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Alejandro Reyes

Active 1997–2025

76
Papers
18,176
Citations
45
h-index
64
i10-index

Citations

Citations per year for Alejandro Reyes1957: 1 citations1986: 2 citations1987: 1 citations1998: 1 citations1999: 1 citations2000: 1 citations2003: 2 citations2005: 1 citations2006: 2 citations2007: 6 citations2008: 5 citations2009: 1 citations2010: 15 citations2011: 52 citations2012: 96 citations2013: 179 citations2014: 204 citations2015: 261 citations2016: 324 citations2017: 336 citations2018: 367 citations2019: 845 citations2020: 890 citations2021: 1,003 citations2022: 807 citations2023: 593 citations2024: 855 citations2025: 456 citations2026: 19 citations1958–1985: no citations, so these years are not shown1988–1997: no citations, so these years are not shown2001–2002: no citations, so these years are not shown2004: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 2,875 citing papers, 24.4% of this breakdownChina: 1,105 citing papers, 9.4% of this breakdownUnited Kingdom: 846 citing papers, 7.2% of this breakdownGermany: 814 citing papers, 6.9% of this breakdownFrance: 443 citing papers, 3.8% of this breakdownAustralia: 405 citing papers, 3.4% of this breakdownCanada: 380 citing papers, 3.2% of this breakdownSpain: 359 citing papers, 3% of this breakdownItaly: 316 citing papers, 2.7% of this breakdownSwitzerland: 308 citing papers, 2.6% of this breakdownNetherlands: 304 citing papers, 2.6% of this breakdownJapan: 225 citing papers, 1.9% of this breakdown
0%24.4%Other 28.9%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology46.3%
  • Environmental Science19.7%
  • Medicine16.1%
  • Immunology and Microbiology4.4%
  • Agricultural and Biological Sciences3.7%
  • Computer Science3.4%
  • Other6.4%

Topics

  • Gut microbiota and health6.1%
  • Bacteriophages and microbial interactions5.3%
  • RNA Research and Splicing3.7%
  • Genomics and Phylogenetic Studies3.4%
  • RNA modifications and cancer3.4%
  • Pharmaceutical and Antibiotic Environmental Impacts2.7%
  • Other75.4%

Coauthors

All papers

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  1. Orchestrating high-throughput genomic analysis with Bioconductor

    Authors: Wolfgang Huber, Vincent J. Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S. Carvalho, Héctor Corrada Bravo, Sean Davis, Laurent Gatto, Thomas Girke, Raphaël Gottardo, Florian Hahne, Kasper D. Hansen, Rafael A. Irizarry, Michael Lawrence, Michael I. Love, James W. MacDonald, Valerie Obenchain, Andrzej K. Oleś, Hervé Pagès, Alejandro Reyes, Paul Shannon, Gordon K. Smyth, Dan Tenenbaum, Levi Waldron, Martin Morgan - Nature Methods 2015 cited by 3,988

  2. Minimum Information about an Uncultivated Virus Genome (MIUViG)

    Authors: Simon Roux, Evelien M. Adriaenssens, Bas E. Dutilh, Eugene V. Koonin, Andrew M. Kropinski, Mart Krupovìč, Jens H. Kuhn, Rob Lavigne, J. Rodney Brister, Arvind Varsani, Clara Amid, Ramy K. Aziz, Seth R. Bordenstein, Peer Bork, Mya Breitbart, Guy Cochrane, Rebecca A. Daly, Christelle Desnues, Melissa B. Duhaime, Joanne Emerson, François Enault, Jed A. Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L. Hurwitz, Natalia Ivanova, Jessica Labonté, Kyung-Bum Lee, Rex R. Malmstrom, Manuel Martínez‐García, Ilene Karsch‐Mizrachi, Hiroyuki Ogata, David Páez-Espino, Marie‐Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodríguez‐Valera, Karyna Rosario, Lynn M. Schriml, Frederik Schulz, Grieg F. Steward, Matthew B. Sullivan, Shinichi Sunagawa, Curtis A. Suttle, Ben Temperton, Susannah G. Tringe, Rebecca Vega Thurber, Nicole S. Webster, Katrine L Whiteson, Steven W. Wilhelm, K. Eric Wommack, Tanja Woyke, Kelly Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C. Kyrpides, Emiley A. Eloe‐Fadrosh - Nature Biotechnology 2018 cited by 790

