Martin Vingron
Active 1989–2025
- 239
- Papers
- 37,503
- Citations
- 81
- h-index
- 179
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology62.9%
- Medicine16.5%
- Agricultural and Biological Sciences8.7%
- Computer Science3.1%
- Immunology and Microbiology2.5%
- Neuroscience1.7%
- Other4.6%
Topics
- Genomics and Phylogenetic Studies5.2%
- Genomics and Chromatin Dynamics4%
- Gene expression and cancer classification3.8%
- Bioinformatics and Genomic Networks3.7%
- RNA and protein synthesis mechanisms3.3%
- RNA Research and Splicing2.9%
- Other77.1%
Coauthors
- Stefan A. Haas20
- Stefan Mundlos15
- Bernd Timmermann12
- Robert Schöpflin12
- Ho-Ryun Chung11
- Hans Lehrach10
- Antje Krause9
- Diane E. Kovats9
- Lars Wittler9
- Marcel H. Schulz9
- Thomas Manke9
- Verena Heinrich9
- Anja von Heydebreck8
- Annemarie Poustka8
- Christoph Dieterich8
- Knut Reinert8
- Guillaume Andrey7
- Julia Lasserre7
- Jörg D. Hoheisel7
- Sven Rahmann7
- Daniel M. Ibrahim6
- Helge G. Roider6
- Matthias Heinig6
- Michael S. Waterman6
All papers
- Comprehensive genomic profiles of small cell lung cancer
Authors: Julie George, Jing Lim, Se Jin Jang, Yupeng Cun, Luka Ozretić, Gu Kong, Frauke Leenders, Xin Lü, Lynnette Fernandez‐Cuesta, Graziella Bosco, Christian Müller, Ilona Dahmen, Nadine S. Jahchan, Kwon-Sik Park, Dian Yang, Anthony N. Karnezis, Dedeepya Vaka, Angela Torres, Maia Segura‐Wang, Jan O. Korbel, Roopika Menon, Sung‐Min Chun, Deokhoon Kim, Matt Wilkerson, Neil Hayes, David Engelmann, Brigitte M. Pützer, Marc Bos, Sebastian Michels, Ignacija Vlašić, Danila Seidel, Berit Pinther, Philipp Schaub, Christian Becker, Janine Altmüller, Jun Yokota, Takashi Kohno, Reika Iwakawa, Koji Tsuta, Masayuki Noguchi, Thomas Muley, Hans Hoffmann, Philipp A. Schnabel, Iver Petersen, Yuan Chen, Alex Soltermann, Verena Tischler, Chang‐Min Choi, Yong‐Hee Kim, Pierre P. Massion, Yong Zou, Dragana J. Jovanović, Milica Kontić, Gavin Wright, Prudence A. Russell, Benjamin Solomon, Ina Koch, Michael Lindner, Lucia Anna Muscarella, Annamaria la Torre, John K. Field, Marko Jakopović, Jelena Knežević, Esmeralda Castaños‐Vélez, Luca Roz, Ugo Pastorino, O.T. Brustugun, Marius Lund‐Iversen, Erik Thunnissen, Jens Köhler, Martin Schüler, Johan Botling, Martin Sandelin, Montse Sánchez‐Céspedes, Helga B. Salvesen, Viktor Achter, Ulrich Lang, Magdalena Bogus, Peter M. Schneider, Thomas Zander, Sascha Ansén, Michael Hallek, Jürgen Wolf, Martin Vingron, Yasushi Yatabe, William D. Travis, Peter Nürnberg, Christian Reinhardt, Sven Perner, Lukas C. Heukamp, Reinhard Büttner, Stefan A. Haas, Élisabeth Brambilla, Martin Peifer, Julien Sage, Roman K. Thomas - Nature 2015 cited by 2,428
- Variance stabilization applied to microarray data calibration and to the quantification of differential expression
Authors: Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron - Bioinformatics, ISMB 2002 cited by 2,576
- The Translational Landscape of the Human Heart
Authors: Sebastiaan van Heesch, Franziska Witte, Valentin Schneider-Lunitz, Jana Felicitas Schulz, Eleonora Adami, Allison Faber, Marieluise Kirchner, Henrike Maatz, Susanne Blachut, Clara-Louisa Sandmann, Masatoshi Kanda, Catherine L. Worth, Sebastian Schäfer, Lorenzo Calviello, Rhys Merriott, Giannino Patone, Oliver Hummel, Emanuel Wyler, Benedikt Obermayer, Michael Benedikt Mücke, Eric L. Lindberg, Franziska Trnka, Sebastian Memczak, Marcel Schilling, Leanne E. Felkin, Paul J.R. Barton, Nicholas M. Quaife, Konstantinos Vanezis, Sebastian Diecke, Masaya Mukai, Nancy Mah, Su-Jun Oh, Armin Kurtz, Christoph Schramm, Dorothee Schwinge, Marcial Sebode, Magdaléna Harakaľová, Folkert W. Asselbergs, Aryan Vink, Roel A. de Weger, Sivakumar Viswanathan, Anissa A. Widjaja, Anna Gärtner-Rommel, Hendrik Milting, Cristobal G. dos Remedios, Christoph Knosalla, Philipp Mertins, Markus Landthaler, Martin Vingron, Wolfgang A. Linke, Jonathan G. Seidman, Christine E. Seidman, Nikolaus Rajewsky, Uwe Ohler, Stuart A. Cook, Norbert Hübner - Cell 2019 cited by 689
