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Kasper D. Hansen

Active 1969–2025

70
Papers
24,161
Citations
51
h-index
68
i10-index

Citations

Citations per year for Kasper D. Hansen1957: 1 citations1969: 1 citations1973: 2 citations1987: 2 citations1991: 2 citations1994: 1 citations1998: 1 citations2000: 1 citations2001: 1 citations2003: 6 citations2004: 2 citations2005: 2 citations2006: 4 citations2007: 3 citations2008: 2 citations2009: 10 citations2010: 49 citations2011: 116 citations2012: 192 citations2013: 237 citations2014: 281 citations2015: 325 citations2016: 391 citations2017: 424 citations2018: 468 citations2019: 1,102 citations2020: 1,110 citations2021: 1,118 citations2022: 911 citations2023: 687 citations2024: 938 citations2025: 430 citations2026: 21 citations1958–1968: no citations, so these years are not shown1970–1972: no citations, so these years are not shown1974–1986: no citations, so these years are not shown1988–1990: no citations, so these years are not shown1992–1993: no citations, so these years are not shown1995–1997: no citations, so these years are not shown1999: no citations, so this year is not shown2002: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 4,205 citing papers, 28.8% of this breakdownUnited Kingdom: 1,237 citing papers, 8.5% of this breakdownGermany: 1,026 citing papers, 7% of this breakdownChina: 886 citing papers, 6.1% of this breakdownCanada: 658 citing papers, 4.5% of this breakdownAustralia: 557 citing papers, 3.8% of this breakdownSpain: 502 citing papers, 3.4% of this breakdownNetherlands: 467 citing papers, 3.2% of this breakdownItaly: 452 citing papers, 3.1% of this breakdownFrance: 449 citing papers, 3.1% of this breakdownSwitzerland: 360 citing papers, 2.5% of this breakdownSweden: 341 citing papers, 2.3% of this breakdown
0%28.8%Other 23.7%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology64.8%
  • Medicine19.5%
  • Neuroscience3.5%
  • Immunology and Microbiology3.2%
  • Agricultural and Biological Sciences2.6%
  • Environmental Science1.8%
  • Other4.6%

Topics

  • Epigenetics and DNA Methylation12%
  • RNA modifications and cancer4.3%
  • Genomics and Chromatin Dynamics3.1%
  • Gene expression and cancer classification3%
  • Genomics and Phylogenetic Studies2.8%
  • Single-cell and spatial transcriptomics2.6%
  • Other72.2%

Coauthors

All papers

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  1. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

    Authors: Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry - Bioinformatics, Bioinform. 1969 cited by 4,845

  2. Orchestrating high-throughput genomic analysis with Bioconductor

    Authors: Wolfgang Huber, Vincent J. Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S. Carvalho, Héctor Corrada Bravo, Sean Davis, Laurent Gatto, Thomas Girke, Raphaël Gottardo, Florian Hahne, Kasper D. Hansen, Rafael A. Irizarry, Michael Lawrence, Michael I. Love, James W. MacDonald, Valerie Obenchain, Andrzej K. Oleś, Hervé Pagès, Alejandro Reyes, Paul Shannon, Gordon K. Smyth, Dan Tenenbaum, Levi Waldron, Martin Morgan - Nature Methods 2015 cited by 3,988

  3. Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi

    Authors: Jean-Philippe Fortin, Timothy Triche, Kasper D. Hansen - Bioinformatics, Bioinform. 2016 cited by 931

  4. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

    Authors: James H. Bullard, Elizabeth Purdom, Kasper D. Hansen, Sandrine Dudoit - BMC Bioinformatics, BMC Bioinform. 2010 cited by 1,786

  5. BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

    Authors: Kasper D. Hansen, Ben Langmead, Rafael A. Irizarry - Genome biology 2012 cited by 905

  6. Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

    Authors: Isac Lee, Roham Razaghi, Timothy Gilpatrick, Michael M. Molnar, Ariel Gershman, Norah Sadowski, Fritz J. Sedlazeck, Kasper D. Hansen, Jared T. Simpson, Winston Timp - Nature Methods 2020 cited by 245