  3. Detecting differential usage of exons from RNA-seq data

    Authors: Simon Anders, Alejandro Reyes, Wolfgang Huber - Genome Research 2012 cited by 1,645

  4. The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

    Authors: Kevin J. Forsberg, Alejandro Reyes, Bin Wang, Elizabeth M. Selleck, Morten Otto Alexander Sommer, Gautam Dantas - Science 2012 cited by 1,682

  5. A practical guide to methods controlling false discoveries in computational biology

    Authors: Keegan Korthauer, Patrick K. Kimes, Claire Duvallet, Alejandro Reyes, Ayshwarya Subramanian, Mingxiang Teng, Chinmay Shukla, Eric J. Alm, Stephanie C. Hicks - Genome biology 2019 cited by 471

  6. Viruses in the faecal microbiota of monozygotic twins and their mothers

    Authors: Alejandro Reyes, Matthew Haynes, Nicole Hanson, Florent Angly, Andrew C. Heath, Forest Rohwer, Jeffrey I. Gordon - Nature 2010 cited by 1,230

  7. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

    Authors: Andrew L. Goodman, George Kallstrom, Jeremiah J. Faith, Alejandro Reyes, Aimée M. Moore, Gautam Dantas, Jeffrey I. Gordon - National Academy of Sciences, Proceedings of the National Academy of Sciences 2011 cited by 783

  8. Identification of Regulatory Networks in HSCs and Their Immediate Progeny via Integrated Proteome, Transcriptome, and DNA Methylome Analysis

    Authors: Nina Cabezas‐Wallscheid, Daniel Klimmeck, Jenny Hansson, Daniel B. Lipka, Alejandro Reyes, Qi Wang, Dieter Weichenhan, Amelie Lier, Lisa von Paleske, Simon Renders, Peer Wünsche, Petra Zeisberger, David Brocks, Lei Gu, Carl Herrmann, Simon Haas, Marieke Essers, Benedikt Brors, Roland Eils, Wolfgang Huber, Michael D. Milsom, Christoph Plass, Jeroen Krijgsveld, Andreas Trumpp - Cell stem cell 2014 cited by 550

  9. Four principles to establish a universal virus taxonomy

    Authors: Peter Simmonds, Evelien M. Adriaenssens, F. Murilo Zerbini, Nicola G. A. Abrescia, Pakorn Aiewsakun, Poliane Alfenas‐Zerbini, Yīmíng Bào, Jakub Barylski, Christian Drosten, Siobain Duffy, W. Paul Duprex, Bas E. Dutilh, Santiago F. Elena, María Laura García, Sandra Junglen, Aris Katzourakis, Eugene V. Koonin, Mart Krupovìč, Jens H. Kuhn, Amy J. Lambert, Elliot J. Lefkowitz, Małgorzata Łobocka, Cédric Lood, Jennifer Mahony, Jan P. Meier‐Kolthoff, Arcady Mushegian, Hanna M. Oksanen, Minna M. Poranen, Alejandro Reyes, David L. Robertson, Simon Roux, Luisa Rubino, Sead Sabanadzovic, Stuart G. Siddell, Tim Skern, Donald B. Smith, Matthew B. Sullivan, Nobuhiro Suzuki, Dann Turner, Koenraad Van Doorslaer, Anne‐Mieke Vandamme, Arvind Varsani, Nikos Vasilakis - PLoS Biology 2023 cited by 137

  10. Changing a Generation’s Way of Thinking: Teaching Computational Thinking Through Programming

    Authors: Francisco Buitrago Flórez, Rubby Casallas, Marcela Hernández, Alejandro Reyes, Silvia Restrepo, Giovanna Danies - Review of Educational Research 2017 cited by 340

  11. Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer

    Authors: Sarah E. Johnstone, Alejandro Reyes, Yifeng Qi, Carmen Adriaens, E. M. Hegazi, Karin Pelka, Jonathan Chen, Luli S. Zou, Yotam Drier, Vivian Hecht, Noam Shoresh, Martin K. Selig, Caleb A. Lareau, Sowmya Iyer, Son C. Nguyen, Eric F. Joyce, Nir Hacohen, Rafael A. Irizarry, Bin Zhang, Martin J. Aryee, B Bernstein - Cell 2020 cited by 255

