Frank C. P. Holstege
Active 1995–2024
- 88
- Papers
- 18,339
- Citations
- 65
- h-index
- 85
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology66.9%
- Medicine16.6%
- Immunology and Microbiology5%
- Agricultural and Biological Sciences2.5%
- Computer Science2%
- Engineering1.6%
- Other5.4%
Topics
- Genomics and Chromatin Dynamics5.8%
- Bioinformatics and Genomic Networks5.5%
- RNA Research and Splicing4.2%
- Gene expression and cancer classification3.7%
- RNA and protein synthesis mechanisms3.2%
- Fungal and yeast genetics research2.8%
- Other74.8%
Coauthors
- Patrick Kemmeren25
- Marian J.A. Groot Koerkamp24
- Thanasis Margaritis20
- Philip Lijnzaad19
- Dik van Leenen17
- Sander R. van Hooff10
- Joris J. Benschop8
- Mariël Brok8
- Hans Clevers7
- Jarno Drost6
- Jayne Y. Hehir‐Kwa6
- Ruben van Boxtel6
- Bastiaan B.J. Tops5
- Eugène T.P. Verwiel5
- H. T. Marc Timmers5
- Harm van Bakel5
- Helen C. Causton5
- Laura S. Hiemcke‐Jiwa5
- Marc van Tuil5
- Michael T. Meister5
- Nathalie Brabers5
- Richard A. Young5
- Tineke L. Lenstra5
- Tito Candelli5
All papers
- Optimized human intestinal organoid model reveals interleukin-22-dependency of paneth cell formation
Authors: Gui‐Wei He, Lin Lin, Jeff DeMartino, Xuan Zheng, Nadzeya Staliarova, Talya L. Dayton, Harry Begthel, Willine J. van de Wetering, Eduard Bodewes, Jeroen S. van Zon, Sander J. Tans, Carmen Lopez-Iglesias, Peter J. Peters, Wei Wu, Daniel Kotlarz, Christoph Klein, Thanasis Margaritis, Frank C. P. Holstege, Hans Clevers - Cell stem cell 2022 cited by 173
- Tubuloids derived from human adult kidney and urine for personalized disease modeling
Authors: Frans Schutgens, Maarten B. Rookmaaker, Thanasis Margaritis, Anne C. Rios, Carola M. E. Ammerlaan, Jitske Jansen, Linda Gijzen, Marianne K. Vormann, Annelotte M. Vonk, Marco C. Viveen, Fjodor Yousef Yengej, Sepide Derakhshan, Karin M. de Winter‐de Groot, Benedetta Artegiani, Ruben van Boxtel, Edwin Cuppen, Antoni P. A. Hendrickx, Marry M. van den Heuvel‐Eibrink, Ellen Heitzer, Henriëtte L. Lanz, Jeffrey M. Beekman, Jean‐Luc Murk, Rosalinde Masereeuw, Frank C. P. Holstege, Jarno Drost, Marianne C. Verhaar, Hans Clevers - Nature Biotechnology 2019 cited by 449
- An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity
Authors: Camilla Calandrini, Frans Schutgens, Rurika Oka, Thanasis Margaritis, Tito Candelli, Luka Mathijsen, Carola M. E. Ammerlaan, Ravian L. van Ineveld, Sepide Derakhshan, Sanne de Haan, M. Emmy M. Dolman, Philip Lijnzaad, Lars Custers, Harry Begthel, Hindrik H. D. Kerstens, Lindy L. Visser, Maarten B. Rookmaaker, Marianne C. Verhaar, Godelieve A.M. Tytgat, Patrick Kemmeren, Ronald R. de Krijger, Reem Al‐Saadi, Kathy Pritchard‐Jones, Marcel Kool, Anne C. Rios, Marry M. van den Heuvel‐Eibrink, Jan J. Molenaar, Ruben van Boxtel, Frank C. P. Holstege, Hans Clevers, Jarno Drost - Nature Communications 2020 cited by 310
