Ludovic Vallier
Active 1994–2025
- 99
- Papers
- 20,494
- Citations
- 66
- h-index
- 99
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology57.8%
- Medicine32.1%
- Engineering3.4%
- Immunology and Microbiology2.2%
- Neuroscience2.2%
- Agricultural and Biological Sciences0.6%
- Other1.7%
Topics
- Pluripotent Stem Cells Research12.1%
- CRISPR and Genetic Engineering6.9%
- 3D Printing in Biomedical Research4.1%
- Renal and related cancers3.1%
- Single-cell and spatial transcriptomics2.8%
- Liver physiology and pathology2.8%
- Other68.2%
Coauthors
- Daniel Ortmann15
- Roger A. Pedersen14
- Nicholas R. F. Hannan13
- Stephanie Brown13
- Fotios Sampaziotis10
- Alessandro Bertero9
- Alexander Ross9
- Pedro Madrigal9
- Daniele Muraro8
- Brandon T. Wesley7
- José Garcia‐Bernardo7
- Kourosh Saeb‐Parsy7
- Mariya Chhatriwala7
- Olivia Tysoe7
- Peter J. Rugg‐Gunn7
- Rute A. Tomaz7
- Adrian Kee Keong Teo6
- Anna Osnato6
- Carola Maria Morell6
- Daniel J. Gaffney6
- Matthias Zilbauer6
- Miguel Cardoso de Brito6
- Charis‐Patricia Segeritz5
- Imbisaat Geti5
All papers
- Cholangiocyte organoids can repair bile ducts after transplantation in the human liver
Authors: Fotios Sampaziotis, Daniele Muraro, Olivia Tysoe, Stephen J. Sawiak, Timothy E. Beach, Edmund Godfrey, Sara Upponi, Teresa Brevini, Brandon T. Wesley, José Garcia‐Bernardo, Krishnaa T. Mahbubani, Giovanni Canu, Richard L. Gieseck, Natalie Lie Berntsen, Victoria Mulcahy, Keziah Crick, Corrina Fear, Sharayne Robinson, Lisa Swift, Laure Gambardella, Johannes Bargehr, Daniel Ortmann, Stephanie Brown, Anna Osnato, Michael P. Murphy, Gareth Corbett, William Gelson, George Mells, Peter Humphreys, Susan Davies, Irum Amin, Paul Gibbs, Sanjay Sinha, Sarah A. Teichmann, Andrew J. Butler, Teik Choon See, Espen Melum, Christopher J.E. Watson, Kourosh Saeb‐Parsy, Ludovic Vallier - Science 2021 cited by 375
- Single-cell transcriptomic characterization of a gastrulating human embryo
Authors: Richard C. V. Tyser, Elmir Mahammadov, Shota Nakanoh, Ludovic Vallier, Antonio Scialdone, Shankar Srinivas - Nature 2021 cited by 461
- Building consensus on definition and nomenclature of hepatic, pancreatic, and biliary organoids
Authors: Ary Marsee, Floris J.M. Roos, Monique M.A. Verstegen, Ary Marsee, Floris J.M. Roos, Monique M.A. Verstegen, Hans Clevers, Ludovic Vallier, Takanori Takebe, Meritxell Huch, Weng Chuan Peng, Stuart J. Forbes, Frédéric Lemaigre, Eelco de Koning, Helmuth Gehart, Luc J. W. van der Laan, Bart Spee, Sylvia F. Boj, Pedro M. Baptista, Kerstin Schneeberger, Carol J. Soroka, Markus H. Heim, Sandro Nuciforo, Kenneth S. Zaret, Yoshimasa Saito, Matthias P. Lütolf, Vincenzo Cardinale, Ben Simons, Sven van IJzendoorn, Akihide Kamiya, Hiromi Chikada, Shuyong Wang, Seon Ju Mun, Myung Jin Son, Tamer T. Önder, James L. Boyer, Toshiro Sato, Nikitas Georgakopoulos, André Marcelo Conceição Meneses, Laura Broutier, Luke