  12. Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements

    Authors: Kathi Zarnack, Julian König, Mojca Tajnik, Iñigo Martincorena, Sebastian Eustermann, Isabelle Stévant, Alejandro Reyes, Simon Anders, Nicholas M. Luscombe, Jernej Ule - Cell 2013 cited by 508

  13. An orally available, brain penetrant, small molecule lowers huntingtin levels by enhancing pseudoexon inclusion

    Authors: Caroline Gubser Keller, Youngah Shin, Alex Mas Monteys, Nicole Renaud, Martin Beibel, Natalia Teider, Thomas Peters, Thomas Faller, Sophie St-Cyr, Judith Knehr, Guglielmo Roma, Alejandro Reyes, Marc Hild, Dmitriy Lukashev, Diethilde Theil, Natalie A. Dales, Jang‐Ho Cha, Beth Borowsky, Ricardo E. Dolmetsch, Beverly L. Davidson, Rajeev Sivasankaran - Nature Communications 2022 cited by 120

  14. A molecular glue degrader of the WIZ transcription factor for fetal hemoglobin induction

    Authors: Pamela Y. Ting, Sneha Borikar, John Ryan Kerrigan, Noel M. Thomsen, Eamon Aghania, Amelia E. Hinman, Alejandro Reyes, Nicolas Pizzato, Barna D. Fodor, Fabian Wu, Muluken S. Belew, Xiaohong Mao, Jian Wang, Shripad Chitnis, Wei Niu, Amanda Hachey, Jennifer Cobb, Nikolas A. Savage, Ashley Burke, Joshiawa Paulk, Dustin Dovala, James A. Lin, Matthew C. Clifton, Elizabeth Ornelas, Xiaolei Ma, Nathaniel F. Ware, Carina C. Sanchez, John A. Taraszka, Rémi Terranova, Judith Knehr, Marc Altorfer, S. Whitney Barnes, Rohan E. J. Beckwith, Jonathan M. Solomon, Natalie A. Dales, Andrew W. Patterson, J. Wagner, Tewis Bouwmeester, Glenn Dranoff, Susan C. Stevenson, James E. Bradner - Science 2024 cited by 85

  15. Myc Depletion Induces a Pluripotent Dormant State Mimicking Diapause

    Authors: Roberta Scognamiglio, Nina Cabezas‐Wallscheid, Marc Thier, Sandro Altamura, Alejandro Reyes, Áine M. Prendergast, Daniel Baumgärtner, Larissa S. Carnevalli, Ann Atzberger, Simon Haas, Lisa von Paleske, Thorsten Boroviak, Philipp Wörsdörfer, Marieke Essers, Ulrich Kloz, Robert N. Eisenman, Frank Edenhofer, Paul Bertone, Wolfgang Huber, Franciscus van der Hoeven, Austin Smith, Andreas Trumpp - Cell 2016 cited by 275

  16. Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins

    Authors: J. Leonardo Moreno-Gallego, Shao‐Pei Chou, Sara C. Di Rienzi, Julia K. Goodrich, Timothy D. Spector, Jordana T. Bell, Nicholas D. Youngblut, Ian Hewson, Alejandro Reyes, Ruth E. Ley - Cell Host & Microbe 2019 cited by 233