- Human fetal brain self-organizes into long-term expanding organoids
Authors: Delilah Hendriks, Anna Pagliaro, Francesco Andreatta, Ziliang Ma, Joey van Giessen, Simone Massalini, Carmen López‐Iglesias, Gijs J.F. van Son, Jeff DeMartino, J Damen, Iris Zoutendijk, Nadzeya Staliarova, Annelien L. Bredenoord, Frank C. P. Holstege, Peter J. Peters, Thanasis Margaritis, Susana M. Chuva de Sousa Lopes, Wei Wu, Hans Clevers, Benedetta Artegiani - Cell 2024 cited by 91
- Integrative analysis of neuroblastoma by single-cell RNA sequencing identifies the NECTIN2-TIGIT axis as a target for immunotherapy
Authors: Judith Wienke, Lindy L. Visser, Waleed M. Kholosy, Kaylee M. Keller, Marta Barisa, Evon Poon, Sophie Munnings-Tomes, Courtney Himsworth, Elizabeth Calton, Ana Isabel Enríquez Rodríguez, Ronald J. Bernardi, Femke van den Ham, Sander R. van Hooff, Yvette A.H. Matser, Michelle L. Tas, Karin P.S. Langenberg, Philip Lijnzaad, Anne L. Borst, Elisa Zappa, Francisca J Bergsma, Josephine G. M. Strijker, Bronte Manouk Verhoeven, Shenglin Mei, Amira Kramdi, Restuadi Restuadi, Álvaro Sánchez-Bernabéu, Annelisa M. Cornel, Frank C. P. Holstege, Juliet C. Gray, Godelieve A.M. Tytgat, Marijn A. Scheijde‐Vermeulen, Marc H.W.A. Wijnen, Miranda P. Dierselhuis, Karin Straathof, Sam Behjati, Wei Wu, Albert J. R. Heck, Jan Koster, Stefan Nierkens, Isabelle Janoueix‐Lerosey, Ronald R. de Krijger, Ninib Baryawno, Louis Chesler, John Anderson, Hubert Caron, Thanasis Margaritis, Max M. van Noesel, Jan J. Molenaar - Cancer Cell 2024 cited by 101
- Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
Authors: Alvis Brāzma, Pascal Hingamp, John Quackenbush, Gavin Sherlock, Paul T. Spellman, C. J. Stoeckert, John Aach, Wilhelm Ansorge, Catherine A. Ball, Helen C. Causton, Terry Gaasterland, Patrick Glenisson, Frank C. P. Holstege, Irene F. Kim, Victor Markowitz, John C. Matese, Helen Parkinson, Alan J. Robinson, Uğis Sarkans, Steffen Schulze-Kremer, Jason Stewart, Ronald C. Taylor, Jaak Vilo, Martin Vingron - Nature Genetics 2001 cited by 4,106
- Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell
Authors: Gerda Kildisiute, Waleed M. Kholosy, Matthew D. Young, Kenny Roberts, Rasa Elmentaite, Sander R. van Hooff, Clarissa N. Pacyna, Eleonora Khabirova, Alice Piapi, Christine Thevanesan, Eva Bugallo-Blanco, Christina Burke, Lira Mamanova, Kaylee M. Keller, Karin P.S. Langenberg, Philip Lijnzaad, Thanasis Margaritis, Frank C. P. Holstege, Michelle L. Tas, Marc H. W. A. Wijnen, Max M. van Noesel, Ignacio del Valle, Giuseppe Barone, Reinier van der Linden, Catriona Duncan, John Anderson, John C. Achermann, Muzlifah Haniffa, Sarah A. Teichmann, Dyanne Rampling, Neil J. Sebire, Xiaoling He, Ronald R. de Krijger, Roger A. Barker, Kerstin B. Meyer, Omer Ali Bayraktar, Karin Straathof, Jan J. Molenaar, Sam Behjati - Science Advances 2021 cited by 158
- Mesenchymal tumor organoid models recapitulate rhabdomyosarcoma subtypes