Boulter, Dominic Grün, Jan N.M. IJzermans, Benedetta Artegiani, Ruben van Boxtel, Ewart Kuijk, Guido Carpino, Gary Peltz, Jesús M. Bañales, Nancy Kwan Man, Luigi Aloia, Nicholas F. LaRusso, Gregory A. George, Casey A. Rimland, George C. Yeoh, Anne Grappin-Botton, Daniel E. Stange, Nicole Prior, Janina E. E. Tirnitz‐Parker, Emma Andersson, Chiara Braconi, Nicholas R. F. Hannan, Wei‐Yu Lu, Stephen C. Strom, Pau Sancho‐Bru, Shinichiro Ogawa, Vincenzo Corbo, Madeline A. Lancaster, Huili Hu, Sabine A. Fuchs, Delilah Hendriks, Helmuth Gehart, Eelco de Koning, Frédéric Lemaigre, Stuart J. Forbes, Weng Chuan Peng, Meritxell Huch, Takanori Takebe, Ludovic Vallier, Hans Clevers, Luc J. W. van der Laan, Bart Spee - Cell stem cell 2021 cited by 310
- GDF15 mediates the effects of metformin on body weight and energy balance
Authors: Anthony P. Coll, Michael Chen, Pranali Taskar, Debra Rimmington, Satish Patel, John A. Tadross, Irène Cimino, Ming Yang, Paul Welsh, Sam Virtue, Deborah A. Goldspink, Emily L. Miedzybrodzka, Adam R. Konopka, Raul Ruiz Esponda, Jeffrey Huang, Y. C. Loraine Tung, Sergio Rodríguez‐Cuenca, Rute A. Tomaz, Heather P. Harding, Audrey Melvin, Giles S.H. Yeo, David Preiss, Antonio Vidal‐Puig, Ludovic Vallier, K. Sreekumaran Nair, Nicholas J. Wareham, David Ron, Fiona M. Gribble, Frank Reimann, Naveed Sattar, David B. Savage, Bernard B. Allan, Stephen O’Rahilly - Nature 2019 cited by 570
- FXR inhibition may protect from SARS-CoV-2 infection by reducing ACE2
Authors: Teresa Brevini, Mailis Maes, Gwilym J. Webb, Binu V. John, Claudia Fuchs, Gustav Buescher, Lu Wang, C. Griffiths, Marnie L. Brown, William E. Scott, Pehuén Pereyra-Gerber, William Gelson, Stephanie Brown, Scott Dillon, Daniele Muraro, Joanne Sharp, Megan Neary, Helen Box, Lee Tatham, James P. Stewart, Paul Curley, Henry Pertinez, Sally Forrest, Petra Mlčochová, Sagar Varankar, Mahnaz Darvish-Damavandi, Victoria Mulcahy, Rhoda E. Kuc, Thomas Williams, James A. Heslop, Davide Rossetti, Olivia Tysoe, Vasileios Galanakis, Marta Vilà‐González, Thomas W. M. Crozier, Johannes Bargehr, Sanjay Sinha, Sara Upponi, Corrina Fear, Lisa Swift, Kourosh Saeb‐Parsy, Susan Davies, Axel Wester, Hannes Hagström, Espen Melum, Darran Clements, Peter Humphreys, Jo Herriott, Edyta Kijak, Helen Cox, Chloe Bramwell, Anthony Valentijn, Christopher J. R. Illingworth, Bassam Dahman, Dustin Bastaich, Raphaella Ferreira, Thomas Marjot, Eleanor Barnes, Andrew M. Moon, A. Sidney Barritt, Ravindra K. Gupta, Stephen Baker, Anthony P. Davenport, Gareth Corbett, Vassilis G. Gorgoulis, Simon J. A. Buczacki, Joo‐Hyeon Lee, Nicholas J. Matheson, Michael Trauner, Andrew J. Fisher, Paul Gibbs, Andrew J. Butler, Christopher J.E. Watson, George Mells, Gordon Dougan, Andrew Owen, Ansgar W. Lohse, Ludovic Vallier, Fotios Sampaziotis - Nature 2022 cited by 294
- Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease
Authors: Rasa Elmentaite, Alexander Ross, Kenny Roberts, Kylie R. James, Daniel Ortmann, Tomás Gomes, Komal Nayak, Elizabeth Tuck, Sophie Pritchard, Omer Ali Bayraktar, Robert Heuschkel, Ludovic Vallier, Sarah A. Teichmann, Matthias Zilbauer - Developmental Cell 2020 cited by 336
- Common genetic variation drives molecular heterogeneity in human iPSCs
Authors: Helena Kilpinen, Ângela Gonçalves, Andreas Leha, Vackar Afzal, Kaur Alasoo, Sofie Ashford, Sendu Bala, Dalila Bensaddek, Francesco Paolo Casale, Oliver J. Culley, Petr Danecek, Adam Faulconbridge, Peter W. Harrison, Annie Kathuria, Davis J. McCarthy, Shane McCarthy, Ruta Meleckyte, Yasin Memari, Nathalie Moens, Filipa Soares, Alice Mann, Ian Streeter, Chukwuma A. Agu, Alex Alderton, Rachel Nelson, Sarah Harper, Minal Patel, Alistair White, Sharad Patel, Laura Clarke, Reena Halai, Christopher M. Kirton, Anja Kolb‐Kokocinski, Philip L. Beales, Ewan Birney, Davide Danovi, Angus I. Lamond, Willem H. Ouwehand, Ludovic Vallier, Fiona M. Watt, Richard Durbin, Oliver Stegle, Daniel J. Gaffney - Nature 2017 cited by 654
- The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency
Authors: Alessandro Bertero, Stephanie Brown, Pedro Madrigal, Anna Osnato, Daniel Ortmann, Loukia Yiangou, Juned Kadiwala, Nina C. Hubner, Igor Ruiz de los Mozos, Christoph Sadée, An‐Sofie Lenaerts, Shota Nakanoh, Rodrigo A. Grandy, Edward Farnell, Jernej Ule, Hendrik G. Stunnenberg, Sasha Mendjan, Ludovic Vallier - Nature 2018 cited by 394
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
Authors: Anna Cuomo, Daniel D. Seaton, Davis J. McCarthy, Iker Martinez, Marc Jan Bonder, José Garcia‐Bernardo, Shradha Amatya, Pedro Madrigal, Abigail Isaacson, Florian Buettner, Andrew Knights, Kedar Nath Natarajan, Chukwuma A. Agu, Alex Alderton, Petr Danecek, Rachel Denton, Richard Durbin, Daniel J. Gaffney, Ângela Gonçalves, Reena Halai, Sarah Harper, Christopher M. Kirton, Anja Kolb‐Kokocinski, Andreas Leha, Shane McCarthy, Yasin Memari, Minal Patel, Ewan Birney, Francesco Paolo Casale, Laura Clarke, Peter W. Harrison, Helena Kilpinen, Ian Streeter, Davide Denovi, Ruta Meleckyte, Natalie Moens, Fiona M. Watt, Willem H. Ouwehand, Angus I. Lamond, Dalila Bensaddek, Philip L. Beales, Ludovic Vallier, John C. Marioni, Mariya Chhatriwala, Oliver Stegle - Nature Communications 2020 cited by 365
- Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids
Authors: Fotios Sampaziotis, Alexander W. Justin, Olivia Tysoe, Stephen J. Sawiak, Edmund Godfrey, Sara Upponi, Richard L. Gieseck, Miguel Cardoso de Brito, Natalie Lie Berntsen, María J Gómez-Vázquez, Daniel Ortmann, Loukia Yiangou, Alexander Ross, Johannes Bargehr, Alessandro Bertero, Mariëlle C. F. Zonneveld, Marianne Terndrup Pedersen, Matthias Pawlowski, Laura Valestrand, Pedro Madrigal, Nikitas Georgakopoulos, Negar Pirmadjid, Gregor Skeldon, John Casey, Wenmiao Shu, Paulina M. Materek, Kirsten E Snijders, Stephanie Brown, Casey A. Rimland, Ingrid Simonic, Susan Davies, Kim B. Jensen, Matthias Zilbauer, William Gelson, Graeme Alexander, Sanjay Sinha, Nicholas R. F. Hannan, Thomas A. Wynn, Tom H. Karlsen, Espen Melum, Athina E. Markaki, Kourosh Saeb‐Parsy, Ludovic Vallier - Nature Medicine 2017 cited by 294
