Tal Pupko
2000–2025 年に発表
- 86
- 論文数
- 20,257
- 被引用数
- 54
- h 指数
- 74
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology64.6%
- Medicine13.3%
- Agricultural and Biological Sciences5.7%
- Immunology and Microbiology3.5%
- Computer Science3.5%
- Environmental Science2.8%
- その他6.6%
トピック
- Genomics and Phylogenetic Studies5.7%
- RNA and protein synthesis mechanisms5%
- Protein Structure and Dynamics4%
- RNA Research and Splicing2.3%
- RNA modifications and cancer2.2%
- Enzyme Structure and Function2.2%
- その他78.6%
共著者
- Itay Mayrose25
- Haim Ashkenazy12
- Nir Ben-Tal10
- Oren Avram10
- Eric Martz9
- David Burstein8
- Nimrod D. Rubinstein8
- Noa Ecker8
- Osnat Penn8
- Dorothée Huchon7
- Elya Wygoda7
- Fabian Glaser7
- Ofir Cohen7
- Adi Doron-Faigenboim6
- Edo Dotan6
- Dan Graur5
- Dana Azouri5
- Gil Loewenthal5
- Michael Alburquerque5
- Naama Wagner5
- Yishay Mansour5
- Asher Moshe4
- Eli Levy Karin4
- Eran Bacharach4
全論文
- ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
著者: Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal - Nucleic Acids Research, Nucleic Acids Res. 2016 被引用: 3,447
- Using evolutionary data to make sense of macromolecules with a “face‐lifted” ConSurf
著者: Barak Yariv, Elon Yariv, Amit Kessel, Gal Masrati, Adi Ben Chorin, Eric Martz, Itay Mayrose, Tal Pupko, Nir Ben‐Tal - Protein Science 2023 被引用: 436
- ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
著者: Haim Ashkenazy, Elana Erez, Eric Martz, Tal Pupko, Nir Ben-Tal - Nucleic Acids Research, Nucleic Acids Res. 2010 被引用: 1,911
- ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures
著者: Meytal Landau, Itay Mayrose, Yossi Rosenberg, Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal - Nucleic Acids Research, Nucleic Acids Res. 2005 被引用: 1,455
- GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters
著者: Itamar Sela, Haim Ashkenazy, Kazutaka Katoh, Tal Pupko - Nucleic Acids Research, Nucleic Acids Res. 2015 被引用: 887
- Model selection may not be a mandatory step for phylogeny reconstruction
著者: Shiran Abadi, Dana Azouri, Tal Pupko, Itay Mayrose - Nature Communications 2019 被引用: 425
- ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information
著者: Fabian Glaser, Tal Pupko, Inbal Paz, Rachel E Bell, Dalit Bechor-Shental, Eric Martz, Nir Ben‐Tal - Bioinformatics, Bioinform. 2002 被引用: 1,261
- FastML: a web server for probabilistic reconstruction of ancestral sequences
著者: Haim Ashkenazy, Osnat Penn, Adi Doron-Faigenboim, Ofir Cohen, Gina Cannarozzi, Oren Zomer, Tal Pupko - Nucleic Acids Research, Nucleic Acids Res. 2012 被引用: 373
- Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues
著者: Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal - Bioinformatics, ISMB 2002 被引用: 658
- ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function
著者: Gershon Celniker, Guy Nimrod, Haim Ashkenazy, Fabian Glaser, Eric Martz, Itay Mayrose, Tal Pupko, Nir Ben‐Tal - Israel Journal of Chemistry 2013 被引用: 598
- Harnessing machine learning to guide phylogenetic-tree search algorithms
著者: Dana Azouri, Shiran Abadi, Yishay Mansour, Itay Mayrose, Tal Pupko - Nature Communications 2021 被引用: 70
- Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires
著者: David Burstein, Francisco Amaro, Tal Zusman, Ziv Lifshitz, Ofir Cohen, Jack A. Gilbert, Tal Pupko, Howard A. Shuman, Gil Segal - Nature Genetics 2016 被引用: 295
- A Fast Algorithm for Joint Reconstruction of Ancestral Amino Acid Sequences
