Karl R. Clauser
Active 1991–2025
- 98
- Papers
- 26,750
- Citations
- 75
- h-index
- 96
- i10-index
Citations
Citation sources
Countries
Institutions
- Harvard University1.2%
- Broad Institute1%
- Massachusetts Institute of Technology0.6%
- Dana-Farber Cancer Institute0.6%
- Inserm0.5%
- Heidelberg University0.5%
- Other95.6%
Fields
- Biochemistry, Genetics and Molecular Biology41.5%
- Medicine31.6%
- Chemistry14.8%
- Immunology and Microbiology6.5%
- Neuroscience1.3%
- Engineering1.2%
- Other3.1%
Topics
- Advanced Proteomics Techniques and Applications6.2%
- Mass Spectrometry Techniques and Applications3.4%
- Immunotherapy and Immune Responses2.5%
- Metabolomics and Mass Spectrometry Studies2.5%
- Cancer Cells and Metastasis2.2%
- Cancer Immunotherapy and Biomarkers2.2%
- Other81%
Coauthors
- Steven A. Carr50
- D.R. Mani24
- Karsten Krug16
- Susan Klaeger15
- Michael A. Gillette14
- Philipp Mertins13
- Jennifer G. Abelin11
- Nir Hacohen11
- Shankha Satpathy11
- Siranush Sarkizova11
- Richard O. Hynes10
- Hasmik Keshishian9
- Henry Rodriguez9
- Song Cao9
- Alexandra Naba8
- Christopher R. Kinsinger8
- Derin B. Keskin8
- Yize Li8
- Bo Wen7
- David Fenyö7
- David I. Heiman7
- Jacob D. Jaffe7
- Namrata D. Udeshi7
- Yifat Geffen7
All papers
- Phenotype, specificity and avidity of antitumour CD8+ T cells in melanoma
Authors: Giacomo Oliveira, Kari Stromhaug, Susan Klaeger, Tomasz Kula, Dennie T. Frederick, Phuong M. Le, Juliet Forman, Teddy Huang, Shuqiang Li, Wandi Zhang, Qikai Xu, Nicoletta Cieri, Karl R. Clauser, Sachet A. Shukla, Donna Neuberg, Sune Justesen, Gavin MacBeath, Steven A. Carr, Edward F. Fritsch, Nir Hacohen, Moshe Sade-Feldman, Kenneth J. Livak, Genevieve M. Boland, Patrick A. Ott, Derin B. Keskin, Catherine J. Wu - Nature 2021 cited by 555
- Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
Authors: Michael A. Gillette, Shankha Satpathy, Song Cao, Saravana M. Dhanasekaran, Suhas Vasaikar, Karsten Krug, Francesca Petralia, Yize Li, Wen-Wei Liang, Boris Reva, Azra Krek, Jiayi Ji, Xiaoyu Song, Wenke Liu, Runyu Hong, Lijun Yao, Lili M. Blumenberg, Sara R. Savage, Michael C. Wendl, Bo Wen, Kai Li, Lauren C. Tang, Melanie A. MacMullan, Shayan C. Avanessian, M. Harry Kane, Chelsea J. Newton, MacIntosh Cornwell, Ramani Kothadia, Weiping Ma, Seungyeul Yoo, Rahul Mannan, Pankaj Vats, Chandan Kumar‐Sinha, Emily Kawaler, Tatiana Omelchenko, Antonio Colaprico, Yifat Geffen, Yosef E. Maruvka, Felipe da Veiga Leprevost, Maciej Wiznerowicz, Zeynep H. Gümüş, Rajwanth Veluswamy, Galen Hostetter, David I. Heiman, Matthew A. Wyczalkowski, Tara Hiltke, Mehdi Mesri, Christopher R. Kinsinger, Emily S. Boja, Gilbert S. Omenn, Arul M. Chinnaiyan, Henry Rodriguez, Qing Kay Li, Scott D. Jewell, Mathangi Thiagarajan, Gad Getz, Bing Zhang, David Fenyö, Kelly V. Ruggles, Marcin Cieślik, Ana I. Robles, Karl R. Clauser, Ramaswamy Govindan, Pei Wang, Alexey I. Nesvizhskii, Li Ding, D.R. Mani, Steven A. Carr, Alex Webster, Alicia