- Single-cell atlas of human liver development reveals pathways directing hepatic cell fates
Authors: Brandon T. Wesley, Alexander Ross, Daniele Muraro, Zhichao Miao, Sarah H. Saxton, Rute A. Tomaz, Carola Maria Morell, Katherine Ridley, Ekaterini D. Zacharis, Sandra Petrus-Reurer, Judith Kraiczy, Krishnaa T. Mahbubani, Stephanie Brown, José Garcia‐Bernardo, Clara Alsinet, Daniel J. Gaffney, Dave Horsfall, Olivia Tysoe, Rachel A. Botting, Emily Stephenson, Dorin-Mirel Popescu, Sonya A. MacParland, Gary D. Bader, Ian D. McGilvray, Daniel Ortmann, Fotios Sampaziotis, Kourosh Saeb‐Parsy, Muzlifah Haniffa, Kelly R. Stevens, Matthias Zilbauer, Sarah A. Teichmann, Ludovic Vallier - Nature Cell Biology 2022 cited by 138
- Acquisition of epithelial plasticity in human chronic liver disease
Authors: Christopher Gribben, Vasileios Galanakis, Alexander Calderwood, Eleanor C Williams, Ruben Chazarra-Gil, Miguel Larraz, Carla Frau, Tobias Puengel, Adrien Guillot, Foad J. Rouhani, Krishnaa T. Mahbubani, Edmund Godfrey, Susan E. Davies, Emmanouil Athanasiadis, Kourosh Saeb‐Parsy, Frank Tacke, Michael Allison, Irina Mohorianu, Ludovic Vallier - Nature 2024 cited by 115
- Transplantation of Expanded Fetal Intestinal Progenitors Contributes to Colon Regeneration after Injury
Authors: Robert Fordham, Shiro Yui, Nicholas R. F. Hannan, Christoffer Soendergaard, Alison Madgwick, Pawel J. Schweiger, Ole Haagen Nielsen, Ludovic Vallier, Roger A. Pedersen, Tetsuya Nakamura, Mamoru Watanabe, Kim B. Jensen - Cell stem cell 2013 cited by 408
- Derivation of pluripotent epiblast stem cells from mammalian embryos
Authors: I. G. M. Brons, Lucy Smithers, Matthew Trotter, Peter J. Rugg‐Gunn, Bowen Sun, Susana M. Chuva de Sousa Lopes, Sarah Howlett, Amanda Clarkson, Lars Ährlund‐Richter, Roger A. Pedersen, Ludovic Vallier - Nature 2007 cited by 2,036
- The Cell-Cycle State of Stem Cells Determines Cell Fate Propensity
Authors: Siim Pauklin, Ludovic Vallier - Cell 2013 cited by 657
- Cell Culture
Authors: Charis-P. Segeritz, Ludovic Vallier - Elsevier eBooks 2017 cited by 177
- Regional Differences in Human Biliary Tissues and Corresponding In Vitro–Derived Organoids
Authors: Casey A. Rimland, Samantha Grace Tilson, Carola Maria Morell, Rute A. Tomaz, Wei‐Yu Lu, Simone E. Adams, Nikitas Georgakopoulos, Francisco Otaizo‐Carrasquero, Timothy G. Myers, John R. Ferdinand, Richard L. Gieseck, Fotios Sampaziotis, Olivia Tysoe, Alexander Ross, Judith Kraiczy, Brandon T. Wesley, Daniele Muraro, Matthias Zilbauer, Gabriel C. Oniscu, Nicholas R. F. Hannan, Stuart J. Forbes, Kourosh Saeb‐Parsy, Thomas A. Wynn, Ludovic Vallier - Hepatology 2020 cited by 109
