John Parkinson
Active 1928–2026
- 114
- Papers
- 22,073
- Citations
- 70
- h-index
- 102
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology46.8%
- Medicine15.6%
- Immunology and Microbiology9.1%
- Agricultural and Biological Sciences5.4%
- Environmental Science4.3%
- Neuroscience4.1%
- Other14.7%
Topics
- Bioinformatics and Genomic Networks6.9%
- Microbial Metabolic Engineering and Bioproduction2.3%
- Computational Drug Discovery Methods2.2%
- Protein Structure and Dynamics2.2%
- RNA and protein synthesis mechanisms2.1%
- Genomics and Phylogenetic Studies1.9%
- Other82.4%
Coauthors
- Xuejian Xiong14
- James D. Wasmuth9
- Andrew Emili8
- Lakshmipuram S. Swapna7
- Mark Blaxter7
- Michael E. Grigg7
- Nirvana Nursimulu7
- Sadhna Phanse7
- Shayan Sharif7
- José M. Peregrín-Alvarez6
- Graham L. Cromar5
- Jack Greenblatt5
- Stacy Hung5
- Ana Popovic4
- Cedoljub Bundalovic-Torma4
- David B. Guiliano4
- David S. Guttman4
- James Vlasblom4
- Jon P. Boyle4
- Matthew Berriman4
- Mohan Babu4
- Pauline W. Wang4
- Ralf Schmid4
- Adam J. Reid3
All papers
- Faecal metabolome and its determinants in inflammatory bowel disease
Authors: Arnau Vich Vila, Shixian Hu, Sergio Andreu‐Sánchez, Valerie Collij, Bernadien H. Jansen, Hannah E. Augustijn, Laura A. Bolte, Renate A.A.A. Ruigrok, Galeb Abu-Ali, Cosmas Giallourakis, J. Schneider, John Parkinson, Amal Al‐Garawi, Alexandra Zhernakova, Ranko Gaćeša, Jingyuan Fu, Rinse K. Weersma - Gut 2023 cited by 141
- Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
Authors: Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron Tikuisis, Thanuja Punna, José M. Peregrín-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan K. Beattie, Dawn P. Richards, Veronica Canadien, Atanas I. Lalev, Frank L. Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie Thompson, Gabe Musso, Peter St.Onge, Shaun Ghanny, Mandy Hiu Yi Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin K. O’Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack Greenblatt - Nature 2006 cited by 2,992
- Panorama of ancient metazoan macromolecular complexes
Authors: Cuihong Wan, Blake Borgeson, Sadhna Phanse, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham L. Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R.M. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili - Nature 2015 cited by 586
- Comparative genomics of the major parasitic worms
Authors: Avril Coghlan, James A. Cotton, Nancy Holroyd, Adam J. Reid, Diogo M. Ribeiro, Eleanor Stanley, Helen Beasley, Hayley M. Bennett, Stephen R. Doyle, Daria Gordon, Bhavana Harsha, Thomas Huckvale, Jane Lomax, Gabriel Rinaldi, Myriam Shafie, Alan Tracey, Matthew Berriman, Rahul Tyagi, Bruce A. Rosa, Kymberlie Hallsworth-Pepin, John Martin, Philip Ozersky, Xu Zhang, Makedonka Mitreva, Isheng Jason Tsai, Huei‐Mien Ke, Tzu‐Hao Kuo, Tracy J. Lee, Dominik R. Laetsch, Gaganjot Kaur, Georgios Koutsovoulos, Sujai Kumar, Mark Blaxter, Robin N. Beech, Tim A. Day, Nicolas J. Wheeler, Rick M. Maizels, Prudence Mutowo, Neil D. Rawlings, Kevin Howe, Andrew R. Leach, John Parkinson, Lakshmipuram S. Swapna, David W. Taylor, Mostafa Zamanian, Fiona Allan, Aidan M. Emery, Peter D. Olson, David Rollinson, Judith E. Allen, Kazuhito Asano, Simon A. Babayan, Eileen Devaney, Yvonne Harcus, Germanus S. Bah, Vincent N. Tanya, S.A. Bisset, Estela Castillo, Joseph A. Cook, Philip J. Cooper, Teresa Cruz‐Bustos, Antonio Osuna, Mercedes Gómez-Samblás, Carmen Cuéllar, Mark L. Eberhard, Keeseon S. Eom, John S. Gilleard, John M. Hawdon, Dolores E. Hill, Joseph F. Urban, Dante S. Zarlenga, Jane E. Hodgkinson, Benjamin L. Makepeace, Petr Horák, Martin Kalbe, Taisei Kikuchi, Jacqueline B. Matthews, Antonio Muro, Noel M. O’Boyle, F Partònò, Kenneth Pfarr, Pilar Foronda, Hiroshi Sato, Manuela Schnyder, Tomáš Scholz, Rafael Toledo, Lian-Chen Wang - Nature Genetics 2018 cited by 610