著者: Tal Pupko, Itsik Pe, Ron Shamir, Dan Graur - Molecular Biology and Evolution 2000 被引用: 400
- Type III secretion system effectors form robust and flexible intracellular virulence networks
著者: David Ruano‐Gallego, Julia Sanchez‐Garrido, Zuza Kozik, Elena Núñez Berrueco, Massiel Cepeda-Molero, Caroline Mullineaux-Sanders, Yasaman Naemi Baghshomali, Sabrina L. Slater, Naama Wagner, Izabela Glegola-Madejska, Theodoros I. Roumeliotis, Tal Pupko, Luis Ángel Fernández, Alfonso Rodríguez‐Patón, Jyoti S. Choudhary, Gad Frankel - Science 2021 被引用: 115
- ModelTeller: Model Selection for Optimal Phylogenetic Reconstruction Using Machine Learning
著者: Shiran Abadi, Oren Avram, Saharon Rosset, Tal Pupko, Itay Mayrose - Molecular Biology and Evolution 2020 被引用: 56
- GUIDANCE: a web server for assessing alignment confidence scores
著者: Osnat Penn, Eyal Privman, Haim Ashkenazy, Giddy Landan, Dan Graur, Tal Pupko - Nucleic Acids Research, Nucleic Acids Res. 2010 被引用: 632
- Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition
著者: Maayan Amit, Maya Donyo, Dror Hollander, Amir Goren, Eddo Kim, Sahar Gelfman, Galit Lev-Maor, David Burstein, Schraga Schwartz, Benny Postolsky, Tal Pupko, Gil Ast - Cell Reports 2012 被引用: 365
- Genome-Scale Identification of Legionella pneumophila Effectors Using a Machine Learning Approach
著者: David Burstein, Tal Zusman, Elena Degtyar, Ram Viner, Gil Segal, Tal Pupko - PLoS Pathogens 2009 被引用: 270
- Epitopia: a web-server for predicting B-cell epitopes
著者: Nimrod D. Rubinstein, Itay Mayrose, Eric Martz, Tal Pupko - BMC Bioinformatics, BMC Bioinform. 2009 被引用: 232
- Evaluation of the Ability of AlphaFold to Predict the Three-Dimensional Structures of Antibodies and Epitopes
著者: Ksenia Polonsky, Tal Pupko, Natalia T. Freund - The Journal of Immunology 2023 被引用: 34
- ConSeq: the identification of functionally and structurally important residues in protein sequences
著者: Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal - Bioinformatics, Bioinform. 2004 被引用: 521
- The interface of protein structure, protein biophysics, and molecular evolution
著者: David A. Liberles, Sarah A. Teichmann, İvet Bahar, Ugo Bastolla, Jesse D. Bloom, Erich Bornberg‐Bauer, Lucy J. Colwell, A. P. Jason de Koning, Nikolay V. Dokholyan, Julián Echave, Arne Elofsson, Dietlind L. Gerloff, Richard A. Goldstein, Johan A. Grahnen, Mark T. Holder, Clemens Lakner, Nicholas Lartillot, Simon C. Lovell, Gavin J. P. Naylor, Tina Perica, David D. Pollock, Tal Pupko, Lynne Regan, Andrew J. Roger, Nimrod D. Rubinstein, Eugene I. Shakhnovich, Kimmen Sjölander, Shamil Sunyaev, A Teufel, Jeffrey L. Thorne, Joseph W. Thornton, Daniel Weinreich, Simon Whelan - Protein Science 2012 被引用: 233
- Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations
著者: Alan McNally, Yaara Oren, Darren J. Kelly, Ben Pascoe, Steven Dunn, Tristan Sreecharan, Minna Vehkala, Niko Välimäki, Michael B. Prentice, Amgad Ashour, Oren Avram, Tal Pupko, Ulrich Dobrindt, Ivan Literák, Sebastian Guenther, Katharina Schaufler, Lothar H. Wieler, Zong Zhiyong, Samuel K. Sheppard, James O. McInerney, Jukka Corander - PLoS Genetics 2016 被引用: 213
- M1CR0B1AL1Z3R - a user-friendly web server for the analysis of large-scale microbial genomics data
著者: Oren Avram, Dana Rapoport, Shir Portugez, Tal Pupko - Nucleic Acids Research, Nucleic Acids Res. 2019 被引用: 121