Authors: Michael T. Meister, Marian J.A. Groot Koerkamp, Terezinha Souza, Willemijn B. Breunis, Ewa Frazer‐Mendelewska, Mariël Brok, Jeff DeMartino, Freek Manders, Camilla Calandrini, Hinri Kerstens, Alex Janse, M. Emmy M. Dolman, Selma Eising, Karin P.S. Langenberg, Marc van Tuil, Rutger R. G. Knops, Sheila Terwisscha van Scheltinga, Laura S. Hiemcke‐Jiwa, Uta Flucke, Johannes H. M. Merks, Max M. van Noesel, Bastiaan B.J. Tops, Jayne Y. Hehir‐Kwa, Patrick Kemmeren, Jan J. Molenaar, Marc van de Wetering, Ruben van Boxtel, Jarno Drost, Frank C. P. Holstege - EMBO Molecular Medicine 2022 cited by 57
- Uterine Selection of Human Embryos at Implantation
Authors: Jan J. Brosens, Madhuri S. Salker, Gijs Teklenburg, Jaya Nautiyal, Scarlett Salter, Emma S. Lucas, Jennifer H. Steel, Mark Christian, Yi-Wah Chan, Carolien M. Boomsma, Jonathan D. Moore, Geraldine Hartshorne, Sandra Šućurović, Biserka Mulac‐Jeričević, Cobi J. Heijnen, Siobhan Quenby, Marian J.A. Groot Koerkamp, Frank C. P. Holstege, Anatoly Shmygol, Nick Macklon - Scientific Reports 2014 cited by 323
- Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces cerevisiae
Authors: Sean R. Collins, Patrick Kemmeren, Xuechu Zhao, Jack Greenblatt, Forrest Spencer, Frank C. P. Holstege, Jonathan S. Weissman, Nevan J. Krogan - Molecular & Cellular Proteomics 2007 cited by 801
- Large-Scale Genetic Perturbations Reveal Regulatory Networks and an Abundance of Gene-Specific Repressors
Authors: Patrick Kemmeren, Katrin Sameith, Loes A. L. van de Pasch, Joris J. Benschop, Tineke L. Lenstra, Thanasis Margaritis, Eoghan O’Duibhir, Eva Apweiler, Sake van Wageningen, Cheuk W. Ko, Sebastiaan van Heesch, Mehdi Kashani, Giannis Ampatziadis-Michailidis, Mariël Brok, Nathalie Brabers, Anthony J Miles, Diane Bouwmeester, Sander R. van Hooff, Harm van Bakel, Erik Sluiters, Linda V. Bakker, Berend Snel, Philip Lijnzaad, Dik van Leenen, Marian J.A. Groot Koerkamp, Frank C. P. Holstege - Cell 2014 cited by 314
- Implementation of paediatric precision oncology into clinical practice: The Individualized Therapies for Children with cancer program ‘iTHER’
Authors: Karin P.S. Langenberg, Michael T. Meister, Jette J. Bakhuizen, Judith M. Boer, Natasha K. A. van Eijkelenburg, Esther Hulleman, Uri Ilan, Eleonora J. Looze, Miranda P. Dierselhuis, Jasper van der Lugt, Willemijn B. Breunis, Linda Schild, Kimberley Ober, Sander R. van Hooff, Marijn A. Scheijde‐Vermeulen, Laura S. Hiemcke‐Jiwa, Uta Flucke, Mariëtte E.G. Kranendonk, Pieter Wesseling, Edwin Sonneveld, Simone Punt, Arjan Boltjes, Freerk van Dijk, Eugène T.P. Verwiel, Richard Volckmann, Jayne Y. Hehir‐Kwa, Lennart Kester, Marco M.J. Koudijs, Esmé Waanders, Frank C. P. Holstege, Josef Vormoor, Eelco W. Hoving, Max M. van Noesel, Rob Pieters, Marcel Kool, Miriam Stumpf, Mirjam Blattner-Johnson, Gnana Prakash Balasubramanian, Cornelis M. van Tilburg, Barbara C. Jones, David Jones, Olaf Witt, Stefan M. Pfister, Marjolijn C.J. Jongmans, Roland P. Kuiper, Ronald R. de Krijger, Marc H W Wijnen, Monique L. den Boer, C. Michel Zwaan, Patrick Kemmeren, Jan Köster, Bastiaan B.J. Tops, Bianca F. Goemans, Jan J. Molenaar - European Journal of Cancer 2022 cited by 60
- Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma
Authors: Jeff DeMartino, Michael T. Meister, Lindy L. Visser, Mariël Brok, Marian J.A. Groot Koerkamp, Amber K. L. Wezenaar, Laura S. Hiemcke‐Jiwa, Terezinha Souza, Johannes H. M. Merks, Anne C. Rios, Frank C. P. Holstege, Thanasis Margaritis, Jarno Drost - Nature Communications 2023 cited by 52
- Canonical Wnt Signaling Negatively Modulates Regulatory T Cell Function
Authors: Jorg van Loosdregt, Veerle Fleskens, Machteld M. Tiemessen, Michal Mokrý, Ruben van Boxtel, Jenny Meerding, Cornelieke Pals, Dorota Kurek, Miranda R.M. Baert, Eveline M. Delemarre, Andrea Gröne, Marian J.A. Groot Koerkamp, Alice J.A.M. Sijts, Edward E. S. Nieuwenhuis, Madelon M. Maurice, Johan H. van Es, Derk ten Berge, Frank C. P. Holstege, Frank J. T. Staal, Dietmar M. Zaiss, Berent J. Prakken, Paul J. Coffer - Immunity 2013 cited by 240
- Single-cell atlas of developing murine adrenal gland reveals relation of Schwann cell precursor signature to neuroblastoma phenotype
Authors: Evelyn S. Hanemaaijer, Thanasis Margaritis, Karin Sanders, Frank L. Bos, Tito Candelli, Hanin Al-Saati, Max M. van Noesel, Friederike Meyer‐Wentrup, Marc van de Wetering, Frank C. P. Holstege, Hans Clevers - National Academy of Sciences, Proceedings of the National Academy of Sciences 2021 cited by 87
- An endometrial gene expression signature accurately predicts recurrent implantation failure after IVF
Authors: Yvonne E Koot, Sander R. van Hooff, Carolien M. Boomsma, Dik van Leenen, Marian J.A. Groot Koerkamp, Mariëtte Goddijn, Marinus J.C. Eijkemans, Bart C.J.M. Fauser, Frank C. P. Holstege, Nick Macklon - Scientific Reports 2016 cited by 185
- ErbB2 (HER2)-CAR-NK-92 cells for enhanced immunotherapy of metastatic fusion-driven alveolar rhabdomyosarcoma
Authors: Catrin Heim, Laura M. Moser, Herman Kreyenberg, Halvard Bönig, Torsten Tonn, Winfried S. Wels, Elise Gradhand, Evelyn Ullrich, Michael T. Meister, Marian J.A. Groot Koerkamp, Frank C. P. Holstege, Jarno Drost, Jan‐Henning Klusmann, Peter Bader, Michael Merker, Eva Rettinger - Frontiers in Immunology 2023 cited by 16
- Dissecting the Regulatory Circuitry of a Eukaryotic Genome
Authors: Frank C. P. Holstege, Ezra G. Jennings, John J. Wyrick, Tong Ihn Lee, Christoph J. Hengartner, Michael R. Green, Todd R. Golub, Eric S. Lander, Richard A. Young - Cell 1998 cited by 1,681
- Modulation of glutamine metabolism by the PI(3)K–PKB–FOXO network regulates autophagy