Francis, Alyssa Charamut, Amanda G. Paulovich, Amy M. Perou, Andrew K. Godwin, Andrii Karnuta, Annette Marrero-Oliveras, Barbara Hindenach, Barbara L. Pruetz, Bartosz Kubisa, Brian Druker, Chet Birger, Corbin D. Jones, Dana R. Valley, Daniel C. Rohrer, Daniel Cui Zhou, Daniel W. Chan, David Chesla, David Clark, Dmitry Rykunov, Donghui Tan, Elena V. Ponomareva, Elizabeth R. Duffy, Eric Burks, Eric E. Schadt, Erik J. Bergstrom, Eugene Fedorov, Ewa P. Malc, George D. Wilson, Haiquan Chen, Halina Krzystek and 86 more - Cell 2020 cited by 852
- The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices
Authors: Alexandra Naba, Karl R. Clauser, Sebastian Hoersch, Hui Liu, Steven A. Carr, Richard O. Hynes - Molecular & Cellular Proteomics 2011 cited by 1,345
- Proteogenomics connects somatic mutations to signalling in breast cancer
Authors: NCI CPTAC, Philipp Mertins, D.R. Mani, Kelly V. Ruggles, Michael A. Gillette, Karl R. Clauser, Pei Wang, Xianlong Wang, Jana Qiao, Song Cao, Francesca Petralia, Emily Kawaler, Filip Mundt, Karsten Krug, Zhidong Tu, Jonathan T. Lei, Michael L. Gatza, Matthew D. Wilkerson, Charles M. Perou, Venkata Yellapantula, Kuan-lin Huang, Chenwei Lin, Michael D. McLellan, Ping Yan, Sherri R. Davies, R. Reid Townsend, Steven J. Skates, Jing Wang, Bing Zhang, Christopher R. Kinsinger, Mehdi Mesri, Henry Rodriguez, Li Ding, Amanda G. Paulovich, David Fenyö, Matthew J. Ellis, Steven A. Carr - Nature 2016 cited by 1,801
- Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
Authors: Suhas Vasaikar, Chen Huang, Xiaojing Wang, Vladislav Petyuk, Sara R. Savage, Bo Wen, Yongchao Dou, Yun Zhang, Zhiao Shi, Osama A. Arshad, Marina A. Gritsenko, Lisa J. Zimmerman, Jason McDermott, Therese RW Clauss, Ronald Moore, Rui Zhao, Matthew Monroe, Yi-Ting Wang, Matthew Chambers, Robbert J.C. Slebos, Ken S. Lau, Qianxing Mo, Li Ding, Matthew J. Ellis, Mathangi Thiagarajan, Christopher R. Kinsinger, Henry Rodriguez, Richard Smith, Karin Rodland, D.C. Liebler, Tao Liu, Bing Zhang, Akhilesh Pandey, Amanda G. Paulovich, Andrew N. Hoofnagle, D.R. Mani, Daniel W. Chan, David F. Ransohoff, David Fenyö, David L. Tabb, Douglas A. Levine, Emily S. Boja, Eric Kuhn, Forest M. White, Gordon A. Whiteley, Heng Zhu, Hui Zhang, Ie‐Ming Shih, Jasmin Bavarva, Jeffrey R. Whiteaker, Karen A. Ketchum, Karl R. Clauser, Kelly V. Ruggles, Kimberly Elburn, Linda I. Hannick, Mark A. Watson, Mauricio Oberti, Mehdi Mesri, Melinda E. Sanders, Melissa Borucki, Michael A. Gillette, M Snyder, Nathan Edwards, Negin Vatanian, Paul A. Rudnick, Peter B. McGarvey, Philip Mertins, R. Reid Townsend, Ratna R. Thangudu, Robert Rivers, Samuel Payne, Sherri R. Davies, Shuang Cai, Stephen E. Stein, Steven A. Carr, Steven J. Skates, Subha Madhavan, Tara Hiltke, Xian Chen, Yingming Zhao, Yue Wang, Zhen Zhang - Cell 2019 cited by 862
- Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
