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Jeffrey J. Gray

1980–2026 年に発表

113
論文数
18,010
被引用数
63
h 指数
109
i10 指数

被引用数

Jeffrey J. Gray の年別被引用数1962 年: 被引用 2 件1980 年: 被引用 1 件1981 年: 被引用 3 件1982 年: 被引用 1 件1983 年: 被引用 1 件1984 年: 被引用 1 件1985 年: 被引用 1 件1986 年: 被引用 3 件1987 年: 被引用 3 件1988 年: 被引用 2 件1989 年: 被引用 4 件1990 年: 被引用 6 件1991 年: 被引用 15 件1992 年: 被引用 11 件1993 年: 被引用 16 件1994 年: 被引用 9 件1995 年: 被引用 15 件1996 年: 被引用 7 件1997 年: 被引用 5 件1998 年: 被引用 13 件1999 年: 被引用 6 件2000 年: 被引用 16 件2001 年: 被引用 13 件2002 年: 被引用 6 件2003 年: 被引用 16 件2004 年: 被引用 26 件2005 年: 被引用 38 件2006 年: 被引用 35 件2007 年: 被引用 70 件2008 年: 被引用 103 件2009 年: 被引用 85 件2010 年: 被引用 97 件2011 年: 被引用 145 件2012 年: 被引用 146 件2013 年: 被引用 199 件2014 年: 被引用 178 件2015 年: 被引用 179 件2016 年: 被引用 234 件2017 年: 被引用 202 件2018 年: 被引用 195 件2019 年: 被引用 572 件2020 年: 被引用 716 件2021 年: 被引用 769 件2022 年: 被引用 684 件2023 年: 被引用 635 件2024 年: 被引用 885 件2025 年: 被引用 596 件2026 年: 被引用 57 件1963〜1979 年は被引用が無いため表示していません

引用元

国・地域

この著者を引用した国・地域の世界地図アメリカ合衆国: 引用元論文 2,563 件、この内訳の 32.9%中国: 引用元論文 728 件、この内訳の 9.3%イギリス: 引用元論文 553 件、この内訳の 7.1%ドイツ: 引用元論文 445 件、この内訳の 5.7%フランス: 引用元論文 299 件、この内訳の 3.8%カナダ: 引用元論文 237 件、この内訳の 3.1%スイス: 引用元論文 233 件、この内訳の 3%イタリア: 引用元論文 213 件、この内訳の 2.7%日本: 引用元論文 196 件、この内訳の 2.5%スペイン: 引用元論文 168 件、この内訳の 2.2%イスラエル: 引用元論文 151 件、この内訳の 1.9%オランダ: 引用元論文 145 件、この内訳の 1.9%
0%32.9%その他 23.9%

機関

分野

  • Biochemistry, Genetics and Molecular Biology55.6%
  • Medicine25.4%
  • Computer Science6.3%
  • Immunology and Microbiology3.3%
  • Materials Science2.6%
  • Engineering1.4%
  • その他5.4%

トピック

  • Protein Structure and Dynamics11.5%
  • RNA and protein synthesis mechanisms5.5%
  • Monoclonal and Polyclonal Antibodies Research5.3%
  • Computational Drug Discovery Methods5.1%
  • Enzyme Structure and Function4.8%
  • vaccines and immunoinformatics approaches2.5%
  • その他65.3%

共著者

全論文

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  1. The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design

    著者: Rebecca F. Alford, Andrew Leaver‐Fay, Jeliazko R. Jeliazkov, Matthew J. O’Meara, Frank DiMaio, Hahnbeom Park, Maxim V. Shapovalov, P. Douglas Renfrew, Vikram Khipple Mulligan, Kalli Kappel, Jason W. Labonte, Michael S. Pacella, Richard Bonneau, Philip Bradley, Roland L. Dunbrack, Rhiju Das, David Baker, Brian Kuhlman, Tanja Kortemme, Jeffrey J. Gray - Journal of Chemical Theory and Computation 2017 被引用: 1,570

