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Bernard R. Brooks

Active 1962–2026

133
Papers
39,027
Citations
71
h-index
115
i10-index

Citations

Citations per year for Bernard R. Brooks1911: 1 citations1962: 3 citations1969: 1 citations1970: 1 citations1971: 1 citations1972: 3 citations1973: 2 citations1974: 4 citations1975: 1 citations1976: 1 citations1977: 2 citations1978: 1 citations1979: 3 citations1980: 6 citations1981: 4 citations1982: 7 citations1983: 6 citations1984: 11 citations1985: 22 citations1986: 23 citations1987: 32 citations1988: 41 citations1989: 39 citations1990: 51 citations1991: 84 citations1992: 84 citations1993: 94 citations1994: 103 citations1995: 127 citations1996: 154 citations1997: 200 citations1998: 199 citations1999: 184 citations2000: 196 citations2001: 192 citations2002: 268 citations2003: 236 citations2004: 260 citations2005: 338 citations2006: 279 citations2007: 344 citations2008: 356 citations2009: 469 citations2010: 348 citations2011: 360 citations2012: 292 citations2013: 291 citations2014: 284 citations2015: 297 citations2016: 250 citations2017: 209 citations2018: 233 citations2019: 607 citations2020: 633 citations2021: 648 citations2022: 557 citations2023: 398 citations2024: 642 citations2025: 321 citations2026: 41 citations1912–1961: no citations, so these years are not shown1963–1968: no citations, so these years are not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 4,738 citing papers, 37.6% of this breakdownChina: 861 citing papers, 6.8% of this breakdownGermany: 769 citing papers, 6.1% of this breakdownUnited Kingdom: 681 citing papers, 5.4% of this breakdownFrance: 571 citing papers, 4.5% of this breakdownIndia: 372 citing papers, 3% of this breakdownSwitzerland: 363 citing papers, 2.9% of this breakdownItaly: 341 citing papers, 2.7% of this breakdownJapan: 319 citing papers, 2.5% of this breakdownCanada: 268 citing papers, 2.1% of this breakdownSweden: 240 citing papers, 1.9% of this breakdownSpain: 236 citing papers, 1.9% of this breakdown
0%37.6%Other 22.6%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology52%
  • Computer Science10.2%
  • Medicine9.9%
  • Physics and Astronomy6.8%
  • Materials Science5.5%
  • Chemistry4.5%
  • Other11.1%

Topics

  • Protein Structure and Dynamics14.9%
  • Computational Drug Discovery Methods5.8%
  • Enzyme Structure and Function5.4%
  • Spectroscopy and Quantum Chemical Studies4.3%
  • Lipid Membrane Structure and Behavior3.1%
  • RNA and protein synthesis mechanisms3.1%
  • Other63.4%

Coauthors

All papers

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  1. Constant pressure molecular dynamics simulation: The Langevin piston method

    Authors: Scott E. Feller, Yuhong Zhang, Richard W. Pastor, Bernard R. Brooks - The Journal of Chemical Physics 1995 cited by 4,525

  2. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

    Authors: Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson, David J. States, S. Swaminathan, Martin Karplus - Journal of Computational Chemistry 1983 cited by 14,945

  3. P SI4 1.4: Open-source software for high-throughput quantum chemistry

    Authors: Daniel G. A. Smith, Lori A. Burns, Andrew C. Simmonett, Robert M. Parrish, Matthew Cole Schieber, Raimondas Galvelis, Peter Kraus, Holger Kruse, Roberto Di Remigio, Asem Alenaizan, Andrew M. James, Susi Lehtola, Jonathon P. Misiewicz, Maximilian Scheurer, Robert A. Shaw, Jeffrey B. Schriber, Yi Xie, Zachary L. Glick, Dominic A. Sirianni, Joseph O'Brien, Jonathan M. Waldrop, Ashutosh Kumar, Edward G. Hohenstein, Benjamin P. Pritchard, Bernard R. Brooks, Henry F. Schaefer, Alexander Yu. Sokolov, Konrad Patkowski, A. Eugene DePrince, Uğur Bozkaya, Rollin A. King, Francesco A. Evangelista, Justin M. Turney, T. Daniel Crawford, C. David Sherrill - The Journal of Chemical Physics 2020 cited by 1,001