  7. Removing technical variability in RNA-seq data using conditional quantile normalization

    Authors: Kasper D. Hansen, Rafael A. Irizarry, Zhijin Wu - Biostatistics 2012 cited by 668

  8. A mammalian methylation array for profiling methylation levels at conserved sequences

    Authors: A Arneson, Amin Haghani, Michael J. Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu, Emily Maciejewski, M. Yao, Caesar Z. Li, Ake T. Lu, Marco Morselli, Liudmilla Rubbi, Bret Barnes, Kasper D. Hansen, Wanding Zhou, Charles E. Breeze, Jason Ernst, Steve Horvath - Nature Communications 2022 cited by 215

  9. Functional normalization of 450k methylation array data improves replication in large cancer studies

    Authors: Jean-Philippe Fortin, Aurélie Labbe, Mathieu Lemire, Brent W. Zanke, Thomas J. Hudson, Elana J. Fertig, Celia M.T. Greenwood, Kasper D. Hansen - Genome biology 2014 cited by 1,009

  10. Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

    Authors: Michael C. Schatz, Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L. Grossman, Ira M. Hall, Kasper D. Hansen, Jonathan Lawson, Jeffrey T. Leek, Anne O’Donnell‐Luria, Stephen Mosher, Martin Morgan, Anton Nekrutenko, Brian D. O’Connor, Kevin Osborn, Benedict Paten, Candace Patterson, Frederick J. Tan, Casey Overby Taylor, Jennifer Vessio, Levi Waldron, Ting Wang, Kristin Wuichet, Alexander Baumann, Andrew Rula, Anton Kovalsy, C. Bernard, Derek Caetano-Anollés, Geraldine Van Der Auwera, Justin Canas, K. Ümit Yüksel, Kate Herman, Megan Taylor, Marianie Simeon, Michaël Baumann, Qi Wang, Robert Title, Ruchi Munshi, Sushma Chaluvadi, Valerie B Reeves, William Disman, Salin Thomas, Allie Hajian, Elizabeth Kiernan, Namrata Gupta, Trish Vosburg, Ludwig Geistlinger, Marcel Ramos, Sehyun Oh, Dave Rogers, Frances McDade, Mim Hastie, Nitesh Turaga, Alexander Ostrovsky, Alexandru Mahmoud, Dannon Baker, Dave Clements, Katherine E.L. Cox, Keith Suderman, Nataliya Kucher, Sergey Golitsynskiy, Samantha Zarate, Sarah J. Wheelan, Kai Kammers, Ana Stevens, Carolyn M. Hutter, Christopher Wellington, Elena M. Ghanaim, Ken Wiley, Shurjo K. Sen, Valentina Di Francesco, Deni s Yuen, Brian Walsh, Luke Sargent, Vahid Jalili, John Chilton, Lori Shepherd, Benjamin J. Stubbs, Ash O’Farrell, Benton A. Vizzier, Charles Overbeck, Charles Reid, David Steinberg, Elizabeth A. Sheets, Julian Lucas, Lon Blauvelt, Louise Cabansay, Noah Warren, Brian Hannafious, Tim Harris, Radhika Reddy, Eric S. Torstenson, M. Katie Banasiewicz, Haley Abel, Jason Walker - Cell Genomics 2022 cited by 130

  11. Universal prediction of cell-cycle position using transfer learning

    Authors: Shijie Zheng, Genevieve Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana L. Winer, Gloria Shin, Hans T. Björnsson, Loyal A. Goff, Kasper D. Hansen - Genome biology 2022 cited by 130

  12. Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data

    Authors: Jean-Philippe Fortin, Kasper D. Hansen - Genome biology 2015 cited by 370

  13. Increased methylation variation in epigenetic domains across cancer types

    Authors: Kasper D. Hansen, Winston Timp, Héctor Corrada Bravo, Sarven Sabunciyan, Ben Langmead, Oliver G. McDonald, Bo Wen, Hao Wu, Yun Liu, Dinh Diep, Eiríkur Briem, Kun Zhang, Rafael A. Irizarry, Andrew P. Feinberg - Nature Genetics 2011 cited by 1,094