  2. Macromolecular modeling and design in Rosetta: recent methods and frameworks

    著者: Julia Koehler Leman, Brian D. Weitzner, Steven M. Lewis, Jared Adolf‐Bryfogle, Nawsad Alam, Rebecca F. Alford, Melanie L. Aprahamian, David Baker, Kyle A. Barlow, Patrick Barth, Benjamin Basanta, Brian J. Bender, Kristin Blacklock, Jaume Bonet, Scott E. Boyken, Phil Bradley, Chris Bystroff, Patrick Conway, Seth Cooper, Bruno E. Correia, Brian Coventry, Rhiju Das, René M. de Jong, Frank DiMaio, Lorna Dsilva, Roland L. Dunbrack, Alexander S. Ford, Brandon Frenz, Darwin Fu, Caleb Geniesse, Lukasz Goldschmidt, Ragul Gowthaman, Jeffrey J. Gray, Dominik Gront, Sharon L. Guffy, Scott Horowitz, Po‐Ssu Huang, Thomas Huber, Timothy M. Jacobs, Jeliazko R. Jeliazkov, David K. Johnson, Kalli Kappel, John Karanicolas, Hamed Khakzad, Karen R. Khar, Sagar D. Khare, Firas Khatib, Alisa Khramushin, Indigo C. King, Robert Kleffner, Brian Koepnick, Tanja Kortemme, Georg Kuenze, Brian Kuhlman, Daisuke Kuroda, Jason W. Labonte, Jason Lai, Gideon Lapidoth, Andrew Leaver‐Fay, Steffen Lindert, Thomas W. Linsky, Nir London, Joseph H. Lubin, Sergey Lyskov, Jack B. Maguire, Lars Malmström, Enrique Marcos, Orly Marcu, Nicholas Marze, Jens Meiler, Rocco Moretti, Vikram Khipple Mulligan, Santrupti Nerli, Christoffer Norn, Shane Ó’Conchúir, Noah Ollikainen, Sergey Ovchinnikov, Michael S. Pacella, Xingjie Pan, Hahnbeom Park, Ryan E. Pavlovicz, Manasi A. Pethe, Brian G. Pierce, Kala Bharath Pilla, Barak Raveh, P. Douglas Renfrew, Shourya S. Roy Burman, Aliza B. Rubenstein, Marion F. Sauer, Andreas Scheck, William R. Schief, Ora Schueler‐Furman, Yuval Sedan, Alexander M. Sevy, Nikolaos G. Sgourakis, Lei Shi, Justin B. Siegel, Daniel‐Adriano Silva, Shannon T. Smith, Yifan Song ほか 8 名 - Nature Methods 2020 被引用: 923

  3. Rosetta3

    著者: Andrew Leaver‐Fay, Michael D. Tyka, Steven M. Lewis, Oliver F. Lange, James Thompson, Ron Jacak, Kristian W. Kaufman, P. Douglas Renfrew, Colin A. Smith, William Sheffler, Ian Davis, Seth Cooper, Adrien Treuille, Daniel J. Mandell, Florian Richter, Yih‐En Andrew Ban, Sarel J. Fleishman, Jacob E. Corn, David E. Kim, Sergey Lyskov, Monica Berrondo, Stuart Mentzer, Zoran Popović, James J. Havranek, John Karanicolas, Rhiju Das, Jens Meiler, Tanja Kortemme, Jeffrey J. Gray, Brian Kuhlman, David Baker, Philip Bradley - Methods in enzymology on CD-ROM/Methods in enzymology 2010 被引用: 2,008

  4. PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

    著者: Sidhartha Chaudhury, Sergey Lyskov, Jeffrey J. Gray - Bioinformatics, Bioinform. 2010 被引用: 909

  5. Deciphering antibody affinity maturation with language models and weakly supervised learning

    著者: Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam - arXiv (Cornell University), CoRR 2021 被引用: 104

  6. IgLM: Infilling language modeling for antibody sequence design

    著者: Richard W. Shuai, Jeffrey A. Ruffolo, Jeffrey J. Gray - Cell Systems 2023 被引用: 124

  7. Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations

    著者: Jeffrey J. Gray, Stewart Moughon, Chu Wang, Ora Schueler‐Furman, Brian Kuhlman, Carol A. Rohl, David Baker - Journal of Molecular Biology 2003 被引用: 1,169

  8. The RosettaDock server for local protein-protein docking

    著者: Sergey Lyskov, Jeffrey J. Gray - Nucleic Acids Research, Nucleic Acids Res. 2008 被引用: 614