- IntAct: an open source molecular interaction database
Authors: Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler - Nucleic Acids Research, Nucleic Acids Res. 2003 cited by 1,039
- Functional dissection of the Sox9–Kcnj2 locus identifies nonessential and instructive roles of TAD architecture
Authors: Alexandra Despang, Robert Schöpflin, Martin Franke, Salaheddine Ali, Ivana Jerković, Christina Paliou, Wing-Lee Chan, Bernd Timmermann, Lars Wittler, Martin Vingron, Stefan Mundlos, Daniel M. Ibrahim - Nature Genetics 2019 cited by 340
- Formation of new chromatin domains determines pathogenicity of genomic duplications
Authors: Martin Franke, Daniel M. Ibrahim, Guillaume Andrey, Wibke Schwarzer, Verena Heinrich, Robert Schöpflin, Katerina Kraft, Rieke Kempfer, Ivana Jerković, Wing-Lee Chan, Malte Spielmann, Bernd Timmermann, Lars Wittler, Ingo Kurth, Paola Cambiaso, Orsetta Zuffardi, Gunnar Houge, Lindsay Lambie, Francesco Brancati, Ana Pombo, Martin Vingron, François Spitz, Stefan Mundlos - Nature 2016 cited by 734
- Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
Authors: Alvis Brāzma, Pascal Hingamp, John Quackenbush, Gavin Sherlock, Paul T. Spellman, C. J. Stoeckert, John Aach, Wilhelm Ansorge, Catherine A. Ball, Helen C. Causton, Terry Gaasterland, Patrick Glenisson, Frank C. P. Holstege, Irene F. Kim, Victor Markowitz, John C. Matese, Helen Parkinson, Alan J. Robinson, Uğis Sarkans, Steffen Schulze-Kremer, Jason Stewart, Ronald C. Taylor, Jaak Vilo, Martin Vingron - Nature Genetics 2001 cited by 4,106
- Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors
Authors: Julie George, Vonn Walter, Martin Peifer, Ludmil B. Alexandrov, Danila Seidel, Frauke Leenders, Lukas Maas, Christian Müller, Ilona Dahmen, Tiffany M. Delhomme, Maude Ardin, Noémie Leblay, Graham Byrnes, Ruping Sun, Aurélien de Reyniès, Anne McLeer‐Florin, Graziella Bosco, Florian Malchers, Roopika Menon, Janine Altmüller, Christian Becker, Peter Nürnberg, Viktor Achter, Ulrich Lang, Peter M. Schneider, Magdalena Bogus, Matthew G. Soloway, Matthew D. Wilkerson, Yupeng Cun, James McKay, Denis Moro‐Sibilot, Christian Brambilla, Sylvie Lantuéjoul, Nicolas Lemaître, Alex Soltermann, Walter Weder, Verena Tischler, Odd Terje Brustugun, Marius Lund‐Iversen, Åslaug Helland, Steinar Solberg, Sascha Ansén, Gavin Wright, Benjamin Solomon, Luca Roz, Ugo Pastorino, Iver Petersen, Joachim H. Clement, Jörg Sänger, Jürgen Wolf, Martin Vingron, Thomas Zander, Sven Perner, William D. Travis, Stefan A. Haas, Magali Olivier, Matthieu Foll, Reinhard Büttner, D. Neil Hayes, Élisabeth Brambilla, Lynnette Fernandez‐Cuesta, Roman K. Thomas - Nature Communications 2018 cited by 373
- Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Authors: Damir Baranas̆ić, Matthias Hörtenhuber, Piotr J. Balwierz, Tobias Zehnder, Abdul Kadir Mukarram, Chirag Nepal, Csilla Várnai, Yavor Hadzhiev, Ada Jiménez-González, Nan Li, Joseph W. Wragg, Fabio M. D’Orazio, Đorđe Relić, Mikhail Pachkov, Noèlia Díaz, Benjamín Hernández-Rodríguez, Zelin Chen, Marcus H. Stoiber, Michael X. Dong, Irene Stevens, Samuel E. Ross, Anne Eagle, Ryan Martin, Oluwapelumi Obasaju, Sepand Rastegar, Alison C. McGarvey, Wolfgang Kopp, Emily V. Chambers, Dennis Wang, Hyejeong R. Kim, Rafael D. Acemel, Silvia Naranjo, Maciej Łapiński, Vanessa Chong-Morrison, Sinnakaruppan Mathavan, Bernard Peers, Tatjana Sauka‐Spengler, Martin Vingron, Piero Carninci, Uwe Ohler, Scott A. Lacadie, Shawn M. Burgess, Cecilia Lanny Winata, Fredericus J. M. van Eeden, Juan M. Vaquerizas, José Luis Gómez-Skármeta, Daria Onichtchouk, James B. Brown, Ozren Bogdanović, Erik van Nimwegen, Monte Westerfield, Fiona C. Wardle, Carsten O. Daub, Boris Lenhard, Ferenc Müller - Nature Genetics 2022 cited by 98
- A gene expression map of Arabidopsis thaliana development
Authors: Markus Schmid, Timothy S. Davison, Stefan R. Henz, Utz Johann Pape, Monika Demar, Martin Vingron, Bernhard Schölkopf, Detlef Weigel, Jan U. Lohmann - Nature Genetics 2005 cited by 2,548
- Preformed chromatin topology assists transcriptional robustness of Shh during limb development
Authors: Christina Paliou, Philine Guckelberger, Robert Schöpflin, Verena Heinrich, Andrea Esposito, Andrea M. Chiariello, Simona Bianco, Carlo Annunziatella, Johannes Helmuth, Stefan A. Haas, Ivana Jerković, Norbert Brieske, Lars Wittler, Bernd Timmermann, Mario Nicodemi, Martin Vingron, Stefan Mundlos, Guillaume Andrey - National Academy of Sciences, Proceedings of the National Academy of Sciences 2019 cited by 177
- T cells become licensed in the lung to enter the central nervous system
Authors: Francesca Odoardi, Christopher Sie, Kristina Streyl, Vijay K. Ulaganathan, Christian Schläger, Dmitri Lodygin, Klaus Heckelsmiller, Wilfried Nietfeld, Joachim W. Ellwart, Wolfgang E. F. Klinkert, Claudio Lottaz, Mikhail Nosov, Volker Brinkmann, Rainer Spang, Hans Lehrach, Martin Vingron, Hartmut Wekerle, Cassandra Flügel‐Koch, Alexander Flügel - Nature 2012 cited by 438
- Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells
Authors: Daniel Rosebrock, Sneha Arora, Naresh Mutukula, Rotem Volkman, Elzbieta Gralinska, Anastasios Balaskas, Amèlia Aragonés Hernández, René Buschow, Björn Brändl, Frank Müller, Peter F. Arndt, Martin Vingron, Yechiel Elkabetz - Nature Cell Biology 2022 cited by 89
- Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils
Authors: Luigi Grassi, Farzin Pourfarzad, Sebastian Ullrich, Angelika Merkel, Felipe Were, Enrique Carrillo de Santa Pau, Guoqiang Yi, Ida H. Hiemstra, Anton T. J. Tool, Erik Mul, Juliane Perner, Eva M. Janssen‐Megens, Kim Berentsen, Hinri Kerstens, Ehsan Habibi, Marta Gut, Marie Laure Yaspo, Matthias Linser, Ernesto Lowy, Avik Datta, Laura Clarke, Paul Flicek, Martin Vingron, Dirk Roos, Timo K. van den Berg, Simon Heath, Daniel Rico, Mattia Frontini, Myrto Kostadima, Marta Gut, Alfonso Valencia, Willem H. Ouwehand, Hendrik G. Stunnenberg, Joost H.A. Martens, Taco W. Kuijpers - Cell Reports 2018 cited by 137
- Histone modification levels are predictive for gene expression
Authors: Rosa Karlić, Ho‐Ryun Chung, Julia Lasserre, Kristian Vlahoviček, Martin Vingron - National Academy of Sciences, Proceedings of the National Academy of Sciences 2010 cited by 853
- Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases
Authors: Uirá Souto Melo, Robert Schöpflin, Rocío Acuña‐Hidalgo, Martin A. Mensah, Björn Fischer‐Zirnsak, Manuel Holtgrewe, Marius-Konstantin Klever, Seval Türkmen, Verena Heinrich, Ilina D. Pluym, Eunice Matoso, Sérgio B. Sousa, Pedro Louro, Wiebke Hülsemann, Monika Cohen, Andreas Dufke, Anna Latos‐Bieleńska, Martin Vingron, Vera M. Kalscheuer, Fabiola Quintero‐Rivera, Malte Spielmann, Stefan Mundlos - The American Journal of Human Genetics 2020 cited by 125