Authors: Karsten Krug, Eric J. Jaehnig, Shankha Satpathy, Lili M. Blumenberg, Alla Y. Karpova, Meenakshi Anurag, George Miles, Philipp Mertins, Yifat Geffen, Lauren C. Tang, David I. Heiman, Song Cao, Yosef E. Maruvka, Jonathan T. Lei, Chen Huang, Ramani Kothadia, Antonio Colaprico, Chet Birger, Jarey H. Wang, Yongchao Dou, Bo Wen, Zhiao Shi, Yuxing Liao, Maciej Wiznerowicz, Matthew A. Wyczalkowski, Xi Chen, Jacob J. Kennedy, Amanda G. Paulovich, Mathangi Thiagarajan, Christopher R. Kinsinger, Tara Hiltke, Emily S. Boja, Mehdi Mesri, Ana I. Robles, Henry Rodriguez, Thomas F. Westbrook, Li Ding, Gad Getz, Karl R. Clauser, David Fenyö, Kelly V. Ruggles, Bing Zhang, D.R. Mani, Steven A. Carr, Matthew J. Ellis, Michael A. Gillette, Shayan C. Avanessian, Shuang Cai, Daniel Chan, Xian Chen, Nathan Edwards, Andrew N. Hoofnagle, M. Harry Kane, Karen A. Ketchum, Eric Kuhn, Douglas A. Levine, Shunqiang Li, D.C. Liebler, Tao Liu, Jingqin Luo, Subha Madhavan, Christopher G. Maher, Jason McDermott, Peter B. McGarvey, Mauricio Oberti, Akhilesh Pandey, Samuel Payne, David F. Ransohoff, Robert Rivers, Karin Rodland, Paul A. Rudnick, Melinda E. Sanders, Kenna M. Shaw, Ie‐Ming Shih, Robbert J.C. Slebos, Richard Smith, M Snyder, Stephen E. Stein, David L. Tabb, Ratna R. Thangudu, Stefani N. Thomas, Yue Wang, Forest M. White, Jeffrey R. Whiteaker, Gordon A. Whiteley, Hui Zhang, Zhen Zhang, Yingming Zhao, Heng Zhu, Lisa J. Zimmerman - Cell 2020 cited by 575
- The extracellular matrix: Tools and insights for the “omics” era
Authors: Alexandra Naba, Karl R. Clauser, Huiming Ding, Charles A. Whittaker, Steven A. Carr, Richard O. Hynes - Matrix Biology 2015 cited by 1,044
- A proteogenomic portrait of lung squamous cell carcinoma
Authors: Shankha Satpathy, Karsten Krug, Pierre M. Jean Beltran, Sara R. Savage, Francesca Petralia, Chandan Kumar‐Sinha, Yongchao Dou, Boris Reva, M. Harry Kane, Shayan C. Avanessian, Suhas Vasaikar, Azra Krek, Jonathan T. Lei, Eric J. Jaehnig, Tatiana Omelchenko, Yifat Geffen, Erik J. Bergstrom, Vasileios Stathias, Karen E. Christianson, David I. Heiman, Marcin Cieślik, Song Cao, Xiaoyu Song, Jiayi Ji, Wenke Liu, Kai Li, Bo Wen, Yize Li, Zeynep H. Gümüş, Myvizhi Esai Selvan, Rama Soundararajan, Tanvi H. Visal, Maria Gabriela Raso, Edwin R. Parra, Özgün Babur, Pankaj Vats, Shankara Anand, Tobias Schraink, MacIntosh Cornwell, Fernanda Martins Rodrigues, Houxiang Zhu, Chia-Kuei Mo, Yuping Zhang, Felipe da Veiga Leprevost, Chen Huang, Arul M. Chinnaiyan, Matthew A. Wyczalkowski, Gilbert S. Omenn, Chelsea J. Newton, Stephan C. Schürer, Kelly V. Ruggles, David Fenyö, Scott D. Jewell, Mathangi Thiagarajan, Mehdi Mesri, Henry Rodriguez, Sendurai A. Mani, Namrata D. Udeshi, Gad Getz, James Suh, Qing Kay Li, Galen Hostetter, Paul K. Paik, Saravana M. Dhanasekaran, Ramaswamy Govindan, Li Ding, Ana I. Robles, Karl R. Clauser, Alexey I. Nesvizhskii, Pei Wang, Steven A. Carr, Bing Zhang, D.R. Mani, Michael A. Gillette, Alexander L. Green, Alfredo Molinolo, Alicia Francis, Amanda G. Paulovich, Andrii Karnuta, Antonio Colaprico, Barbara Hindenach, Barbara L. Pruetz, Bartosz Kubisa, Brian Druker, Carissa A. Huynh, Charles A. Goldthwaite, Chet Birger, Christopher R. Kinsinger, Corbin D. Jones, Dan Rohrer, Dana R. Valley, Daniel W. Chan, David Chesla, Donna E. Hansel, Elena V. Ponomareva, Elizabeth R. Duffy, Eric Burks, Eric E. Schadt, Eugene Fedorov, Eunkyung An and 62 more - Cell 2021 cited by 399
- Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells
Authors: Chenxi Tian, Karl R. Clauser, Daniel Öhlund, Steffen Rickelt, Ying Huang, Mala Gupta, D.R. Mani, Steven A. Carr, David A. Tuveson, Richard O. Hynes - National Academy of Sciences, Proceedings of the National Academy of Sciences 2019 cited by 432
- A large peptidome dataset improves HLA class I epitope prediction across most of the human population
Authors: Siranush Sarkizova, Susan Klaeger, Phuong M. Le, Letitia W. Li, Giacomo Oliveira, Hasmik Keshishian, Christina R. Hartigan, Wandi Zhang, David A. Braun, Keith L. Ligon, Pavan Bachireddy, Ioannis K. Zervantonakis, Jennifer M. Rosenbluth, Tamara Ouspenskaia, Travis Law, Sune Justesen, Jonathan Stevens, William J. Lane, Thomas Eisenhaure, Guang Lan Zhang, Karl R. Clauser, Nir Hacohen, Steven A. Carr, Catherine J. Wu, Derin B. Keskin - Nature Biotechnology 2019 cited by 540
- Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer
Authors: Tamara Ouspenskaia, Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet, Bo Li, Elena Christian, Binyamin A. Knisbacher, Phuong M. Le, Christina R. Hartigan, Hasmik Keshishian, Annie Apffel, Giacomo Oliveira, Wandi Zhang, Sarah Chen, Yuen Ting Chow, Zhe Ji, Irwin Jungreis, Sachet A. Shukla, Sune Justesen, Pavan Bachireddy, Manolis Kellis, Gad Getz, Nir Hacohen, Derin B. Keskin, Steven A. Carr, Catherine J. Wu, Aviv Regev - Nature Biotechnology 2021 cited by 302
- Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
Authors: Yifat Geffen, Shankara Anand, Yo Akiyama, Tomer M. Yaron, Yizhe Song, Jared L. Johnson, Akshay Govindan, Özgün Babur, Yize Li, Emily M. Huntsman, Liang-Bo Wang, Chet Birger, David I. Heiman, Qing Zhang, Mendy Miller, Yosef E. Maruvka, Nicholas J. Haradhvala, Anna Calinawan, Saveliy Belkin, Alexander Kerelsky, Karl R. Clauser, Karsten Krug, Shankha Satpathy, Samuel Payne, D.R. Mani, Michael A. Gillette, Saravana M. Dhanasekaran, Mathangi Thiagarajan, Mehdi Mesri, Henry Rodriguez, Ana I. Robles, Steven A. Carr, Alexander J. Lazar, François Aguet, Lewis C. Cantley, Li Ding, Gad Getz, Eunkyung An, Meenakshi Anurag, Jasmin Bavarva, Michael J. Birrer, Özgün Babur, Song Cao, Michele Ceccarelli, Daniel W. Chan, Arul M. Chinnaiyan, Hanbyul Cho, Shrabanti Chowdhury, Marcin Cieślik, Antonio Colaprico, Steven A. Carr, Felipe da Veiga Leprevost, Corbin Day, Marcin J. Domagalski, Yongchao Dou, Brian Druker, Nathan Edwards, Matthew J. Ellis, David Fenyö, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Sara J.C. Gosline, Zeynep H. Gümüş, Tara Hiltke, Runyu