Authors: Kristan E. van der Vos, Pernilla Eliasson, Tassula Proikas‐Cezanne, Stephin J. Vervoort, Ruben van Boxtel, Marrit Putker, Iris J. van Zutphen, Mario Mauthe, Sebastian Zellmer, Cornelieke Pals, Liesbeth P. Verhagen, Marian J.A. Groot Koerkamp, A. Koen Braat, Tobias B. Dansen, Frank C. P. Holstege, Rolf Gebhardt, Boudewijn Burgering, Paul J. Coffer - Nature Cell Biology 2012 cited by 246
- From Structure to Systems: High-Resolution, Quantitative Genetic Analysis of RNA Polymerase II
Authors: Hannes Braberg, Huiyan Jin, Erica A. Moehle, Yujia A. Chan, Shuyi Wang, Michael Shales, Joris J. Benschop, John H. Morris, Chenxi Qiu, Fuqu Hu, Leung K. Tang, James S. Fraser, Frank C. P. Holstege, Philip Hieter, Christine Guthrie, Craig D. Kaplan, Nevan J. Krogan - Cell 2013 cited by 164
- E2F7 represses a network of oscillating cell cycle genes to control S-phase progression
Authors: Bart Westendorp, Michal Mokrý, Marian J.A. Groot Koerkamp, Frank C. P. Holstege, Edwin Cuppen, Alain de Bruin - Nucleic Acids Research 2011 cited by 124
- Single cell derived mRNA signals across human kidney tumors
Authors: Matthew D. Young, Thomas J. Mitchell, Lars Custers, Thanasis Margaritis, Francisco Morales-Rodriguez, Kwasi Kwakwa, Eleonora Khabirova, Gerda Kildisiute, Thomas R. W. Oliver, Ronald R. de Krijger, Marry M. van den Heuvel‐Eibrink, Federico Comitani, Alice Piapi, Eva Bugallo-Blanco, Christine Thevanesan, Christina Burke, Elena Prigmore, Kirsty Ambridge, Kenny Roberts, Felipe A. Vieira Braga, Tim Coorens, Ignacio Del Valle, Anna Wilbrey-Clark, Lira Mamanova, Grant D. Stewart, Vincent J. Gnanapragasam, Dyanne Rampling, Neil J. Sebire, Nicholas Coleman, Liz Hook, Anne Y. Warren, Muzlifah Haniffa, Marcel Kool, Stefan M. Pfister, John C. Achermann, Xiaoling He, Roger A. Barker, Adam Shlien, Omer Ali Bayraktar, Sarah A. Teichmann, Frank C. P. Holstege, Kerstin B. Meyer, Jarno Drost, Karin Straathof, Sam Behjati - Nature Communications 2021 cited by 59
- Improved Gene Fusion Detection in Childhood Cancer Diagnostics Using RNA Sequencing
Authors: Jayne Y. Hehir‐Kwa, Marco J. Koudijs, Eugène T.P. Verwiel, Lennart Kester, Marc van Tuil, Eric Strengman, Arjan Buijs, Mariëtte E.G. Kranendonk, Laura S. Hiemcke‐Jiwa, Válerie de Haas, Ellen van de Geer, Wendy de Leng, Jasper van der Lugt, Philip Lijnzaad, Frank C. P. Holstege, Patrick Kemmeren, Bastiaan B.J. Tops, Genetica Sectie Genoomdiagnostiek, Pathologie Moleculair, Cancer, Pathologie Groep Van Diest, PMC Medisch specialisten, Pathologie Pathologen staf, CMM - 2022 cited by 39
- Improved Gene Fusion Detection in Childhood Cancer Diagnostics Using RNA Sequencing
Authors: Jayne Y. Hehir-Kwa, Marco J. Koudijs, Eugene T. P. Verwiel, Lennart A. Kester, Marc van Tuil, Eric Strengman, Arjan Buijs, Mariëtte E. G. Kranendonk, Laura S. Hiemcke-Jiwa, Valerie de Haas, Ellen van de Geer, Wendy de Leng, Jasper van der Lugt, Philip Lijnzaad, Frank C. P. Holstege, Patrick Kemmeren, Bastiaan B. J. Tops - JCO Precision Oncology 2022 cited by 38