- Identification of a Functional Connectome for Long-Term Fear Memory in Mice
Authors: Anne L. Wheeler, Cátia M. Teixeira, Afra H. Wang, Xuejian Xiong, Natasa Kovacevic, Jason P. Lerch, Anthony Randal McIntosh, John Parkinson, Paul W. Frankland - PLoS Computational Biology, PLoS Comput. Biol. 2013 cited by 332
- Chemogenetic Interrogation of a Brain-wide Fear Memory Network in Mice
Authors: Gisella Vetere, Justin W. Kenney, Lina Tran, Frances Xia, Patrick E. Steadman, John Parkinson, Sheena A. Josselyn, Paul W. Frankland - Neuron 2017 cited by 309
- Interaction network containing conserved and essential protein complexes in Escherichia coli
Authors: Gareth Butland, José M. Peregrín-Alvarez, Joyce Li, Wehong Yang, Xiaochun Yang, Veronica Canadien, Andrei Starostine, Dawn P. Richards, Bryan K. Beattie, Nevan J. Krogan, Michael Davey, John Parkinson, Jack Greenblatt, Andrew Emili - Nature 2005 cited by 1,211
- The genomes of four tapeworm species reveal adaptations to parasitism
Authors: Isheng Jason Tsai, Magdalena Zarowiecki, Nancy Holroyd, Alejandro Garcíarrubio, Alejandro Sánchez‐Flores, Karen Brooks, Alan Tracey, Raúl J. Bobes, Gladis Fragoso, Edda Sciutto, Martin Aslett, Helen Beasley, Hayley M. Bennett, Jianping Cai, Federico Camicia, Richard Clark, Marcela Cucher, Nishadi De Silva, Tim A. Day, Peter Deplazes, Karel Estrada, Cecilia Fernández, Peter W. H. Holland, Junling Hou, Songnian Hu, Thomas Huckvale, Stacy Hung, Laura Kamenetzky, Jacqueline A. Keane, Ferenc Kiss, Uriel Koziol, Olivia J. Lambert, Kan Liu, Xuenong Luo, Yingfeng Luo, Natalia Macchiaroli, Sarah Nichol, Jordi Paps, John Parkinson, Natasha Pouchkina-Stantcheva, Nick Riddiford, Mara Cecília Rosenzvit, Gustavo Salinas, James D. Wasmuth, Mostafa Zamanian, Yadong Zheng, Xuepeng Cai, Xavier Soberón, Peter D. Olson, Juan Pedro Laclette, Klaus Brehm, Matthew Berriman - Nature 2013 cited by 821
- Blindly Controlled Magnetically Actuated Capsule for Noninvasive Sampling of the Gastrointestinal Microbiome
Authors: Peyman Shokrollahi, Yung Priscilla Lai, Samrand Rash Ahmadi, Victoria Stewart, Mohsen Mohammadigheisar, Lee‐Anne Huber, Naomi Matsuura, Anna Zavodni, John Parkinson, Eric Diller - IEEE/ASME Transactions on Mechatronics 2020 cited by 66
- Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality
Authors: Yue Jiang, Xuejian Xiong, Jayne S. Danska, John Parkinson - Microbiome 2016 cited by 180
- A systemic approach to deliberative democracy
Authors: Jane Mansbridge, James Bohman, Simone Chambers, Thomas Christiano, Archon Fung, John Parkinson, Dennis F. Thompson, Mark E. Warren - Cambridge University Press eBooks 2012 cited by 1,024
- Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes
Authors: Hernán Lorenzi, Asis Khan, Michael S. Behnke, Sivaranjani Namasivayam, Lakshmipuram S. Swapna, Michalis Hadjithomas, Svetlana Karamycheva, Deborah F. Pinney, Brian P. Brunk, James W. Ajioka, Daniel Ajzenberg, John C. Boothroyd, Jon P. Boyle, Marie‐Laure Dardé, Maria Alejandra Diaz‐Miranda, J. P. Dubey, Heather Fritz, Solange María Gennari, Brian D. Gregory, Kami Kim, Jeroen P. J. Saeij, Chunlei Su, Michael W. White, Xing‐Quan Zhu, Daniel K. Howe, Benjamin M. Rosenthal, Michael E. Grigg, John Parkinson, Liang Liu, Jessica C. Kissinger, David S. Roos, L. David Sibley - Nature Communications 2016 cited by 275
- Gut microbiota-mediated protection against influenza virus subtype H9N2 in chickens is associated with modulation of the innate responses