  9. Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

    著者: Marc F. Lensink, Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato, Charlotte van Noort, João M. C. Teixeira, Alexandre M. J. J. Bonvin, Ren Kong, Hang Shi, Xufeng Lu, Shan Chang, Jian Liu, Zhiye Guo, Xiao Chen, Alex Morehead, Raj S. Roy, Tianqi Wu, Nabin Giri, Farhan Quadir, Chen Chen, Jianlin Cheng, Carlos A. Del Carpio, Eichiro Ichiishi, Luis Angel Rodríguez‐Lumbreras, Juan Fernández‐Recio, Ameya Harmalkar, Lee‐Shin Chu, Samuel W. Canner, Rituparna Smanta, Jeffrey J. Gray, Hao Li, Peicong Lin, Jiahua He, Huanyu Tao, Sheng‐You Huang, Jorge Roel‐Touris, Brian Jiménez‐García, Charles Christoffer, Anika Jain, Yuki Kagaya, Harini Kannan, Tsukasa Nakamura, Genki Terashi, Jacob Verburgt, Yuanyuan Zhang, Zicong Zhang, Hayato Fujuta, Masakazu Sekijima, Daisuke Kihara, Omeir Khan, Sergei Kotelnikov, Usman Ghani, Dzmitry Padhorny, Dmitri Beglov, Sándor Vajda, Dima Kozakov, Surendra S. Negi, Tiziana Ricciardelli, Didier Barradas‐Bautista, Zhen Cao, Mohit Chawla, Luigi Cavallo, Romina Oliva, Rui Yin, Melyssa Cheung, Johnathan D. Guest, Jessica Lee, Brian G. Pierce, Ben Shor, Tomer Cohen, Matan Halfon, Dina Schneidman‐Duhovny, Shaowen Zhu, Rujie Yin, Yuanfei Sun, Yang Shen, Martyna Maszota‐Zieleniak, Krzysztof K. Bojarski, Emilia A. Lubecka, Mateusz Marcisz, Annemarie Danielsson, Łukasz Dziadek, Margrethe Gaardløs, Artur Giełdoń, Adam Liwo, Sergey A. Samsonov, Rafał Ślusarz, Karolina Zięba, Adam K. Sieradzan, Cezary Czaplewski, Shinpei Kobayashi, Yuta Miyakawa, Yasuomi Kiyota, Mayuko Takeda‐Shitaka, Kliment Olechnovič, Lukas Valančauskas, Justas Dapkūnas, Česlovas Venclovas ほか 13 名 - Proteins Structure Function and Bioinformatics 2023 被引用: 81

  10. A Comprehensive, High-Resolution Map of a Gene’s Fitness Landscape

    著者: Elad Firnberg, Jason W. Labonte, Jeffrey J. Gray, Marc Ostermeier - Molecular Biology and Evolution 2014 被引用: 387

  11. Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

    著者: Sergey Lyskov, Fang‐Chieh Chou, Shane Ó Conchúir, Bryan S. Der, Kevin Drew, Daisuke Kuroda, Jianqing Xu, Brian D. Weitzner, P. Douglas Renfrew, Parin Sripakdeevong, Benjamin Borgo, James J. Havranek, Brian Kuhlman, Tanja Kortemme, Richard Bonneau, Jeffrey J. Gray, Rhiju Das - PLoS ONE 2013 被引用: 458

  12. Efficient flexible backbone protein-protein docking for challenging targets

    著者: Nicholas A. Marze, Shourya S. Roy Burman, William Sheffler, Jeffrey J. Gray - Bioinformatics, Bioinform. 2017 被引用: 191

  13. Toward generalizable prediction of antibody thermostability using machine learning on sequence and structure features

    著者: Ameya Harmalkar, Roshan Rao, Yuxuan Richard Xie, Jonas Honer, Wibke Deisting, Jonas Anlahr, Anja Hoenig, Julia Czwikla, Eva Sienz-Widmann, Doris Rau, Austin J. Rice, Timothy P. Riley, Danqing Li, Hannah B. Catterall, Christine E. Tinberg, Jeffrey J. Gray, Kathy Y. Wei - mAbs 2023 被引用: 47

  14. Targeting the CoREST complex with dual histone deacetylase and demethylase inhibitors

    著者: Jay H. Kalin, Muzhou Wu, Andrea V. Gómez, Yun Song, Jayanta Das, Dawn Hayward, Nkosi Adejola, Mingxuan Wu, Izabela Panova, Hye Jin Chung, Edward Kim, Holly Roberts, Justin M. Roberts, Polina Prusevich, Jeliazko R. Jeliazkov, Shourya S. Roy Burman, Louise Fairall, Charles P. Milano, Abdulkerim Eroglu, Charlotte M. Proby, Albena T. Dinkova‐Kostova, Wayne W. Hancock, Jeffrey J. Gray, James E. Bradner, Sérgio Valente, Antonello Mai, Nicole M. Anders, Michelle A. Rudek, Yong Hu, Byungwoo Ryu, John W. R. Schwabe, Andrea Mattevi, Rhoda M. Alani, Philip A. Cole - Nature Communications 2018 被引用: 233