  17. Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

    Authors: Robert A. Edwards, Alejandro A. Vega, Holly M. Norman, Maria Cynthia Ohaeri, Kyle Levi, Elizabeth A. Dinsdale, Ondřej Cinek, Ramy K. Aziz, Katelyn McNair, Jeremy J. Barr, Kyle Bibby, Stan J. J. Brouns, Adrián Cazares, Patrick A. de Jonge, Christelle Desnues, Samuel L. Díaz‐Muñoz, Peter C. Fineran, Alexander Kurilshikov, Rob Lavigne, Karla Mazankova, David McCarthy, Franklin L. Nóbrega, Alejandro Reyes, German Tapia, Nicole Trefault, Alexander Tyakht, Pablo Vinuesa, Jeroen Wagemans, Alexandra Zhernakova, Frank M. Aarestrup, Gunduz Ahmadov, Abeer Alassaf, Josefa Anton, Abigail E. Asangba, E Billings, Vito Adrian Cantu, Jane M. Carlton, Daniel Cazares, Gyu-Sung Cho, Tess Condeff, Pilar Cortés, Mike Cranfield, Daniel Cuevas, Rodrigo De la Iglesia, Przemysław Decewicz, Michael P. Doane, Nathaniel J. Dominy, Łukasz Dziewit, Bashir Mukhtar Elwasila, A. Murat Eren, Charles M. A. P. Franz, Jingyuan Fu, Cristina García‐Aljaro, Elodie Ghedin, Kristen Gulino, John M. Haggerty, Steven R. Head, René S. Hendriksen, Colin Hill, Heikki Hyöty, Elena N. Ilina, Mitchell T. Irwin, Thomas C. Jeffries, Juan Jofre, Randall E. Junge, Scott T. Kelley, Mohammadali Khan Mirzaei, Martín M. Kowalewski, Deepak Kumaresan, Steven R. Leigh, David A. Lipson, Eugenia Lisitsyna, Montserrat Llagostera, Julia M. Maritz, Linsey C. Marr, Angela McCann, Shahar Molshanski-Mor, Sílvia Monteiro, Benjamin Moreira‐Grez, Megan M. Morris, Lawrence Mugisha, Maite Muniesa, Horst Neve, Nam Nguyen, Olivia D. Nigro, Anders Nilsson, Taylor O’Connell, Rasha Odeh, Andrew Oliver, Mariana Piuri, Aaron J. Prussin, Udi Qimron, Zhe‐Xue Quan, Petra Rainetová, Adán Andrés Ramírez Rojas, Raúl R. Raya, Kim Reasor, Gillian A. O. Rice, Alessandro Rossi, Ricardo Santos and 17 more - Nature Microbiology 2019 cited by 267

  18. Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues

    Authors: Alejandro Reyes, Wolfgang Huber - Nucleic Acids Research 2017 cited by 300

  19. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition

    Authors: Alejandro Reyes, Laura V. Blanton, Song Cao, Guoyan Zhao, Mark Manary, Indi Trehan, Michelle I. Smith, David Wang, Herbert W. Virgin, Forest Rohwer, Jeffrey I. Gordon - National Academy of Sciences, Proceedings of the National Academy of Sciences 2015 cited by 339

  20. Going viral: next-generation sequencing applied to phage populations in the human gut

    Authors: Alejandro Reyes, Nicholas P. Semenkovich, Katrine Whiteson, Forest Rohwer, Jeffrey I. Gordon - Nature Reviews Microbiology 2012 cited by 450

  21. Gnotobiotic mouse model of phage–bacterial host dynamics in the human gut

    Authors: Alejandro Reyes, Meng Wu, Nathan P. McNulty, Forest Rohwer, Jeffrey I. Gordon - National Academy of Sciences, Proceedings of the National Academy of Sciences 2013 cited by 377

  22. Bacteriophages playing nice: Lysogenic bacteriophage replication stable in the human gut microbiota

    Authors: Steven G. Sutcliffe, Alejandro Reyes, Corinne F. Maurice - iScience 2023 cited by 59

  23. Mining of Thousands of Prokaryotic Genomes Reveals High Abundance of Prophages with a Strictly Narrow Host Range

    Authors: Gamaliel López-Leal, Laura Carolina Camelo-Valera, Juan Manuel Hurtado-Ramírez, Jérôme Verleyen, Santiago Castillo‐Ramírez, Alejandro Reyes - mSystems 2022 cited by 82

  24. Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut

    Authors: Henning Seedorf, Nicholas W. Griffin, Vanessa K. Ridaura, Alejandro Reyes, Jiye Cheng, Federico E. Rey, Michelle I. Smith, Gabriel M. Simon, Rudolf H. Scheffrahn, Dagmar Woebken, Alfred M. Spormann, William Van Treuren, Luke K. Ursell, Megan Pirrung, Adam Robbins‐Pianka, Brandi L. Cantarel, Vincent Lombard, Bernard Henrissat, Rob Knight, Jeffrey I. Gordon - Cell 2014 cited by 381