Rita Casadio
1974–2025 年に発表
- 174
- 論文数
- 20,167
- 被引用数
- 66
- h 指数
- 133
- i10 指数
被引用数
引用元
国・地域
機関
分野
- Biochemistry, Genetics and Molecular Biology67.7%
- Medicine13.1%
- Agricultural and Biological Sciences5.2%
- Computer Science4.7%
- Immunology and Microbiology2%
- Neuroscience1.3%
- その他6%
トピック
- Machine Learning in Bioinformatics9.4%
- Protein Structure and Dynamics8.5%
- RNA and protein synthesis mechanisms5.8%
- Bioinformatics and Genomic Networks5.3%
- Genomics and Phylogenetic Studies4.2%
- Computational Drug Discovery Methods3.5%
- その他63.3%
共著者
- Pier Luigi Martelli97
- Piero Fariselli97
- Castrense Savojardo52
- Giuseppe Profiti15
- Emidio Capriotti12
- Ivan Rossi12
- Marco Vassura12
- Pietro di Lena12
- Giulia Babbi11
- Luciano Margara11
- Damiano Piovesan10
- Matteo Manfredi10
- Andrea Pierleoni6
- Andrea Zauli6
- Lisa Bartoli6
- Luca Fontanesi6
- Michele Finelli5
- Predrag Radivojac5
- Remo Calabrese5
- Samuele Bovo5
- Valentina Indio5
- Alfonso Valencia4
- Anders Krogh4
- Burkhard Rost4
全論文
- A large-scale evaluation of computational protein function prediction
著者: Predrag Radivojac, Wyatt T. Clark, Tal Oron, Alexandra M. Schnoes, Tobias Wittkop, Artem Sokolov, Kiley Graim, Christopher S. Funk, Karin Verspoor, Asa Ben‐Hur, Gaurav Pandey, Jeffrey M. Yunes, Ameet Talwalkar, Susanna Repo, Michael L Souza, Damiano Piovesan, Rita Casadio, Zheng Wang, Jianlin Cheng, Hai Fang, Julian Gough, Patrik Koskinen, Petri Törönen, Jussi Nokso-Koivisto, Liisa Holm, Domenico Cozzetto, Daniel Buchan, Kevin Bryson, David T. Jones, Bhakti Limaye, Harshal Inamdar, Avik Datta, Sunitha K Manjari, Rajendra Joshi, Meghana Chitale, Daisuke Kihara, Andreas Martin Lisewski, Serkan Erdin, Eric Venner, Olivier Lichtarge, Robert Rentzsch, Haixuan Yang, Alfonso E. Romero, Prajwal Bhat, Alberto Paccanaro, Tobias Hamp, Rebecca Kaßner, Stefan Seemayer, Esmeralda Vicedo, Christian Schaefer, Dominik Achten, Florian Auer, Ariane C. Boehm, Tatjana Braun, Maximilian Hecht, B. Mark Heron, Peter Hönigschmid, Thomas A. Hopf, Stefanie Kaufmann, Michael Kiening, Denis Krompaß, Cedric Landerer, Yannick Mahlich, Manfred Roos, Jari Björne, Tapio Salakoski, Andrew Wong, Hagit Shatkay, Fanny Gatzmann, I. Sommer, Mark N. Wass, Michael J.E. Sternberg, Nives Škunca, Fran Supek, Matko Bošnjak, Panče Panov, Sašo Džeroski, Tomislav Šmuc, Yiannis Kourmpetis, Aalt D. J. van Dijk, Cajo J. F. ter Braak, Yuanpeng Zhou, Qingtian Gong, Xinran Dong, Weidong Tian, Marco Falda, Paolo Fontana, Enrico Lavezzo, Barbara Di Camillo, Stefano Toppo, Liang Lan, Nemanja Djuric, Yuhong Guo, Slobodan Vučetić, Amos Bairoch, Michal Linial, Patricia C. Babbitt, Steven E. Brenner, Christine Orengo, Burkhard Rost ほか 2 名 - Nature Methods 2013 被引用: 1,095
- The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
著者: Naihui Zhou, Yuxiang Jiang, Timothy Bergquist, Alexandra Lee, Balint Z Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George P. Georghiou, Huy Nguyen, Md-Nafiz Hamid, L. Taylor Davis, Tunca Doğan, Volkan Atalay, Ahmet Süreyya Rifaioğlu, Alperen Dalkıran, Rengül Çetin-Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemović, Vladimir Perović, Radoslav Davidović, Neven Šumonja, Nevena Veljković, Ehsaneddin Asgari, Mohammad R. K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fábio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan Medlar, Elaine Zosa, Itamar Borukhov, Ilya B. Novikov, Angela D. Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Sašo Džeroski, Ian Sillitoe, Sayoni Das, Jonathan Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, José Manuel Rodrı́guez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Ré, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie‐Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo ほか 67 名 - Genome biology 2019 被引用: 482
- I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
著者: Emidio Capriotti, Piero Fariselli, Rita Casadio - Nucleic Acids Research, Nucleic Acids Res. 2005 被引用: 2,099
- BUSCA: an integrative web server to predict subcellular localization of proteins