- Cholangiocytes derived from human induced pluripotent stem cells for disease modeling and drug validation
Authors: Fotios Sampaziotis, Miguel Cardoso de Brito, Pedro Madrigal, Alessandro Bertero, Kourosh Saeb‐Parsy, Filipa Soares, E. Schrumpf, Espen Melum, Tom H. Karlsen, J. A. Bradley, William Gelson, Susan Davies, Alastair Baker, Arthur Kaser, Graeme Alexander, Nicholas R. F. Hannan, Ludovic Vallier - Nature Biotechnology 2015 cited by 395
- A single-cell comparison of adult and fetal human epicardium defines the age-associated changes in epicardial activity
Authors: Vincent Knight-Schrijver, Hongorzul Davaapil, Semih Bayraktar, Alexander Ross, Kazumasa Kanemaru, James Cranley, Monika Dabrowska, Minal Patel, Krzysztof Polański, Xiaoling He, Ludovic Vallier, Sarah A. Teichmann, Laure Gambardella, Sanjay Sinha - Nature Cardiovascular Research 2022 cited by 57
- Isolation and propagation of primary human cholangiocyte organoids for the generation of bioengineered biliary tissue
Authors: Olivia Tysoe, Alexander W. Justin, Teresa Brevini, Si Emma Chen, Krishnaa T. Mahbubani, Anna Katharina Frank, Hajer Zedira, Espen Melum, Kourosh Saeb‐Parsy, Athina E. Markaki, Ludovic Vallier, Fotios Sampaziotis - Nature Protocols 2019 cited by 122
- Human branching cholangiocyte organoids recapitulate functional bile duct formation
Authors: Floris J.M. Roos, Gilles van Tienderen, Haoyu Wu, Ignacio Bordeu, Dina Vinke, Laura Muñoz Albarinos, Kathryn Monfils, Sabrah Niesten, Ron Smits, Jorke Willemse, Oskar Rosmark, Gunilla Westergren‐Thorsson, Daniel J. Kunz, Maurice de Wit, Pim J. French, Ludovic Vallier, Jan N.M. IJzermans, Richárd Bártfai, Hendrik Marks, Benjamin D. Simons, Martin E. van Royen, Monique M.A. Verstegen, Luc J. W. van der Laan - Cell stem cell 2022 cited by 65
- An in vitro stem cell model of human epiblast and yolk sac interaction
Authors: Kirsty Mackinlay, Bailey A. T. Weatherbee, Viviane S. Rosa, Charlotte E. Handford, George R. Hudson, Tim Coorens, Lygia V. Pereira, Sam Behjati, Ludovic Vallier, Marta N. Shahbazi, Magdalena Zernicka‐Goetz - eLife 2021 cited by 53
- Senescence impairs successful reprogramming to pluripotent stem cells
Authors: Ana Banito, S. Tamir Rashid, Juan Carlos Acosta, SiDe Li, Carlos‐Filipe Pereira, Imbisaat Geti, Sandra Pinho, José Silva, Véronique Azuara, Martin J. Walsh, Ludovic Vallier, Jesús Gil - Genes & Development 2009 cited by 630
- Genome editing reveals a role for OCT4 in human embryogenesis
Authors: Norah M. E. Fogarty, Afshan McCarthy, Kirsten E Snijders, Benjamin E. Powell, Nada Kubikova, Paul Blakeley, Rebecca A. Lea, Kay Elder, Sissy E. Wamaitha, Daesik Kim, Valdone Maciulyte, Jens Kleinjung, Jin‐Soo Kim, Dagan Wells, Ludovic Vallier, Alessandro Bertero, James M. A. Turner, Kathy K. Niakan - Nature 2017 cited by 396