Authors: Alexander Yitbarek, Khaled Taha-Abdelaziz, Douglas C. Hodgins, Leah R. Read, Éva Nagy, J. Scott Weese, Jeff Caswell, John Parkinson, Shayan Sharif - Scientific Reports 2018 cited by 95
- BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain
Authors: Mohammad Reza Pourhaghighi, Peter E.A. Ash, Sadhna Phanse, Florian Goebels, Lucas ZhongMing Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed Taha Moutaoufik, Ramy Malty, Edyta Małolepsza, Kalliopi Tsafou, Aparna Nathan, Graham L. Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili - Cell Systems 2020 cited by 86
- Commensal gut microbiota can modulate adaptive immune responses in chickens vaccinated with whole inactivated avian influenza virus subtype H9N2
Authors: Alexander Yitbarek, Jake Astill, Douglas C. Hodgins, John Parkinson, Éva Nagy, Shayan Sharif - Vaccine 2019 cited by 51
- Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways
Authors: Mohan Babu, J. Javier Díaz-Mejía, James Vlasblom, Alla Gagarinova, Sadhna Phanse, Chris Graham, Fouad Yousif, Huiming Ding, Xuejian Xiong, Anaies Nazarians-Armavil, Md Alamgir, ARM Mehrab Ali, Oxana Pogoutse, Asaf Peer, Roland Arnold, Magali Michaut, John Parkinson, Ashkan Golshani, Chris Whitfield, Shoshana J. Wodak, Gabriel Moreno‐Hagelsieb, Jack Greenblatt, Andrew Emili - PLoS Genetics 2011 cited by 128
- IL-4 dependent alternatively-activated macrophages have a distinctive in vivo gene expression phenotype
Authors: P’ng Loke, Meera G. Nair, John Parkinson, David B. Guiliano, Mark Blaxter, Judith E. Allen - BMC Immunology 2002 cited by 326
- The conservation and evolutionary modularity of metabolism
Authors: José M. Peregrín-Alvarez, Chris Sanford, John Parkinson - Genome biology 2009 cited by 170
- Global landscape of cell envelope protein complexes in Escherichia coli
Authors: Mohan Babu, Cedoljub Bundalovic-Torma, Charles Calmettes, Sadhna Phanse, Qingzhou Zhang, Yue Jiang, Zoran Minić, Sun‐Young Kim, Jitender Mehla, Alla Gagarinova, Irina A. Rodionova, Ashwani Kumar, Hongbo Guo, Olga Kagan, Oxana Pogoutse, Hiroyuki Aoki, Viktor Deineko, J. Harry Caufield, Erik Holtzapple, Zhongge Zhang, Åke Västermark, Yogee Pandya, Christine Chieh-Lin Lai, M. El Bakkouri, Yogesh Hooda, Megha Shah, Dan Burnside, Mohsen Hooshyar, James Vlasblom, Sessandra V Rajagopala, Ashkan Golshani, Stefan Wuchty, Jack Greenblatt, Milton H. Saier, Peter Uetz, Trevor F. Moraes, John Parkinson, Andrew Emili - Nature Biotechnology 2017 cited by 147
- Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure
Authors: Angela E. Zou, Kerry Nadeau, Xuejian Xiong, Pauline W. Wang, Julia K. Copeland, Jee Yeon Lee, James St. Pierre, Maxine Ty, Billy Taj, John H. Brumell, David S. Guttman, Shayan Sharif, D.R. Korver, John Parkinson - Microbiome 2022 cited by 71
- MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities
Authors: Billy Taj, Mobolaji Adeolu, Xuejian Xiong, Jordan Ang, Nirvana Nursimulu, John Parkinson - Microbiome 2023 cited by 24
- Effects of therapeutic levels of dietary antibiotics on the cecal microbiome composition of broiler chickens
Authors: Seyed Hossien Kairmi, Khaled Taha-Abdelaziz, Alexander Yitbarek, Mehdi Sargolzaei, Heidi Spahany, Jake Astill, Bahram Shojadoost, Mohammadali Alizadeh, Raveendra R. Kulkarni, John Parkinson, Shayan Sharif - Poultry Science 2022 cited by 19
- Changes in the composition of the extracellular matrix in patellar tendinopathy
Authors: Samiric Tom, John Parkinson, Mirna Z. Ilic, Jill Cook, Julian A. Feller, Christopher J. Handley - Matrix Biology 2009 cited by 154
- Mapping and Measuring Deliberation
Authors: André Bächtiger, John Parkinson - Oxford University Press eBooks 2019 cited by 240
