Edward M. Marcotte
Active 1994–2025
- 158
- Papers
- 38,661
- Citations
- 89
- h-index
- 150
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology66.9%
- Medicine9.1%
- Chemistry4.6%
- Computer Science4%
- Neuroscience3.8%
- Agricultural and Biological Sciences3.7%
- Other7.9%
Topics
- Bioinformatics and Genomic Networks9.1%
- Machine Learning in Bioinformatics3.4%
- RNA and protein synthesis mechanisms3.3%
- Genomics and Phylogenetic Studies3.2%
- Gene expression and cancer classification2.5%
- Biomedical Text Mining and Ontologies2.5%
- Other76%
Coauthors
- Insuk Lee19
- Ophelia Papoulas17
- John B. Wallingford16
- Kevin Drew13
- Christine Vogel12
- Daniel R. Boutz12
- Andrew D. Ellington11
- Taejoon Kwon11
- Zhihua Li10
- Chanjae Lee9
- David Eisenberg9
- Caitlyn L McCafferty7
- Claire D. McWhite7
- Andrew P. Horton6
- Arun Ramani6
- Brendan M. Floyd6
- David W. Taylor6
- Jon M. Laurent6
- Shailesh V. Date6
- Sohyun Hwang6
- Todd O. Yeates6
- Alan M. Johnson5
- Eiru Kim5
- Eric V. Anslyn5
All papers
- Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
Authors: Christine Vogel, Edward M. Marcotte - Nature Reviews Genetics 2012 cited by 4,189
- Understudied proteins: opportunities and challenges for functional proteomics
Authors: Georg Kustatscher, Tom Collins, Anne‐Claude Gingras, Tiannan Guo, Henning Hermjakob, Trey Ideker, Kathryn S. Lilley, Emma Lundberg, Edward M. Marcotte, Markus Ralser, Juri Rappsilber - Nature Methods 2022 cited by 221
- Long-term neural and physiological phenotyping of a single human
Authors: Russell A. Poldrack, Timothy O. Laumann, Oluwasanmi Koyejo, Brenda Gregory, Ashleigh M. Hover, Mei-Yen Chen, Krzysztof J. Gorgolewski, Jeffrey J. Luci, Sung Jun Joo, Ryan L. Boyd, Scott Hunicke‐Smith, Zack B. Simpson, Thomas Caven, Vanessa Sochat, James M. Shine, Evan M. Gordon, Abraham Z. Snyder, Babatunde Adeyemo, Steven E. Petersen, David C. Glahn, Dean McKay, Joanne E. Curran, Harald H.H. Göring, Melanie A. Carless, John Blangero, Robert F. Dougherty, Alexander Leemans, Daniel A. Handwerker, Laurie Frick, Edward M. Marcotte, Jeanette A. Mumford - Nature Communications 2015 cited by 535
- The emerging landscape of single-molecule protein sequencing technologies
Authors: Javier A. Alfaro, Peggy R. Bohländer, Mingjie Dai, Mike Filius, Cecil J. Howard, Xander F. van Kooten, Shilo Ohayon, Adam Pomorski, Sonja Schmid, Aleksei Aksimentiev, Eric V. Anslyn, Georges Bedran, Chan Cao, Mauro Chinappi, Étienne Coyaud, Cees Dekker, Gunnar Dittmar, Nicholas Drachman, Rienk Eelkema, David R. Goodlett, Sébastien Hentz, Umesh Kalathiya, Neil L. Kelleher, Ryan Kelly, Zvi Kelman, Sung Hyun Kim, Bernhard Küster, David Rodríguez‐Larrea, Stuart Lindsay, Giovanni Maglia, Edward M. Marcotte, John P. Marino, Christophe Masselon, Michael Mayer, Patroklos Samaras, Kumar Sarthak, Lusia Sepiashvili, Derek Stein, Meni Wanunu, Mathias Wilhelm, Peng Yin, A. MELLER, Chirlmin Joo - Nature Methods 2021 cited by 362
- A Census of Human Soluble Protein Complexes