Hong, Galen Hostetter, Yingwei Hu, Chen Huang, Antonio Iavarone, Eric J. Jaehnig, Scott Jewel, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Iga Kołodziejczak, Chandan Kumar‐Sinha, Karsten Krug, Jonathan T. Lei, Wen-Wei Liang, Yuxing Liao, Caleb M. Lindgren, Tao Liu, Wenke Liu, Weiping Ma, Wilson McKerrow, Mehdi Mesri, D.R. Mani, Alexey I. Nesvizhskii, Chelsea J. Newton, Robert Oldroyd, Gilbert S. Omenn, Amanda G. Paulovich, Francesca Petralia, Pietro Pugliese, Boris Reva, Karin Rodland, Kelly V. Ruggles, Dmitry Rykunov and 32 more - Cell 2023 cited by 207
- Proteogenomic Characterization of Endometrial Carcinoma
Authors: Yongchao Dou, Emily Kawaler, Daniel Cui Zhou, Marina A. Gritsenko, Chen Huang, Lili M. Blumenberg, Alla Y. Karpova, Vladislav Petyuk, Sara R. Savage, Shankha Satpathy, Wenke Liu, Yige Wu, Chia‐Feng Tsai, Bo Wen, Zhi Li, Song Cao, Jamie Moon, Zhiao Shi, MacIntosh Cornwell, Matthew A. Wyczalkowski, Rosalie Chu, Suhas Vasaikar, Hua Zhou, Qingsong Gao, Ronald Moore, Kai Li, Sunantha Sethuraman, Matthew Monroe, Rui Zhao, David I. Heiman, Karsten Krug, Karl R. Clauser, Ramani Kothadia, Yosef E. Maruvka, Alexander R. Pico, Amanda E. Oliphant, Emily L. Hoskins, Samuel L. Pugh, Sean J.I. Beecroft, David W. Adams, Jonathan C. Jarman, Andy T. Kong, Hui-Yin Chang, Boris Reva, Yuxing Liao, Dmitry Rykunov, Antonio Colaprico, Xi Chen, Andrzej Czekański, Marcin Jędryka, Rafał Matkowski, Maciej Wiznerowicz, Tara Hiltke, Emily S. Boja, Christopher R. Kinsinger, Mehdi Mesri, Ana I. Robles, Henry Rodriguez, David G. Mutch, Katherine C. Fuh, Matthew J. Ellis, Deborah F. DeLair, Mathangi Thiagarajan, D.R. Mani, Gad Getz, Michael S. Noble, Alexey I. Nesvizhskii, Pei Wang, Matthew L. Anderson, Douglas A. Levine, Richard Smith, Samuel Payne, Kelly V. Ruggles, Karin Rodland, Li Ding, Bing Zhang, Tao Liu, David Fenyö, Anupriya Agarwal, Meenakshi Anurag, Dmitry M. Avtonomov, Chet Birger, Michael J. Birrer, Simina M. Boca, William Bocik, Uma Borate, Melissa Borucki, Meghan C. Burke, Shuang Cai, Anna Calinawan, Steven A. Carr, Sonya Carter, Patricia Castro, Sandra Cerda, Michelle Chaikin, Daniel W. Chan, Doug W. Chan, Alyssa Charamut, Feng Chen, Jin Chen and 118 more - Cell 2020 cited by 540
- Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
Authors: Philipp Mertins, Lauren C. Tang, Karsten Krug, David Clark, Marina A. Gritsenko, Lijun Chen, Karl R. Clauser, Therese RW Clauss, Punit Shah, Michael A. Gillette, Vladislav Petyuk, Stefani N. Thomas, D. R. Mani, Filip Mundt, Ronald Moore, Yingwei Hu, Rui Zhao, Michael Schnaubelt, Hasmik Keshishian, Matthew Monroe, Zhen Zhang, Namrata D. Udeshi, D.R. Mani, Sherri R. Davies, R. Reid Townsend, Daniel W. Chan, Richard Smith, Hui Zhang, Tao Liu, Steven A. Carr - Nature Protocols 2018 cited by 529
- Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
