David J. States
Active 1982–2014
- 60
- Papers
- 24,046
- Citations
- 33
- h-index
- 45
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology53%
- Computer Science12.1%
- Medicine8.9%
- Chemistry7.1%
- Physics and Astronomy4.9%
- Materials Science3.2%
- Other10.8%
Topics
- Protein Structure and Dynamics11.3%
- Enzyme Structure and Function4.6%
- Computational Drug Discovery Methods4.4%
- RNA and protein synthesis mechanisms3.8%
- Spectroscopy and Quantum Chemical Studies2.7%
- Genomics and Phylogenetic Studies1.9%
- Other71.3%
Coauthors
- Thomas W. Blackwell8
- Arvind Rao7
- James Douglas Engel7
- Alfred O. Hero III6
- Brian D. Athey6
- Lawrence Hunter6
- Pankaj Agarwal6
- Alexander S. Ade5
- Gilbert S. Omenn5
- H. V. Jagadish5
- Eric C. Rouchka4
- Warren Gish4
- Carlos Santos3
- Jing Gao3
- Martin Karplus3
- Nomi L. Harris3
- Rajasree Menon3
- V. Glenn Tarcea3
- Aaron Elkiss2
- Aaron V. Bookvich2
- Adriane Chapman2
- Allan Kuchinsky2
- Burkhard Rost2
- Christopher M. Dobson2
All papers
- CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
Authors: Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson, David J. States, S. Swaminathan, Martin Karplus - Journal of Computational Chemistry 1983 cited by 14,945
- CLO: The cell line ontology
Authors: Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He - Journal of Biomedical Semantics, J. Biomed. Semant. 2014 cited by 130
- SAGA: a subgraph matching tool for biological graphs
Authors: Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel - Bioinformatics, Bioinform. 2006 cited by 255
- Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly‐available database
Authors: Gilbert S. Omenn, David J. States, Marcin Adamski, Thomas W. Blackwell, Rajasree Menon, Henning Hermjakob, Rolf Apweiler, Brian B. Haab, Richard J. Simpson, James S. Eddes, Eugene A. Kapp, Robert L. Moritz, Daniel W. Chan, Alex J. Rai, Arie Admon, Ruedi Aebersold, Jimmy K. Eng, William S. Hancock, Stanley A. Hefta, Helmut E. Meyer, Young‐Ki Paik, Jong‐Shin Yoo, Peipei Ping, Joel G. Pounds, Joshua Adkins, Xiaohong Qian, Rong Wang, Valerie C. Wasinger, Chi Yue Wu, Xiaohang Zhao, Rong Zeng, Alexander I. Archakov, Akira Tsugita, Ilan Beer, Akhilesh Pandey, Michael Pisano, Philip Andrews, Harald Tammen, David W. Speicher, Samir Hanash - PROTEOMICS 2005 cited by 792
- Identification of protein coding regions by database similarity search
Authors: Warren Gish, David J. States - Nature Genetics 1993 cited by 1,688
- GLay: community structure analysis of biological networks
Authors: Gang Su, Allan Kuchinsky, John H. Morris, David J. States, Fan Meng - Bioinformatics, Bioinform. 2010 cited by 295
- QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification
Authors: David J. States, Warren Gish - Journal of Computational Biology, J. Comput. Biol. 1994 cited by 150
- Blind men and elephants: What do citation summaries tell us about a research article?
Authors: Aaron Elkiss, Siwei Shen, Anthony Fader, Günes Erkan, David J. States, Dragomir R. Radev - Journal of the American Society for Information Science and Technology, J. Assoc. Inf. Sci. Technol. 2007 cited by 147
- Both Src-Dependent and -Independent Mechanisms Mediate Phosphatidylinositol 3-Kinase Regulation of Colony-Stimulating Factor 1-Activated Mitogen-Activated Protein Kinases in Myeloid Progenitors
Authors: Angel W.‐M. Lee, David J. States - Molecular and Cellular Biology 2000 cited by 100
- Gene Structure Prediction and Alternative Splicing Analysis Using Genomically Aligned ESTs
Authors: Zhengyan Kan, Eric C. Rouchka, Warren Gish, David J. States - Genome Research 2001 cited by 403
- SciMiner: web-based literature mining tool for target identification and functional enrichment analysis
Authors: Junguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman - Bioinformatics, Bioinform. 2009 cited by 91
- Metab2MeSH: annotating compounds with medical subject headings
Authors: Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn, Brian D. Athey, Alla Karnovsky - Bioinformatics, Bioinform. 2012 cited by 39
- Conformational model for binding site recognition by the E.coli MetJ transcription factor
Authors: Rongxiang Liu, Thomas W. Blackwell, David J. States - Bioinformatics, Bioinform. 2001 cited by 37
- Similarities in amino acid sequences of Aplysia ADP-ribosyl cyclase and human lymphocyte antigen CD38
Authors: David J. States, Timothy F. Walseth, Hon Cheung Lee - Trends in Biochemical Sciences 1992 cited by 230
- Structure of the human neutrophil elastase gene.
Authors: Hidekazu Takahashi, T. Nukiwa, Kentaro Yoshimura, C D Quick, David J. States, Mark Holmes, Jacqueline Whang‐Peng, Tor Knutsen, R G Crystal - Journal of Biological Chemistry 1988 cited by 137
- Information Enhancement Methods for Large Scale Sequence Analysis
Authors: Jean-Michel Claverie, David J. States - Computers & Chemistry, Comput. Chem. 1993 cited by 130
- Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together
Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip C. Andrews, Brian D. Athey, David J. States, H. V. Jagadish - Nucleic Acids Research, Nucleic Acids Res. 2006 cited by 125
- Using Directed Information to Build Biologically Relevant Influence Networks
Authors: Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel - Journal of Bioinformatics and Computational Biology, J. Bioinform. Comput. Biol. 2008 cited by 40
- The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome
Authors: Pankaj Agarwal, David J. States - ISMB 1994 cited by 40
- Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction
Authors: Carlos Santos, Daniela Eggle, David J. States - Computer applications in the biosciences, Bioinform. 2004 cited by 37
- A bioinformatics analysis of the cell line nomenclature
Authors: Sirarat Sarntivijai, Alexander S. Ade, Brian D. Athey, David J. States - Bioinformatics, Bioinform. 2008 cited by 32
- Compact Encoding Strategies for DNA Sequence Similarity Search
Authors: David J. States, Pankaj Agarwal - ISMB 1996 cited by 31
- Cytoscape ESP: simple search of complex biological networks
Authors: Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, David J. States - Bioinformatics, Bioinform. 2008 cited by 13
- A two-dimensional nuclear overhauser experiment with pure absorption phase in four quadrants
Authors: David J. States, R. A. Haberkorn, David Ruben - Journal of Magnetic Resonance (1969) 1982 cited by 2,576