- IsoTools: a flexible workflow for long-read transcriptome sequencing analysis
Authors: Matthias Lienhard, Twan van den Beucken, Bernd Timmermann, Myriam Hochradel, Stefan Börno, Florian Caiment, Martin Vingron, Ralf Herwig - Bioinformatics, Bioinform. 2023 cited by 33
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Authors: Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron, Ewan Birney - Bioinformatics, Bioinform. 2012 cited by 1,492
- Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations
Authors: Katerina Kraft, Andreas Magg, Verena Heinrich, Christina Riemenschneider, Robert Schöpflin, Julia Markowski, Daniel M. Ibrahim, Rocío Acuña‐Hidalgo, Alexandra Despang, Guillaume Andrey, Lars Wittler, Bernd Timmermann, Martin Vingron, Stefan Mundlos - Nature Cell Biology 2019 cited by 167
- CD74–NRG1 Fusions in Lung Adenocarcinoma
Authors: Lynnette Fernandez‐Cuesta, Dennis Plenker, Hirotaka Osada, Ruping Sun, Roopika Menon, Frauke Leenders, Sandra Ortiz‐Cuaran, Martin Peifer, Marc Bos, Juliane Daßler, Florian Malchers, Jakob Schöttle, Wenzel Vogel, Ilona Dahmen, Mirjam Koker, Roland T. Ullrich, Gavin Wright, Prudence A. Russell, Zoe Wainer, Benjamin Solomon, Élisabeth Brambilla, Hélène Nagy-Mignotte, Denis Moro‐Sibilot, Christian Brambilla, Sylvie Lantuéjoul, Janine Altmüller, Christian Becker, Peter Nürnberg, Johannes M. Heuckmann, Erich Stoelben, Iver Petersen, Joachim H. Clement, Jörg Sänger, Lucia Anna Muscarella, Annamaria la Torre, Vito Michele Fazio, Idoya Lahortiga, Timothy Perera, Souichi Ogata, Marc Paradé, Dirk Brehmer, Martin Vingron, Lukas C. Heukamp, Reinhard Buettner, Thomas Zander, Jürgen Wolf, Sven Perner, Sascha Ansén, Stefan A. Haas, Yasushi Yatabe, Roman K. Thomas - Cancer Discovery 2014 cited by 293
- Haplotype-resolved sweet potato genome traces back its hexaploidization history
Authors: Jun Yang, M-Hossein Moeinzadeh, Heiner Kuhl, Johannes Helmuth, Peng Xiao, Stefan A. Haas, Guiling Liu, Jianli Zheng, Zhe Sun, Weijuan Fan, Gaifang Deng, Hongxia Wang, Fenhong Hu, Shanshan Zhao, Alisdair R. Fernie, Stefan Boerno, Bernd Timmermann, Peng Zhang, Martin Vingron - Nature Plants 2017 cited by 381
- Polymer physics predicts the effects of structural variants on chromatin architecture
Authors: Simona Bianco, Darío G. Lupiáñez, Andrea M. Chiariello, Carlo Annunziatella, Katerina Kraft, Robert Schöpflin, Lars Wittler, Guillaume Andrey, Martin Vingron, Ana Pombo, Stefan Mundlos, Mario Nicodemi - Nature Genetics 2018 cited by 258
- A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
Authors: Marc Sultan, Marcel H. Schulz, Hugues Richard, Alon Magen, Andreas Klingenhoff, Matthias Scherf, Martin Seifert, Tatiana Borodina, Aleksey V. Soldatov, Dmitri Parkhomchuk, Dominic Schmidt, Sean O’Keeffe, Stefan A. Haas, Martin Vingron, Hans Lehrach, Marie‐Laure Yaspo - Science 2008 cited by 1,317
- Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
Authors: Bjørt K. Kragesteen, Malte Spielmann, Christina Paliou, Verena Heinrich, Robert Schöpflin, Andrea Esposito, Carlo Annunziatella, Simona Bianco, Andrea M. Chiariello, Ivana Jerković, Izabela Harabula, Philine Guckelberger, Michael Pechstein, Lars Wittler, Wing-Lee Chan, Martin Franke, Darío G. Lupiáñez, Katerina Kraft, Bernd Timmermann, Martin Vingron, Axel Visel, Mario Nicodemi, Stefan Mundlos, Guillaume Andrey - Nature Genetics 2018 cited by 213