Authors: Pierre C. Havugimana, Traver Hart, Tamás Nepusz, Haixuan Yang, Andrei L. Turinsky, Zhihua Li, Peggy I. Wang, Daniel R. Boutz, Vincent Fong, Sadhna Phanse, Mohan Babu, Stephanie A. Craig, Pingzhao Hu, Cuihong Wan, James Vlasblom, V.-u.-N. Dar, Alexandr Bezginov, Greg Clark, Gabriel C. Wu, Shoshana J. Wodak, Elisabeth R.M. Tillier, Alberto Paccanaro, Edward M. Marcotte, Andrew Emili - Cell 2012 cited by 913
- HumanNet v3: an improved database of human gene networks for disease research
Authors: Chan Yeong Kim, Seungbyn Baek, Junha Cha, Sunmo Yang, Eiru Kim, Edward M. Marcotte, G. Traver Hart, Insuk Lee - Nucleic Acids Research, Nucleic Acids Res. 2021 cited by 138
- Global signatures of protein and mRNA expression levels
Authors: Raquel de Sousa Abreu, Luiz O. F. Penalva, Edward M. Marcotte, Christine Vogel - Molecular BioSystems 2009 cited by 1,275
- Panorama of ancient metazoan macromolecular complexes
Authors: Cuihong Wan, Blake Borgeson, Sadhna Phanse, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham L. Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R.M. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili - Nature 2015 cited by 586
- Genome evolution in the allotetraploid frog Xenopus laevis
Authors: Adam M. Session, Yoshinobu Uno, Taejoon Kwon, Jarrod Chapman, Atsushi Toyoda, Shuji Takahashi, Akimasa Fukui, Akira Hikosaka, Atsushi Suzuki, Mariko Kondo, Simon J. van Heeringen, Ian K. Quigley, Sven Heinz, Hajime Ogino, Haruki Ochi, Uffe Hellsten, Jessica B. Lyons, Oleg Simakov, Nicholas H. Putnam, Jonathan C. Stites, Yoko Kuroki, Toshiaki Tanaka, Tatsuo Michiue, Minoru Watanabe, Ozren Bogdanović, Ryan Lister, Γεώργιος Γεωργίου, Sarita Paranjpe, Ila van Kruijsbergen, Shengqiang Shu, Joseph W. Carlson, Tsutomu Kinoshita, Yuko Ohta, Shuuji Mawaribuchi, Jerry Jenkins, Jane Grimwood, Jeremy Schmutz, Therese Mitros, Sahar V. Mozaffari, Yutaka Suzuki, Yoshikazu Haramoto, Takamasa Yamamoto, Chiyo Takagi, Rebecca Heald, Kelly E. Miller, Christian Haudenschild, Jacob O. Kitzman, Takuya Nakayama, Yumi Izutsu, Jacques Robert, Joshua D. Fortriede, Kevin A. Burns, Vaneet Lotay, Kamran Karimi, Y. Yasuoka, Darwin S. Dichmann, Martin F. Flajnik, Douglas W. Houston, Jay Shendure, Louis DuPasquier, Peter D. Vize, Aaron M. Zorn, Michihiko Ito, Edward M. Marcotte, John B. Wallingford, Yuzuru Ito, Makoto Asashima, Naoto Ueno, Yoichi Matsuda, Gert Jan C. Veenstra, Asao Fujiyama, Richard M. Harland, Masanori Taira, Daniel S. Rokhsar - Nature 2016 cited by 1,058
- hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies
Authors: Kevin Drew, John B Wallingford, Edward M. Marcotte - Molecular Systems Biology 2021 cited by 151
- DIP: the Database of Interacting Proteins
Authors: Ioannis Xenarios, Danny W. Rice, Lukasz Salwínski, Marisa K. Baron, Edward M. Marcotte, David Eisenberg - Nucleic Acids Research, Nucleic Acids Res. 2000 cited by 1,142
- HumanNet v2: human gene networks for disease research
Authors: Sohyun Hwang, Chan Yeong Kim, Sunmo Yang, Eiru Kim, G. Traver Hart, Edward M. Marcotte, Insuk Lee - Nucleic Acids Research, Nucleic Acids Res. 2018 cited by 225
- Protein function in the post-genomic era
Authors: David Eisenberg, Edward M. Marcotte, Ioannis Xénarios, Todd O. Yeates - Nature 2000 cited by 763