Authors: Chen Huang, Lijun Chen, Sara R. Savage, Rodrigo Vargas Eguez, Yongchao Dou, Yize Li, Felipe da Veiga Leprevost, Eric J. Jaehnig, Jonathan T. Lei, Bo Wen, Michael Schnaubelt, Karsten Krug, Xiaoyu Song, Marcin Cieślik, Hui-Yin Chang, Matthew A. Wyczalkowski, Kai Li, Antonio Colaprico, Qing Kay Li, David Clark, Yingwei Hu, Liwei Cao, Jianbo Pan, Yuefan Wang, Kyung-Cho Cho, Zhiao Shi, Yuxing Liao, Wen Jiang, Meenakshi Anurag, Jiayi Ji, Seungyeul Yoo, Daniel Cui Zhou, Wen-Wei Liang, Michael C. Wendl, Pankaj Vats, Steven A. Carr, D.R. Mani, Zhen Zhang, Jiang Qian, Xi S. Chen, Alexander R. Pico, Pei Wang, Arul M. Chinnaiyan, Karen A. Ketchum, Christopher R. Kinsinger, Ana I. Robles, Eunkyung An, Tara Hiltke, Mehdi Mesri, Mathangi Thiagarajan, Alissa M. Weaver, Andrew G. Sikora, Jan Lubiński, Małgorzata Wierzbicka, Maciej Wiznerowicz, Shankha Satpathy, Michael A. Gillette, George Miles, Matthew J. Ellis, Gilbert S. Omenn, Henry Rodriguez, Emily S. Boja, Saravana M. Dhanasekaran, Li Ding, Alexey I. Nesvizhskii, Adel K. El‐Naggar, Daniel W. Chan, Hui Zhang, Bing Zhang, Anupriya Agarwal, Matthew L. Anderson, Shayan C. Avanessian, Dmitry M. Avtonomov, Oliver F. Bathe, Chet Birger, Michael J. Birrer, Lili M. Blumenberg, William Bocik, Uma Borate, Melissa Borucki, Meghan C. Burke, Shuang Cai, Anna Calinawan, Sandra Cerda, Alyssa Charamut, Lin Chen, Shrabanti Chowdhury, Karl R. Clauser, Houston Culpepper, Tomasz Czernicki, Fulvio D’Angelo, Jacob Day, Stephanie Young, Emek Demir, Fei Ding, Marcin J. Domagalski, Joseph C. Dort, Brian Druker, Elizabeth R. Duffy, Maureen A. Dyer and 102 more - Cancer Cell 2021 cited by 380
- TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach
Authors: Jana Zecha, Shankha Satpathy, Tamara Kanashova, Shayan C. Avanessian, M. Harry Kane, Karl R. Clauser, Philipp Mertins, Steven A. Carr, Bernhard Küster - Molecular & Cellular Proteomics 2019 cited by 439
- Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction
Authors: Jennifer G. Abelin, Derin B. Keskin, Siranush Sarkizova, Christina R. Hartigan, Wandi Zhang, John Sidney, Jonathan Stevens, William J. Lane, Guang Lan Zhang, Thomas Eisenhaure, Karl R. Clauser, Nir Hacohen, Michael S. Rooney, Steven A. Carr, Catherine J. Wu - Immunity 2017 cited by 650
- Cancer proteogenomics: current impact and future prospects
Authors: D.R. Mani, Karsten Krug, Bing Zhang, Shankha Satpathy, Karl R. Clauser, Li Ding, Matthew J. Ellis, Michael A. Gillette, Steven A. Carr - Nature reviews. Cancer 2022 cited by 217
- MatrisomeDB: the ECM-protein knowledge database
Authors: Xinhao Shao, Isra N. Taha, Karl R. Clauser, Yu (Tom) Gao, Alexandra Naba - Nucleic Acids Research, Nucleic Acids Res. 2019 cited by 342
- MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins
Authors: Sarah E. Calvo, Karl R. Clauser, Vamsi K. Mootha - Nucleic Acids Research, Nucleic Acids Res. 2015 cited by 1,328
- Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics
Authors: Mathias Wilhelm, Daniel P. Zolg, Michael Graber, Siegfried Gessulat, Tobias Schmidt, Karsten Schnatbaum, Celina Schwencke-Westphal, Philipp Seifert, Niklas de Andrade Krätzig, Johannes Zerweck, Tobias Knaute, Eva Bräunlein, Patroklos Samaras, Ludwig Lautenbacher, Susan Klaeger, Holger Wenschuh, Roland Rad, Bernard Delanghe, Andreas Hühmer, Steven A. Carr, Karl R. Clauser, Angela M. Krackhardt, Ulf Reimer, Bernhard Küster - Nature Communications 2021 cited by 193
- Pan-cancer proteogenomics connects oncogenic drivers to functional states
Authors: Yize Li, Eduard Porta‐Pardo, Collin Tokheim, Matthew H. Bailey, Tomer M. Yaron, Vasileios Stathias, Yifat Geffen, Kathleen J. Imbach, Song Cao, Shankara Anand, Yo Akiyama, Wenke Liu, Matthew A. Wyczalkowski, Yizhe Song, Erik Storrs, Michael C. Wendl, Wubing Zhang, Mustafa Sibai, Victoria Ruiz‐Serra, Wen-Wei Liang, Nadezhda V. Terekhanova, Fernanda Martins Rodrigues, Karl R. Clauser, David I. Heiman, Qing Zhang, François Aguet, Anna Calinawan, Saravana M. Dhanasekaran, Chet Birger, Shankha Satpathy, Daniel Cui Zhou, Liang-Bo Wang, Jessika Baral, Jared L. Johnson, Emily M. Huntsman, Pietro Pugliese, Antonio Colaprico, Antonio Iavarone, Milan G. Chheda, Christopher J. Ricketts, David Fenyö, Samuel Payne, Henry Rodriguez, Ana I. Robles, Michael A. Gillette, Chandan Kumar‐Sinha, Alexander J. Lazar, Lewis C. Cantley, Gad Getz, Li Ding, Eunkyung An, Meenakshi Anurag, Jasmin Bavarva, Michael J. Birrer, Anna Calinawan, Michele Ceccarelli, Daniel W. Chan, Arul M. Chinnaiyan, Hanbyul Cho, Shrabanti Chowdhury, Marcin Cieślik, Felipe da Veiga Leprevost, Corbin Day, Marcin J. Domagalski, Yongchao Dou, Brian Druker, Nathan Edwards, Matthew J. Ellis, Myvizhi Esai Selvan, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Sara J.C. Gosline, Zeynep H. Gümüş, Tara Hiltke, Runyu Hong, Galen Hostetter, Yingwei Hu, Chen Huang, Emily M. Huntsman, Eric J. Jaehnig, Scott Jewel, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Iga Kołodziejczak, Jonathan T. Lei, Yuxing Liao, Caleb M. Lindgren, Tao Liu, Weiping Ma, Wilson McKerrow, Alexey I. Nesvizhskii, Chelsea J. Newton, Robert Oldroyd, Gilbert S. Omenn, Amanda G. Paulovich, Francesca Petralia, Boris Reva and 23 more - Cell 2023 cited by 111
- Noncanonical open reading frames encode functional proteins essential for cancer cell survival
Authors: John R. Prensner, Oana M. Enache, Victor Luria, Karsten Krug, Karl R. Clauser, Joshua M. Dempster, Amir Karger, Li Wang, Karolina Stumbraite, Vickie M. Wang, Ginevra Botta, Nicholas Lyons, Amy Goodale, Zohra Kalani, Briana Fritchman, Adam Brown, Douglas Alan, Thomas Green, Xiaoping Yang, Jacob D. Jaffe, Jennifer A. Roth, Federica Piccioni, Marc W. Kirschner, Zhe Ji, David E. Root, Todd R. Golub - Nature Biotechnology 2021 cited by 195
- What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?
Authors: John R. Prensner, Jennifer G. Abelin, Leron W. Kok, Karl R. Clauser, Jonathan M. Mudge, Jorge Ruiz‐Orera, Michal Bassani‐Sternberg, Robert L. Moritz, Eric W. Deutsch, Sebastiaan van Heesch - Molecular & Cellular Proteomics 2023 cited by 91