  4. Langevin dynamics of peptides: The frictional dependence of isomerization rates of N‐acetylalanyl‐N′‐methylamide

    Authors: Richard J. Loncharich, Bernard R. Brooks, Richard W. Pastor - Biopolymers 1992 cited by 1,199

  5. OpenMM 7: Rapid development of high performance algorithms for molecular dynamics

    Authors: Peter K. Eastman, Jason M. Swails, John D. Chodera, Robert McGibbon, Yutong Zhao, Kyle Beauchamp, Lee-Ping Wang, Andrew C. Simmonett, Matthew P. Harrigan, Chaya D. Stern, Rafal P. Wiewiora, Bernard R. Brooks, Vijay S. Pande - PLoS Computational Biology, PLoS Comput. Biol. 2016 cited by 2,763

  6. Albumin-chaperoned cyanine dye yields superbright NIR-II fluorophore with enhanced pharmacokinetics

    Authors: Rui Tian, Qiao Zeng, Shoujun Zhu, Joseph Lau, Swati Chandra, Robert Ertsey, Kenneth S. Hettie, Nutte Teraphongphom, Zhubin Hu, Gang Niu, Dale O. Kiesewetter, Haitao Sun, Xiaodong Zhang, Alexander L. Antaris, Bernard R. Brooks, Xiaoyuan Chen - Science Advances 2019 cited by 261

  7. An analysis of the accuracy of Langevin and molecular dynamics algorithms

    Authors: Richard W. Pastor, Bernard R. Brooks, Attila Szabó - Molecular Physics 1988 cited by 1,072

  8. New Spherical-Cutoff Methods for Long-Range Forces in Macromolecular Simulation

    Authors: Peter J. Steinbach, Bernard R. Brooks - Journal of Computational Chemistry, J. Comput. Chem. 1994 cited by 1,163

  9. Solvent-Induced Forces between Two Hydrophilic Groups

    Authors: Stewart R. Durell, Bernard R. Brooks, Arieh Ben‐Naim - The Journal of Physical Chemistry 1994 cited by 614

  10. A protocol for preparing explicitly solvated systems for stable molecular dynamics simulations

    Authors: Daniel R. Roe, Bernard R. Brooks - The Journal of Chemical Physics 2020 cited by 104

  11. CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed

    Authors: Wonmuk Hwang, Steven L. Austin, Arnaud Blondel, Eric D. Boittier, Stefan Boresch, Matthias Buck, Joshua Buckner, Amedeo Caflisch, Hao-Ting Chang, Xi Cheng, Yeol Kyo Choi, Jhih‐Wei Chu, Michael F. Crowley, Qiang Cui, A. Damjanović, Yuqing Deng, M. Devereux, Xinqiang Ding, Michael Feig, Jiali Gao, David R. Glowacki, James E. Gonzales, Mehdi Bagheri Hamaneh, Edward Harder, Ryan L. Hayes, Jing Huang, Yandong Huang, Phillip S. Hudson, Wonpil Im, Shahidul M. Islam, Wei Jiang, Michael R. Jones, Silvan Käser, Fiona L. Kearns, Nathan R. Kern, Jeffery B. Klauda, Themis Lazaridis, Jinhyuk Lee, Justin A. Lemkul, Xiaorong Liu, Yun Luo, Alexander D. MacKerell, Dan Thomas Major, Markus Meuwly, Kwangho Nam, Lennart Nilsson, Victor Ovchinnikov, Emanuele Paci, Soohyung Park, Richard W. Pastor, Amanda R. Pittman, Carol Beth Post, Samarjeet Prasad, Jingzhi Pu, Yifei Qi, Thenmalarchelvi Rathinavelan, Daniel R. Roe, Benoı̂t Roux, Christopher N. Rowley, Jana Shen, Andrew C. Simmonett, Alexander J. Sodt, Kai Töpfer, Meenu Upadhyay, Arjan van der Vaart, Luis Itza Vazquez-Salazar, Richard M. Venable, Luke Warrensford, H. Lee Woodcock, Yujin Wu, Charles L. Brooks, Bernard R. Brooks, Martin Karplus - The Journal of Physical Chemistry B 2024 cited by 114