  15. Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

    著者: Marc F. Lensink, Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil, Tereza Clarence, Paul A. Bates, Ren Kong, Bin Liu, Guangbo Yang, Ming Liu, Hang Shi, Xufeng Lu, Shan Chang, Raj S. Roy, Farhan Quadir, Jian Liu, Jianlin Cheng, Anna Antoniak, Cezary Czaplewski, Artur Giełdoń, Mateusz Kogut, Agnieszka G. Lipska, Adam Liwo, Emilia A. Lubecka, Martyna Maszota‐Zieleniak, Adam K. Sieradzan, Rafał Ślusarz, Patryk A. Wesołowski, Karolina Zięba, Carlos Adriel Del Carpio Munoz, Eiichiro Ichiishi, Ameya Harmalkar, Jeffrey J. Gray, Alexandre M. J. J. Bonvin, Francesco Ambrosetti, Rodrigo V. Honorato, Zuzana Jandová, Brian Jiménez‐García, Panagiotis I. Koukos, Siri van Keulen, Charlotte W. van Noort, Manon Réau, Jorge Roel‐Touris, Sergei Kotelnikov, Dzmitry Padhorny, Kathryn A. Porter, Andrey Alekseenko, Mikhail Ignatov, Israel Desta, Ryota Ashizawa, Zhuyezi Sun, Usman Ghani, Nasser Hashemi, Sándor Vajda, Dima Kozakov, Mireia Rosell, Luis Angel Rodríguez‐Lumbreras, Juan Fernández‐Recio, Agnieszka Karczyńska, Sergei Grudinin, Yumeng Yan, Hao Li, Peicong Lin, Sheng‐You Huang, Charles Christoffer, Genki Terashi, Jacob Verburgt, Daipayan Sarkar, Tunde Aderinwale, Xiao Wang, Daisuke Kihara, Tsukasa Nakamura, Yuya Hanazono, Ragul Gowthaman, Johnathan D. Guest, Rui Yin, Ghazaleh Taherzadeh, Brian G. Pierce, Didier Barradas‐Bautista, Zhen Cao, Luigi Cavallo, Romina Oliva, Yuanfei Sun, Shaowen Zhu, Yang Shen, Taeyong Park, Hyeonuk Woo, Jinsol Yang, Sohee Kwon, Jonghun Won, Chaok Seok, Yasuomi Kiyota, Shinpei Kobayashi, Yoshiki Harada, Mayuko Takeda‐Shitaka, Petras J. Kundrotas, Amar Singh, Ilya A. Vakser ほか 9 名 - Proteins Structure Function and Bioinformatics 2021 被引用: 127

  16. Modeling and docking of antibody structures with Rosetta

    著者: Brian D. Weitzner, Jeliazko R. Jeliazkov, Sergey Lyskov, Nicholas Marze, Daisuke Kuroda, Rahel Frick, Jared Adolf‐Bryfogle, Naireeta Biswas, Roland L. Dunbrack, Jeffrey J. Gray - Nature Protocols 2017 被引用: 280

  17. What does AlphaFold3 learn about antigen and nanobody docking, and what remains unsolved?

    著者: Fatima N. Hitawala, Jeffrey J. Gray - 2024 被引用: 43

  18. Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

    著者: Sidhartha Chaudhury, Monica Berrondo, Brian D. Weitzner, Pravin Muthu, Hannah E. Bergman, Jeffrey J. Gray - PLoS ONE 2011 被引用: 333

  19. Flexible protein–protein docking with a multitrack iterative transformer

    著者: Lee‐Shin Chu, Jeffrey A. Ruffolo, Ameya Harmalkar, Jeffrey J. Gray - Protein Science 2023 被引用: 32

  20. Generative language modeling for antibody design

    著者: Richard W. Shuai, Jeffrey A. Ruffolo, Jeffrey J. Gray - 2021 被引用: 48

  21. AI models for protein design are driving antibody engineering

    著者: Michael Chungyoun, Jeffrey J. Gray - Current Opinion in Biomedical Engineering 2023 被引用: 37

  22. SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models

    著者: Aroop Sircar, Jeffrey J. Gray - PLoS Computational Biology, PLoS Comput. Biol. 2010 被引用: 186

  23. Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires

    著者: Brandon J. DeKosky, Oana I. Lungu, Daechan Park, E. L. Johnson, Wissam Charab, Constantine Chrysostomou, Daisuke Kuroda, Andrew D. Ellington, Gregory C. Ippolito, Jeffrey J. Gray, George Georgiou - National Academy of Sciences, Proceedings of the National Academy of Sciences 2016 被引用: 216

  24. Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules

    著者: Florian Richter, Monica Berrondo, Andrew Leaver‐Fay, James Thompson, S. I. Cooper, Daniel J. Mandell, Yih‐En Andrew Ban, William Sheffler, Brian Kuhlman, Ron Jacak, P. Douglas Renfrew, Ian Davis, Oliver F. Lange, David Baker, Steven M. Lewis, Rhiju Das, Sarel J. Fleishman, David E. Kim, Tanja Kortemme, Sergey Lyskov, Jacob E. Corn, Philip Bradley, Colin A. Smith, Michael D. Tyka, John Karanicolas, Stuart Mentzer, Jeffrey J. Gray, Jens Meiler, Zoran Popović, James J. Havranek, Kristian W. Kaufman, Adrien Treuille - http://depts.washington.edu/bakerpg/drupal/system/files/leaver-fay11A.pdf 2020 被引用: 144