 引用元論文 186 件、この内訳の 2%スペイン: 引用元論文 173 件、この内訳の 1.9%オランダ: 引用元論文 164 件、この内訳の 1.8%ポーランド: 引用元論文 156 件、この内訳の 1.7%
0%35.9%その他 21.6%

機関

分野

  • Biochemistry, Genetics and Molecular Biology71.2%
  • Medicine12%
  • Computer Science4.5%
  • Materials Science2.6%
  • Immunology and Microbiology2%
  • Chemistry1.5%
  • その他6.2%

トピック

  • RNA and protein synthesis mechanisms12.9%
  • Protein Structure and Dynamics8.2%
  • RNA modifications and cancer6.5%
  • RNA Research and Splicing6.4%
  • Enzyme Structure and Function4%
  • Computational Drug Discovery Methods2.6%
  • その他59.4%

共著者

全論文

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  1. The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design

    著者: Rebecca F. Alford, Andrew Leaver‐Fay, Jeliazko R. Jeliazkov, Matthew J. O’Meara, Frank DiMaio, Hahnbeom Park, Maxim V. Shapovalov, P. Douglas Renfrew, Vikram Khipple Mulligan, Kalli Kappel, Jason W. Labonte, Michael S. Pacella, Richard Bonneau, Philip Bradley, Roland L. Dunbrack, Rhiju Das, David Baker, Brian Kuhlman, Tanja Kortemme, Jeffrey J. Gray - Journal of Chemical Theory and Computation 2017 被引用: 1,570

  2. Macromolecular modeling and design in Rosetta: recent methods and frameworks

    著者: Julia Koehler Leman, Brian D. Weitzner, Steven M. Lewis, Jared Adolf‐Bryfogle, Nawsad Alam, Rebecca F. Alford, Melanie L. Aprahamian, David Baker, Kyle A. Barlow, Patrick Barth, Benjamin Basanta, Brian J. Bender, Kristin Blacklock, Jaume Bonet, Scott E. Boyken, Phil Bradley, Chris Bystroff, Patrick Conway, Seth Cooper, Bruno E. Correia, Brian Coventry, Rhiju Das, René M. de Jong, Frank DiMaio, Lorna Dsilva, Roland L. Dunbrack, Alexander S. Ford, Brandon Frenz, Darwin Fu, Caleb Geniesse, Lukasz Goldschmidt, Ragul Gowthaman, Jeffrey J. Gray, Dominik Gront, Sharon L. Guffy, Scott Horowitz, Po‐Ssu Huang, Thomas Huber, Timothy M. Jacobs, Jeliazko R. Jeliazkov, David K. Johnson, Kalli Kappel, John Karanicolas, Hamed Khakzad, Karen R. Khar, Sagar D. Khare, Firas Khatib, Alisa Khramushin, Indigo C. King, Robert Kleffner, Brian Koepnick, Tanja Kortemme, Georg Kuenze, Brian Kuhlman, Daisuke Kuroda, Jason W. Labonte, Jason Lai, Gideon Lapidoth, Andrew Leaver‐Fay, Steffen Lindert, Thomas W. Linsky, Nir London, Joseph H. Lubin, Sergey Lyskov, Jack B. Maguire, Lars Malmström, Enrique Marcos, Orly Marcu, Nicholas Marze, Jens Meiler, Rocco Moretti, Vikram Khipple Mulligan, Santrupti Nerli, Christoffer Norn, Shane Ó’Conchúir, Noah Ollikainen, Sergey Ovchinnikov, Michael S. Pacella, Xingjie Pan, Hahnbeom Park, Ryan E. Pavlovicz, Manasi A. Pethe, Brian G. Pierce, Kala Bharath Pilla, Barak Raveh, P. Douglas Renfrew, Shourya S. Roy Burman, Aliza B. Rubenstein, Marion F. Sauer, Andreas Scheck, William R. Schief, Ora Schueler‐Furman, Yuval Sedan, Alexander M. Sevy, Nikolaos G. Sgourakis, Lei Shi, Justin B. Siegel, Daniel‐Adriano Silva, Shannon T. Smith, Yifan Song ほか 8 名 - Nature Methods 2020 被引用: 923

  3. Functional 5′ UTR mRNA structures in eukaryotic translation regulation and how to find them

    著者: Kathrin Leppek, Rhiju Das, Maria Barna - Nature Reviews Molecular Cell Biology 2017 被引用: 974

  4. Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics

    著者: Kathrin Leppek, Gun Woo Byeon, Wipapat Kladwang, Hannah K. Wayment-Steele, Craig H. Kerr, Adele Xu, Do Soon Kim, Ved V. Topkar, Christian A. Choe, Daphna Rothschild, Gerald C. Tiu, Roger Wellington-Oguri, Kotaro Fujii, Eesha Sharma, Andrew M. Watkins, John J. Nicol, Jonathan Romano, Bojan Tunguz, Fernando Dı́az, Hui Cai, Pengbo Guo, Jiewei Wu, Fanyu Meng, Shuai Shi, Eterna Participants, Philip R. Dormitzer, Alicia Solórzano, Maria Barna, Rhiju Das - Nature Communications 2022 被引用: 388

