litlas
Log inCreate account

Jernej Ule

Active 2001–2025

120
Papers
24,743
Citations
76
h-index
116
i10-index

Citations

Citations per year for Jernej Ule1966: 1 citations1978: 4 citations1995: 4 citations1999: 1 citations2001: 4 citations2002: 9 citations2003: 8 citations2004: 25 citations2005: 34 citations2006: 57 citations2007: 93 citations2008: 68 citations2009: 115 citations2010: 122 citations2011: 185 citations2012: 342 citations2013: 325 citations2014: 401 citations2015: 415 citations2016: 437 citations2017: 469 citations2018: 497 citations2019: 1,061 citations2020: 1,061 citations2021: 1,250 citations2022: 955 citations2023: 851 citations2024: 1,314 citations2025: 708 citations2026: 38 citations1967–1977: no citations, so these years are not shown1979–1994: no citations, so these years are not shown1996–1998: no citations, so these years are not shown2000: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 3,350 citing papers, 28.8% of this breakdownChina: 1,530 citing papers, 13.2% of this breakdownUnited Kingdom: 1,022 citing papers, 8.8% of this breakdownGermany: 834 citing papers, 7.2% of this breakdownCanada: 413 citing papers, 3.6% of this breakdownItaly: 390 citing papers, 3.4% of this breakdownJapan: 376 citing papers, 3.2% of this breakdownSpain: 349 citing papers, 3% of this breakdownFrance: 329 citing papers, 2.8% of this breakdownAustralia: 290 citing papers, 2.5% of this breakdownSwitzerland: 246 citing papers, 2.1% of this breakdownNetherlands: 192 citing papers, 1.6% of this breakdown
0%28.8%Other 19.8%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology70.5%
  • Medicine19.6%
  • Neuroscience5.2%
  • Immunology and Microbiology1.7%
  • Agricultural and Biological Sciences1.3%
  • Computer Science0.7%
  • Other1%

Topics

  • RNA Research and Splicing16.4%
  • RNA modifications and cancer15.3%
  • RNA and protein synthesis mechanisms8.8%
  • Cancer-related molecular mechanisms research5.6%
  • Amyotrophic Lateral Sclerosis Research4.5%
  • Neurogenetic and Muscular Disorders Research3%
  • Other46.4%

Coauthors

All papers

Open in search
  1. TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A

    Authors: Anna‐Leigh Brown, Oscar G. Wilkins, Matthew J. Keuss, Sarah E. Hill, Matteo Zanovello, Weaverly Colleen Lee, Alexander Bampton, Flora Lee, Laura Masino, Yue Qi, Sam Bryce-Smith, Ariana Gatt, Martina Hallegger, Delphine Fagegaltier, Hemali Phatnani, Hemali Phatnani, Justin Kwan, Dhruv Sareen, James R. Broach, Zachary Simmons, Ximena Arcila-Londono, Edward B. Lee, Vivianna M. Van Deerlin, Neil A. Shneider, Ernest Fraenkel, Lyle W. Ostrow, Frank Baas, Noah Zaitlen, James D. Berry, Andrea Malaspina, Pietro Fratta, Gregory A. Cox, Leslie M. Thompson, Steven Finkbeiner, Efthimios Dardiotis, Timothy M. Miller, Siddharthan Chandran, Suvankar Pal, Eran Hornstein, Daniel J. MacGowan, Terry Heiman‐Patterson, Molly Hammell, Nikolaos A. Patsopoulos, Oleg Butovsky, Josh Dubnau, Avindra Nath, Robert Bowser, Matthew B. Harms, Eleonora Aronica, Mary Poss, Jennifer E. Phillips‐Cremins, John F. Crary, Nazem Atassi, Dale J. Lange, Darius J. Adams, Leonidas Stefanis, Marc Gotkine, Robert H. Baloh, Suma Babu, Towfique Raj, Sabrina Paganoni, Ophir Shalem, Colin Smith, Bin Zhang, Brent T. Harris, Iris Broce, Vivian E. Drory, John Ravits, Corey T. McMillan, Vilas Menon, Lani F. Wu, Steven J. Altschuler, Yossef Lerner, Rita Sattler, Kendall Van Keuren‐Jensen, Orit Rozenblatt–Rosen, Kerstin Lindblad‐Toh, Katharine Nicholson, Peter K. Gregersen, Jeong‐Ho Lee, Sulev Kõks, Stephen Muljo, Jia Newcombe, Emil K. Gustavsson, Sahba Seddighi, Joel F. Reyes, Steven L. Coon, Daniel M. Ramos, Giampietro Schiavo, Elizabeth Fisher, Towfique Raj, Maria Secrier, Tammaryn Lashley, Jernej Ule, Emanuele Buratti, Jack Humphrey, Michael E. Ward, Pietro Fratta - Nature 2022 cited by 514