- Highly parallel single-molecule identification of proteins in zeptomole-scale mixtures
Authors: Jagannath Swaminathan, Alexander A. Boulgakov, Erik T. Hernandez, Angela M. Bardo, J. Logan Bachman, Joseph Marotta, Amber M. Johnson, Eric V. Anslyn, Edward M. Marcotte - Nature Biotechnology 2018 cited by 228
- Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity
Authors: Jae Jin Kim, Seo Yun Lee, Fade Gong, Anna Battenhouse, Daniel R. Boutz, Aarti Bashyal, Samantha T. Refvik, Cheng-Ming Chiang, Blerta Xhemalçe, Tanya T. Paull, Jennifer S. Brodbelt, Edward M. Marcotte, Kyle M. Miller - Genes & Development 2019 cited by 145
- Flaws in evaluation schemes for pair-input computational predictions
Authors: Yungki Park, Edward M. Marcotte - Nature Methods 2012 cited by 217
- Characterising and Predicting Haploinsufficiency in the Human Genome
Authors: Ni Huang, Insuk Lee, Edward M. Marcotte, Matthew E. Hurles - PLoS Genetics 2010 cited by 686
- Sequence signatures and mRNA concentration can explain two‐thirds of protein abundance variation in a human cell line
Authors: Christine Vogel, Raquel de Sousa Abreu, Daijin Ko, Shu‐Yun Le, Bruce A. Shapiro, Suzanne Perea Burns, Devraj Sandhu, Daniel R. Boutz, Edward M. Marcotte, Luiz O. F. Penalva - Molecular Systems Biology 2010 cited by 630
- Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins
Authors: Shintaroh Kubo, Corbin Black, Ewa Joachimiak, Shun Kai Yang, Thibault Legal, Katya Peri, Ahmad Abdelzaher Zaki Khalifa, Avrin Ghanaeian, Caitlyn L McCafferty, Melissa Valente-Paterno, Chelsea De Bellis, Phuong M. Huynh, Zhe Fan, Edward M. Marcotte, Dorota Włoga, Khanh Huy Bui - Nature Communications 2023 cited by 120
- Prioritizing candidate disease genes by network-based boosting of genome-wide association data
Authors: Insuk Lee, U. Martin Blom, Peggy I. Wang, Jung Eun Shim, Edward M. Marcotte - Genome Research 2011 cited by 715
- Comparative experiments on learning information extractors for proteins and their interactions
Authors: Razvan C. Bunescu, Ruifang Ge, Rohit J. Kate, Edward M. Marcotte, Raymond J. Mooney, Arun K. Ramani, Yuk Wah Wong - Artificial Intelligence in Medicine, Artif. Intell. Medicine 2004 cited by 436
- Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
Authors: Matteo Pellegrini, Edward M. Marcotte, Michael J. Thompson, David Eisenberg, Todd O. Yeates - National Academy of Sciences, Proceedings of the National Academy of Sciences 1999 cited by 1,616
- Engineering Escherichia coli to see light
Authors: Anselm Levskaya, Aaron Chevalier, Jeffrey J. Tabor, Zachary Booth Simpson, Laura A. Lavery, Matthew Levy, Eric A. Davidson, Alexander D. Scouras, Andrew D. Ellington, Edward M. Marcotte, Christopher A. Voigt - Nature 2005 cited by 651
- Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation
Authors: Rammohan Narayanaswamy, Matthew Levy, Mark Tsechansky, Gwendolyn M. Stovall, Jeremy D. O’Connell, Jennifer A. Mirrielees, Andrew D. Ellington, Edward M. Marcotte - National Academy of Sciences, Proceedings of the National Academy of Sciences 2009 cited by 398