  5. Rosetta3

    著者: Andrew Leaver‐Fay, Michael D. Tyka, Steven M. Lewis, Oliver F. Lange, James Thompson, Ron Jacak, Kristian W. Kaufman, P. Douglas Renfrew, Colin A. Smith, William Sheffler, Ian Davis, Seth Cooper, Adrien Treuille, Daniel J. Mandell, Florian Richter, Yih‐En Andrew Ban, Sarel J. Fleishman, Jacob E. Corn, David E. Kim, Sergey Lyskov, Monica Berrondo, Stuart Mentzer, Zoran Popović, James J. Havranek, John Karanicolas, Rhiju Das, Jens Meiler, Tanja Kortemme, Jeffrey J. Gray, Brian Kuhlman, David Baker, Philip Bradley - Methods in enzymology on CD-ROM/Methods in enzymology 2010 被引用: 2,008

  6. Geometric deep learning of RNA structure

    著者: Raphael J.L. Townshend, Stephan Eismann, Andrew M. Watkins, Ramya Rangan, Masha Karelina, Rhiju Das, Ron O. Dror - Science 2021 被引用: 443

  7. Spontaneous driving forces give rise to protein−RNA condensates with coexisting phases and complex material properties

    著者: Steven Boeynaems, Alex S. Holehouse, Venera Weinhardt, Dénes Kovács, Joris Van Lindt, Carolyn A. Larabell, Ludo Van Den Bosch, Rhiju Das, Péter Tompa, Rohit V. Pappu, Aaron D. Gitler - National Academy of Sciences, Proceedings of the National Academy of Sciences 2019 被引用: 560

  8. Assessment of three‐dimensional RNA structure prediction in CASP15

    著者: Rhiju Das, Rachael C. Kretsch, Adam J. Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan, Fan Bu, Ronan M. Keegan, Maya Topf, Daniel J. Rigden, Zhichao Miao, Éric Westhof - Proteins Structure Function and Bioinformatics 2023 被引用: 152

  9. FARFAR2: Improved De Novo Rosetta Prediction of Complex Global RNA Folds

    著者: Andrew M. Watkins, Ramya Rangan, Rhiju Das - Structure 2020 被引用: 284

  10. RNA secondary structure packages evaluated and improved by high-throughput experiments

    著者: Hannah K. Wayment-Steele, Wipapat Kladwang, Alexandra I. Strom, Jeehyung Lee, Adrien Treuille, Alexander J. Becka, Eterna Participants, Rhiju Das - Nature Methods 2022 被引用: 136

  11. Macromolecular Modeling with Rosetta

    著者: Rhiju Das, David Baker - Annual Review of Biochemistry 2008 被引用: 1,021

  12. RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

    著者: Zhichao Miao, Ryszard W. Adamiak, Maciej Antczak, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen, Clarence Yu Cheng, Yi Cheng, Fang‐Chieh Chou, Rhiju Das, Nikolay V. Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, A. Krokhotin, Marcin Magnus, Olivier Mailhot, François Major, Thomas H. Mann, Paweł Piątkowski, Radosław Pluta, Mariusz Popenda, Joanna Sarzyńska, Lizhen Sun, Marta Szachniuk, Siqi Tian, Jian Wang, Jun Wang, Andrew M. Watkins, Jakub Wiedemann, Yi Xiao, Xiaojun Xu, Joseph D. Yesselman, Dong Zhang, Yi Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Żok, Adriana Żyła, Aiming Ren, Robert Batey, Barbara L. Golden, Lin Huang, David M.J. Lilley, Yijin Liu, Dinshaw J. Patel, Éric Westhof - RNA 2020 被引用: 172

  13. A unified mechanism for intron and exon definition and back-splicing

    著者: Xueni Li, Shiheng Liu, Lingdi Zhang, Aaron Issaian, Ryan C. Hill, Sara Espinosa, Shasha Shi, Yanxiang Cui, Kalli Kappel, Rhiju Das, Kirk C. Hansen, Zixuan Zhou, Rui Zhao - Nature 2019 被引用: 184

  14. Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome

    著者: Kaiming Zhang, Ivan N. Zheludev, Rachel J. Hagey, Raphael Haslecker, Yixuan J. Hou, Rachael C. Kretsch, Grigore Pintilie, Ramya Rangan, Wipapat Kladwang, Shanshan Li, Marie Teng-Pei Wu, Edward A. Pham, Claire Bernardin-Souibgui, Ralph S. Baric, Timothy P. Sheahan, Victoria D′Souza, Jeffrey S. Glenn, Wah Chiu, Rhiju Das - Nature Structural & Molecular Biology 2021 被引用: 171

  15. Understanding Nucleic Acid–Ion Interactions

    著者: Jan Lipfert, Sebastian Doniach, Rhiju Das, Daniel Herschlag - Annual Review of Biochemistry 2014 被引用: 498