  2. RNA modifications detection by comparative Nanopore direct RNA sequencing

    Authors: Adrien Léger, Paulo Amaral, Luca Pandolfini, Charlotte Capitanchik, Federica Capraro, Valentina Miano, Valentina Migliori, Patrick Toolan-Kerr, Theodora Sideri, Anton J. Enright, Konstantinos Tzelepis, Folkert J. van Werven, Nicholas M. Luscombe, Isaia Barbieri, Jernej Ule, Tomas Fitzgerald, Ewan Birney, Tommaso Leonardi, Tony Kouzarides - Nature Communications 2021 cited by 424

  3. CLIP and complementary methods

    Authors: Markus Hafner, Maria Katsantoni, Tino Köster, James Marks, Joyita Mukherjee, Dorothee Staiger, Jernej Ule, Mihaela Zavolan - Nature Reviews Methods Primers 2021 cited by 369

  4. Alternative Splicing Regulatory Networks: Functions, Mechanisms, and Evolution

    Authors: Jernej Ule, Benjamin J. Blencowe - Molecular Cell 2019 cited by 819

  5. Characterizing the RNA targets and position-dependent splicing regulation by TDP-43

    Authors: James Tollervey, Tomaž Curk, Boris Rogelj, Michael Briese, Matteo Cereda, Melis Kayikci, Julian König, Tibor Hortobágyi, Agnes L. Nishimura, Vera Župunski, Rickie Patani, Siddharthan Chandran, Gregor Rot, Blaž Zupan, Christopher E. Shaw, Jernej Ule - Nature Neuroscience 2011 cited by 1,189

  6. Mis-spliced transcripts generate de novo proteins in TDP-43–related ALS/FTD

    Authors: Sahba Seddighi, Yue Qi, Anna‐Leigh Brown, Oscar G. Wilkins, Colleen Bereda, Cédric Belair, Yong‐Jie Zhang, Mercedes Prudencio, Matthew J. Keuss, Aditya J Khandeshi, Sarah Pickles, Sarah E. Hill, James Hawrot, Daniel M. Ramos, Hebao Yuan, Jessica P. Roberts, Erika Kelmer Sacramento, Syed Islamuddin Shah, Mike A. Nalls, J Colon, Joel F. Reyes, Veronica H. Ryan, Matthew P. Nelson, Casey Cook, Ziyi Li, Laurel A. Screven, Justin Kwan, Puja R. Mehta, Matteo Zanovello, Martina Hallegger, Anantharaman Shantaraman, Lingyan Ping, Yuka Koike, Björn Oskarsson, Nathan P. Staff, Duc M. Duong, Aisha Ahmed, Maria Secrier, Jernej Ule, Steven Jacobson, Daniel S. Reich, Jonathan D. Rohrer, Andrea Malaspina, Dennis W. Dickson, Jonathan D. Glass, Alessandro Ori‬‬, Nicholas T. Seyfried, Manolis Maragkakis, Leonard Petrucelli, Pietro Fratta, Michael E. Ward - Science Translational Medicine 2024 cited by 158