著者: Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Rita Casadio - Nucleic Acids Research, Nucleic Acids Res. 2018 被引用: 473
- An expanded evaluation of protein function prediction methods shows an improvement in accuracy
著者: Yuxiang Jiang, Tal Oron, Wyatt T. Clark, Asma Bankapur, Daniel D’Andrea, Rosalba Lepore, Christopher S. Funk, Indika Kahanda, Karin Verspoor, Asa Ben‐Hur, Da Chen Emily Koo, Duncan Penfold-Brown, Dennis Shasha, Noah Youngs, Richard Bonneau, Alexandra J. Lin, Sayed Mohammad Ebrahim Sahraeian, Pier Luigi Martelli, Giuseppe Profiti, Rita Casadio, Renzhi Cao, Zhaolong Zhong, Jianlin Cheng, Adrian Altenhoff, Nives Škunca, Christophe Dessimoz, Tunca Doğan, Kai Hakala, Suwisa Kaewphan, Farrokh Mehryary, Tapio Salakoski, Filip Ginter, Hai Fang, Ben Smithers, Matt E. Oates, Julian Gough, Petri Törönen, Patrik Koskinen, Liisa Holm, Ching-Tai Chen, Wen−Lian Hsu, Kevin Bryson, Domenico Cozzetto, Federico Minneci, David T. Jones, Samuel Chapman, Dukka Bkc, Ishita Khan, Daisuke Kihara, Dan Ofer, Nadav Rappoport, Amos Stern, Elena Cibrián–Uhalte, Paul Denny, Rebecca E. Foulger, Reija Hieta, Duncan Legge, Ruth C. Lovering, Michele Magrane, Anna N. Melidoni, Prudence Mutowo, Klemens Pichler, Aleksandra Shypitsyna, Biao Li, Pooya Zakeri, Sarah ElShal, Léon-Charles Tranchevent, Sayoni Das, Natalie L. Dawson, David Lee, Jonathan Lees, Ian Sillitoe, Prajwal Bhat, Tamás Nepusz, Alfonso E. Romero, Rajkumar Sasidharan, Haixuan Yang, Alberto Paccanaro, Jesse Gillis, Adriana E. Sedeño-Cortés, Paul Pavlidis, Shou Feng, Juan Miguel Cejuela, Tatyana Goldberg, Tobias Hamp, Lothar Richter, Asaf Salamov, Toni Gabaldón, Marina Marcet‐Houben, Fran Supek, Qingtian Gong, Wei Ning, Yuanpeng Zhou, Weidong Tian, Marco Falda, Paolo Fontana, Enrico Lavezzo, Stefano Toppo, Carlo Ferrari, Manuel Giollo ほか 47 名 - Genome biology 2016 被引用: 452
- Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information
著者: Emidio Capriotti, Remo Calabrese, Rita Casadio - Bioinformatics, Bioinform. 2006 被引用: 968
- INPS-MD: a web server to predict stability of protein variants from sequence and structure
著者: Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio - Bioinformatics, Bioinform. 2016 被引用: 311
- Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences
著者: Castrense Savojardo, Matteo Manfredi, Pier Luigi Martelli, Rita Casadio - Frontiers in Molecular Biosciences 2021 被引用: 172
- Machine learning solutions for predicting protein–protein interactions
著者: Rita Casadio, Pier Luigi Martelli, Castrense Savojardo - Wiley Interdisciplinary Reviews Computational Molecular Science 2022 被引用: 80
- Functional annotations improve the predictive score of human disease-related mutations in proteins
著者: Remo Calabrese, Emidio Capriotti, Piero Fariselli, Pier Luigi Martelli, Rita Casadio - Human Mutation 2009 被引用: 716
- WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation
著者: Emidio Capriotti, Remo Calabrese, Piero Fariselli, Pier Luigi Martelli, Russ B. Altman, Rita Casadio - BMC Genomics 2013 被引用: 370
- DeepSig: deep learning improves signal peptide detection in proteins
著者: Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio - Bioinformatics, Bioinform. 2017 被引用: 167
- CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
著者: Shantanu Jain, Constantina Bakolitsa, Steven E. Brenner, Predrag Radivojac, John Moult, Susanna Repo, Roger A. Hoskins, Gaia Andreoletti, Daniel Barsky, Ajithavalli Chellapan, Hoyin Chu, Navya Dabbiru, Naveen K. Kollipara, Melissa Ly, Andrew J. Neumann, Lipika R. Pal, Eric Odell, Gaurav Pandey, Robin C. Peters-Petrulewicz, Rajgopal Srinivasan, Stephen F. Yee, Sri Jyothsna Yeleswarapu, Maya Zuhl, Ogün Adebalı, Ayoti Patra, M Beer, Raghavendra Hosur, Jian Peng, Brady Bernard, M. Victoria Berry, Shengcheng Dong, Alan P. Boyle, Aashish N. Adhikari, Jingqi Chen, Zhiqiang Hu, Robert Wang, Yaqiong Wang, Max J. Miller, Yanran Wang, Yana Bromberg, Paola Turina, Emidio Capriotti, James J. Han, Kıvılcım Öztürk, Hannah Carter, Giulia Babbi, Samuele Bovo, Pietro Di Lena, Pier Luigi Martelli, Castrense Savojardo, Rita Casadio, Melissa Cline, Greet De Baets, Sandra Bonache, Orland Dı́ez, Sara