  16. Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

    著者: Kalli Kappel, Kaiming Zhang, Zhaoming Su, Andrew M. Watkins, Wipapat Kladwang, Shanshan Li, Grigore Pintilie, Ved V. Topkar, Ramya Rangan, Ivan N. Zheludev, Joseph D. Yesselman, Wah Chiu, Rhiju Das - Nature Methods 2020 被引用: 190

  17. Structure of human telomerase holoenzyme with bound telomeric DNA

    著者: George E. Ghanim, Adam J. Fountain, Anne‐Marie M. van Roon, Ramya Rangan, Rhiju Das, Kathleen Collins, Thi Hoang Duong Nguyen - Nature 2021 被引用: 202

  18. Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

    著者: Sergey Lyskov, Fang‐Chieh Chou, Shane Ó Conchúir, Bryan S. Der, Kevin Drew, Daisuke Kuroda, Jianqing Xu, Brian D. Weitzner, P. Douglas Renfrew, Parin Sripakdeevong, Benjamin Borgo, James J. Havranek, Brian Kuhlman, Tanja Kortemme, Richard Bonneau, Jeffrey J. Gray, Rhiju Das - PLoS ONE 2013 被引用: 458

  19. RNA-Puzzles : A CASP-like evaluation of RNA three-dimensional structure prediction

    著者: José Almeida Cruz, Marc-Frédérick Blanchet, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen, Song Cao, Rhiju Das, Feng Ding, Nikolay V. Dokholyan, Samuel Coulbourn Flores, Lili Huang, Christopher A. Lavender, Véronique Lisi, François Major, Katarzyna Mikołajczak, Dinshaw J. Patel, Anna Philips, Tomasz Puton, John SantaLucia, Fredrick Sijenyi, Thomas Hermann, Kristian Rother, Magdalena B. Rother, Alexander Serganov, Marcin Skorupski, Tomasz Sołtysiński, Parin Sripakdeevong, Irina Tuszyńska, Kevin M. Weeks, Christina Waldsich, Michael Wildauer, Neocles B. Leontis, Éric Westhof - RNA 2012 被引用: 312

  20. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

    著者: Zhichao Miao, Ryszard W. Adamiak, Maciej Antczak, Robert T. Batey, Alexander J. Becka, Marcin Biesiada, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen, Clarence Yu Cheng, Fang‐Chieh Chou, A.R. Ferré-D′Amaré, Rhiju Das, Wayne K. Dawson, Feng Ding, Nikolay V. Dokholyan, Stanisław Dunin-Horkawicz, Caleb Geniesse, Kalli Kappel, Wipapat Kladwang, A. Krokhotin, Grzegorz Łach, François Major, Thomas H. Mann, Marcin Magnus, Katarzyna Pachulska‐Wieczorek, Dinshaw J. Patel, Joseph A. Piccirilli, Mariusz Popenda, Katarzyna J. Purzycka, Aiming Ren, Greggory M. Rice, John SantaLucia, Joanna Sarzyńska, Marta Szachniuk, Arpit Tandon, J.J. Trausch, Siqi Tian, Jian Wang, Kevin M. Weeks, Benfeard Williams, Yi Xiao, Xiaojun Xu, Dong Zhang, Tomasz Żok, Éric Westhof - RNA 2017 被引用: 205

  21. RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look

    著者: Ramya Rangan, Ivan N. Zheludev, Rachel J. Hagey, Edward A. Pham, Hannah K. Wayment-Steele, Jeffrey S. Glenn, Rhiju Das - RNA 2020 被引用: 291

  22. Automated de novo prediction of native-like RNA tertiary structures

    著者: Rhiju Das, David Baker - National Academy of Sciences, Proceedings of the National Academy of Sciences 2007 被引用: 456

  23. RNA design rules from a massive open laboratory

    著者: Jeehyung Lee, Wipapat Kladwang, Min Jae Lee, Daniel Cantu, Martin Azizyan, Hanjoo Kim, Alex Limpaecher, Snehal Gaikwad, Sungroh Yoon, Adrien Treuille, Rhiju Das, EteRNA Participants - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 被引用: 320

  24. RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

    著者: Zhichao Miao, Ryszard W. Adamiak, Marc-Frédérick Blanchet, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen, Clarence Yu Cheng, Grzegorz Chojnowski, Fang‐Chieh Chou, Pablo Cordero, José Almeida Cruz, A.R. Ferré-D′Amaré, Rhiju Das, Feng Ding, Nikolay V. Dokholyan, Stanisław Dunin-Horkawicz, Wipapat Kladwang, A. Krokhotin, Grzegorz Łach, Marcin Magnus, François Major, Thomas H. Mann, Benoı̂t Masquida, Dorota Matelska, Mélanie Meyer, Alla Peselis, Mariusz Popenda, Katarzyna J. Purzycka, Alexander Serganov, Juliusz Stasiewicz, Marta Szachniuk, Arpit Tandon, Siqi Tian, Jian Wang, Yi Xiao, Xiaojun Xu, Jinwei Zhang, Peinan Zhao, Tomasz Żok, Éric Westhof - RNA 2015 被引用: 208