  7. TDP-43 condensation properties specify its RNA-binding and regulatory repertoire

    Authors: Martina Hallegger, Anob M. Chakrabarti, Flora Lee, Bo Lim Lee, Aram Gustav Amalietti, Hana M. Odeh, Katie E. Copley, Jack D. Rubien, Bede Portz, Klara Kuret, Ina Huppertz, Frédérique Rau, Rickie Patani, Nicolas L. Fawzi, James Shorter, Nicholas M. Luscombe, Jernej Ule - Cell 2021 cited by 256

  8. Aberrant methylation of tRNAs links cellular stress to neuro‐developmental disorders

    Authors: Sandra Blanco, Sabine Dietmann, Joana V. Flores, Shobbir Hussain, Claudia Kutter, Peter Humphreys, Margus Lukk, Patrick Lombard, Lucas Treps, Martyna Popis, Stefanie Kellner, Sabine M. Hölter, Lillian Garrett, Wolfgang Wurst, Lore Becker, Thomas Klopstock, Helmut Fuchs, Valérie Gailus‐Durner, Martin Hrabě de Angelis, Ragnhildur Thóra Káradóttir, Mark Helm, Jernej Ule, Joseph G. Gleeson, Duncan T. Odom, Michaela Frye - The EMBO Journal 2014 cited by 634

  9. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

    Authors: Julian König, Kathi Zarnack, Gregor Rot, Tomaž Curk, Melis Kayikci, Blaž Zupan, Daniel J. Turner, Nicholas M. Luscombe, Jernej Ule - Nature Structural & Molecular Biology 2010 cited by 1,203

  10. NSun2-Mediated Cytosine-5 Methylation of Vault Noncoding RNA Determines Its Processing into Regulatory Small RNAs

    Authors: Shobbir Hussain, Abdulrahim A. Sajini, Sandra Blanco, Sabine Dietmann, Patrick Lombard, Yoichiro Sugimoto, Maike Paramor, Joseph G. Gleeson, Duncan T. Odom, Jernej Ule, Michaela Frye - Cell Reports 2013 cited by 606

  11. Molecular basis of UG-rich RNA recognition by the human splicing factor TDP-43

    Authors: Peter J. Lukavsky, D. Daujotyte, James Tollervey, Jernej Ule, Cristiana Stuani, Emanuele Buratti, Francisco E. Baralle, Fred F. Damberger, Frédéric H.‐T. Allain - Nature Structural & Molecular Biology 2013 cited by 419

  12. TDP‐43 regulates its mRNA levels through a negative feedback loop

    Authors: Youhna M. Ayala, Laura De Conti, S. Eréndira Avendaño‐Vázquez, Ashish Dhir, Maurizio Romano, Andrea D’Ambrogio, James Tollervey, Jernej Ule, Marco Baralle, Emanuele Buratti, Francisco E. Baralle - The EMBO Journal 2010 cited by 655

  13. HITS-CLIP yields genome-wide insights into brain alternative RNA processing

    Authors: Donny D. Licatalosi, Aldo Mele, John J. Fak, Jernej Ule, Melis Kayikci, Sung Wook, Tyson A. Clark, Anthony Schweitzer, John E. Blume, Xuning Wang, Jennifer C. Darnell, Robert B. Darnell - Nature 2008 cited by 1,418

  14. CLIP Identifies Nova-Regulated RNA Networks in the Brain

    Authors: Jernej Ule, Kirk B. Jensen, Matteo Ruggiu, Aldo Mele, Aljaž Ule, Robert B. Darnell - Science 2003 cited by 1,138