  14. Reproducible RNA-seq analysis using recount2

    Authors: Leonardo Collado‐Torres, Abhinav Nellore, Kai Kammers, Shannon Ellis, Margaret A. Taub, Kasper D. Hansen, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek - Nature Biotechnology 2017 cited by 532

  15. Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates

    Authors: Shijie Zheng, Genevieve Stein-O’Brien, Leandros Boukas, Loyal A. Goff, Kasper D. Hansen - Genome biology 2023 cited by 64

  16. Linear models enable powerful differential activity analysis in massively parallel reporter assays

    Authors: Leslie Myint, Dimitrios Avramopoulos, Loyal A. Goff, Kasper D. Hansen - BMC Genomics 2019 cited by 464

  17. Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability

    Authors: Lindsay F. Rizzardi, Peter F. Hickey, Varenka Rodriguez DiBlasi, Rakel Tryggvadóttir, Colin M. Callahan, Adrian Idrizi, Kasper D. Hansen, Andrew P. Feinberg - Nature Neuroscience 2019 cited by 166

  18. Bacterial infection remodels the DNA methylation landscape of human dendritic cells

    Authors: Alain Pacis, Ludovic Tailleux, Alexander M. Morin, John Lambourne, Julia L. MacIsaac, Vania Yotova, Anne Dumaine, Anne Danckaert, Francesca Luca, Jean‐Christophe Grenier, Kasper D. Hansen, Brigitte Gicquel, Miao Yu, Athma A. Pai, Chuan He, Jenny Tung, Tomi Pastinen, Michael S. Kobor, Roger Piqué-Regi, Yoav Gilad, Luis B. Barreiro - Genome Research 2015 cited by 240

  19. Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing

    Authors: Michael J. Ziller, Kasper D. Hansen, Alexander Meissner, Martin J. Aryee - Nature Methods 2014 cited by 329

  20. Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin

    Authors: Amy R. Vandiver, Rafael A. Irizarry, Kasper D. Hansen, Luis A. Garza, Árni Rafn Rúnarsson, Xin Li, Anna L. Chien, Timothy S. Wang, Sherry Leung, Sewon Kang, Andrew P. Feinberg - Genome Biology 2015 cited by 156

  21. Software for the Integration of Multiomics Experiments in Bioconductor

    Authors: Marcel Ramos, Lucas Schiffer, Angela Re, Rimsha Azhar, Azfar Basunia, Carmen Rodrı́guez, Tiffany Chan, Phil Chapman, Sean Davis, David Gómez-Cabrero, Aedín C. Culhane, Benjamin Haibe‐Kains, Kasper D. Hansen, Hanish Kodali, Marie S. Louis, Arvind Singh Mer, Markus Riester, Martin Morgan, Vince Carey, Levi Waldron - Cancer Research 2017 cited by 113

  22. Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver

    Authors: Xin Li, Yun Liu, Tal Salz, Kasper D. Hansen, Andrew P. Feinberg - Genome Research 2016 cited by 138

  23. Biases in Illumina transcriptome sequencing caused by random hexamer priming

    Authors: Kasper D. Hansen, Steven E. Brenner, Sandrine Dudoit - Nucleic Acids Research 2010 cited by 755

  24. Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children

    Authors: Xiumei Hong, Ke Hao, Christine Ladd‐Acosta, Kasper D. Hansen, Hui‐Ju Tsai, Xin Liu, Xin Xu, Timothy A. Thornton, Deanna Caruso, Corinne Keet, Yifei Sun, Guoying Wang, Wei Luo, Rajesh Kumar, Ramsay Fuleihan, Anne Marie Singh, Jennifer S. Kim, Rachel E. Story, Ruchi S. Gupta, Peisong Gao, Zhu Chen, Sheila O. Walker, Tami R. Bartell, Terri H. Beaty, M. Daniele Fallin, Robert P. Schleimer, Patrick G. Holt, Kari C. Nadeau, Robert A. Wood, Jacqueline A. Pongracic, Daniel E. Weeks, Xiaobin Wang - Nature Communications 2015 cited by 246