Gutiérrez‐Enríquez, Alejandro Fernández, Gemma Montalban, Lars Ootes, Selen Özkan, Natàlia Padilla, Casandra Riera, Xavier de la Cruz, Mark Diekhans, Peter J. Huwe, Qiong Wei, Qifang Xu, Roland L. Dunbrack, Valer Gotea, Laura Elnitski, Gennady Margolin, Piero Fariselli, Ivan V. Kulakovskiy, Vsevolod J. Makeev, Dmitry Penzar, Ilya E. Vorontsov, Alexander V. Favorov, Julia Forman, Marcia A. Hasenahuer, Marı́a Silvina Fornasari, Gustavo Parisi, Žiga Avsec, Muhammed Hasan Çelik, Thi Yen Duong Nguyen, Julien Gagneur, Fangyuan Shi, Matthew D. Edwards, Yuchun Guo, Kevin Tian, Haoyang Zeng, David K. Gifford, Jonathan Göke, Jan Zaucha, Julian Gough, Graham R. S. Ritchie, Adam Frankish, Jonathan M. Mudge, Jennifer Harrow, Erin L. Young, Yao Yu ほか 329 名 - Genome biology 2024 被引用: 58
- PredGPI: a GPI-anchor predictor
著者: Andrea Pierleoni, Pier Luigi Martelli, Rita Casadio - BMC Bioinformatics, BMC Bioinform. 2008 被引用: 678
- Transglutaminases: Nature’s biological glues
著者: Martin Griffin, Rita Casadio, Carlo M. Bergamini - Biochemical Journal 2002 被引用: 1,036
- A three-state prediction of single point mutations on protein stability changes
著者: Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio - BMC Bioinformatics, BMC Bioinform. 2008 被引用: 338
- INPS: predicting the impact of non-synonymous variations on protein stability from sequence
著者: Piero Fariselli, Pier Luigi Martelli, Castrense Savojardo, Rita Casadio - Bioinformatics, Bioinform. 2015 被引用: 160
- Tools and data services registry: a community effort to document bioinformatics resources
著者: Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak - Nucleic Acids Research, Nucleic Acids Res. 2015 被引用: 158
- The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
著者: Naihui Zhou, Yuxiang Jiang, Timothy Bergquist, Alexandra Lee, Balint Z Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George P. Georghiou, Huy Nguyen, Md-Nafiz Hamid, L. Taylor Davis, Tunca Doğan, Volkan Atalay, Ahmet Süreyya Rifaioğlu, Alperen Dalkıran, Rengül Çetin-Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemović, Vladimir Perović, Radoslav Davidović, Neven Šumonja, Nevena Veljković, Ehsaneddin Asgari, Mohammad RK Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fábio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Jie Hou, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan Medlar, Elaine Zosa, Itamar Borukhov, Ilya B. Novikov, Angela D. Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Sašo Džeroski, Ian Sillitoe, Sayoni Das, Jonathan Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Wiarwick Vesztrocy, José Manuel Rodrı́guez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Ré, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie‐Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo ほか 68 名 - 2019 被引用: 64
- DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks
著者: Castrense Savojardo, Niccolò Bruciaferri, Giacomo Tartari, Pier Luigi Martelli, Rita Casadio - Bioinformatics, Bioinform. 2019 被引用: 118
- BaCelLo: a balanced subcellular localization predictor
著者: Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio - Bioinformatics, ISMB (Supplement of Bioinformatics) 2006 被引用: 346
- Correlating disease-related mutations to their effect on protein stability: A large-scale analysis of the human proteome
著者: Rita Casadio, Marco Vassura, Shalinee Tiwari, Piero Fariselli, Pier Luigi Martelli - Human Mutation 2011 被引用: 110
- Finding functional motifs in protein sequences with deep learning and natural language models
著者: Castrense Savojardo, Pier Luigi Martelli, Rita Casadio - Current Opinion in Structural Biology 2023 被引用: 24
- Resources and tools for rare disease variant interpretation
著者: Luana Licata, Allegra Via, Paola Turina, Giulia Babbi, Silvia Benevenuta, Claudio Carta, Rita Casadio, A Cicconardi, Angelo Facchiano, Piero Fariselli, Deborah Giordano, Federica Isidori, Anna Marabotti, Pier Luigi Martelli, Stefano Pascarella, Michele Pinelli, Tommaso Pippucci, Roberta Russo, Castrense Savojardo, Bernardina Scafuri, Lucrezia Valeriani, Emidio Capriotti - Frontiers in Molecular Biosciences 2023 被引用: 16