  15. The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency

    Authors: Alessandro Bertero, Stephanie Brown, Pedro Madrigal, Anna Osnato, Daniel Ortmann, Loukia Yiangou, Juned Kadiwala, Nina C. Hubner, Igor Ruiz de los Mozos, Christoph Sadée, An‐Sofie Lenaerts, Shota Nakanoh, Rodrigo A. Grandy, Edward Farnell, Jernej Ule, Hendrik G. Stunnenberg, Sasha Mendjan, Ludovic Vallier - Nature 2018 cited by 394

  16. Cytotoxic T-cells mediate exercise-induced reductions in tumor growth

    Authors: Helene Rundqvist, Pedro Veliça, Laura Barbieri, Paulo A. Gameiro, David Bargiela, Miloš Gojković, Sara Mijwel, Stefan Markus Reitzner, David Wulliman, Emil Ahlstedt, Jernej Ule, Arne Östman, Randall S. Johnson - eLife 2020 cited by 203

  17. The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes

    Authors: Dalibor Blažek, Jiří Kohoutek, Koen Bartholomeeusen, Eric Johansen, Petra Hulinková, Zeping Luo, Peter Cimermančič, Jernej Ule, B. Matija Peterlin - Genes & Development 2011 cited by 522

  18. Major Shifts in Glial Regional Identity Are a Transcriptional Hallmark of Human Brain Aging

    Authors: Lilach Soreq, Jamie Rose, Eyal Soreq, John Hardy, Daniah Trabzuni, Mark Cookson, Colin Smith, Mina Ryten, Rickie Patani, Jernej Ule - Cell Reports 2017 cited by 428

  19. Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements

    Authors: Kathi Zarnack, Julian König, Mojca Tajnik, Iñigo Martincorena, Sebastian Eustermann, Isabelle Stévant, Alejandro Reyes, Simon Anders, Nicholas M. Luscombe, Jernej Ule - Cell 2013 cited by 508

  20. Lessons from non-canonical splicing

    Authors: Christopher R. Sibley, Lorea Blázquez, Jernej Ule - Nature Reviews Genetics 2016 cited by 325

  21. Hexanucleotide Repeats in ALS/FTD Form Length-Dependent RNA Foci, Sequester RNA Binding Proteins, and Are Neurotoxic

    Authors: Youn‐Bok Lee, Han-Jou Chen, João Peres, Jorge Gomez-Deza, Jan Attig, Maja Štalekar, Claire Troakes, Agnes L. Nishimura, Emma L. Scotter, Caroline Vance, Yoshitsugu Adachi, Valentina Sardone, Jack W. Miller, Bradley Smith, Jean‐Marc Gallo, Jernej Ule, Frank Hirth, Boris Rogelj, Corinne Houart, Christopher E. Shaw - Cell Reports 2013 cited by 499

  22. The interaction of PRC2 with RNA or chromatin is mutually antagonistic

    Authors: Manuel Beltrán, Christopher M. Yates, Lenka Skalska, Marcus Dawson, Filipa P. Reis, Keijo Viiri, Cynthia L. Fisher, Christopher R. Sibley, Benjamin M. Foster, Till Bartke, Jernej Ule, Richard G. Jenner - Genome Research 2016 cited by 238

  23. Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition

    Authors: Miha Modic, Markus Grosch, Gregor Rot, Silvia Schirge, Tjaša Lepko, Tomohiro Yamazaki, Flora Lee, Ejona Rusha, Dmitry Shaposhnikov, Michael Z. Palo, Juliane Merl‐Pham, Davide Cacchiarelli, Boris Rogelj, Stefanie M. Hauck, Christian von Mering, Alexander Meissner, Heiko Lickert, Tetsuro Hirose, Jernej Ule, Micha Drukker - Molecular Cell 2019 cited by 140

  24. Subcytoplasmic location of translation controls protein output

    Authors: Ellen L. Horste, Mervin M. Fansler, Ting Cai, Xiuzhen Chen, Sibylle Mitschka, Gang Zhen, Flora Lee, Jernej Ule, Christine Mayr - Molecular Cell 2023 cited by 70