  12. GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomolecules

    Authors: Mahdi Ghorbani, Samarjeet Prasad, Jeffery B. Klauda, Bernard R. Brooks - The Journal of Chemical Physics 2022 cited by 48

  13. CHARMM36 Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for Phosphatidylethanolamine, Phosphatidylglycerol, and Ether Lipids

    Authors: Yalun Yu, Andreas Krämer, Richard M. Venable, Bernard R. Brooks, Jeffery B. Klauda, Richard W. Pastor - Journal of Chemical Theory and Computation 2021 cited by 116

  14. A compression strategy for particle mesh Ewald theory

    Authors: Andrew C. Simmonett, Bernard R. Brooks - The Journal of Chemical Physics 2021 cited by 95

  15. Effects of pH on Proteins: Predictions for Ensemble and Single-Molecule Pulling Experiments

    Authors: Edward P. O’Brien, Bernard R. Brooks, D. Thirumalai - Journal of the American Chemical Society 2011 cited by 115

  16. Self-guided Langevin dynamics simulation method

    Authors: Xiongwu Wu, Bernard R. Brooks - Chemical Physics Letters 2003 cited by 465

  17. Semi-automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion

    Authors: Yalun Yu, Andreas Krämer, Richard M. Venable, Andrew C. Simmonett, Alexander D. MacKerell, Jeffery B. Klauda, Richard W. Pastor, Bernard R. Brooks - Journal of Chemical Theory and Computation 2021 cited by 78

  18. pH replica‐exchange method based on discrete protonation states

    Authors: Satoru Itoh, A. Damjanović, Bernard R. Brooks - Proteins Structure Function and Bioinformatics 2011 cited by 149

  19. Harmonic Analysis of Large Systems. I. Methodology

    Authors: Bernard R. Brooks, Dusanka Janezic, Martin Karplus - Journal of Computational Chemistry, J. Comput. Chem. 1995 cited by 497

  20. Optimization of quantum mechanical molecular mechanical partitioning schemes: Gaussian delocalization of molecular mechanical charges and the double link atom method

    Authors: Debananda Das, Kirsten P. Eurenius, Eric M. Billings, Paul Sherwood, David C. Chatfield, Milan Hodošček, Bernard R. Brooks - The Journal of Chemical Physics 2002 cited by 190

  21. Membrane permeability of small molecules from unbiased molecular dynamics simulations

    Authors: Andreas Krämer, An Ghysels, Eric Wang, Richard M. Venable, Jeffery B. Klauda, Bernard R. Brooks, Richard W. Pastor - The Journal of Chemical Physics 2020 cited by 70

  22. Computer simulation of liquid/liquid interfaces. I. Theory and application to octane/water

    Authors: Yuhong Zhang, Scott E. Feller, Bernard R. Brooks, Richard W. Pastor - The Journal of Chemical Physics 1995 cited by 375

  23. Simulations of Membranes and Other Interfacial Systems Using P21 and Pc Periodic Boundary Conditions

    Authors: Elizabeth A. Dolan, Richard M. Venable, Richard W. Pastor, Bernard R. Brooks - Biophysical Journal 2002 cited by 83

  24. Protein p K a Prediction by Tree-Based Machine Learning

    Authors: Ada Y. Chen, Juyong Lee, Ana Damjanović, Bernard R. Brooks - Journal of Chemical Theory and Computation 2022 cited by 36