litlas
Log inCreate account

John Quackenbush

Active 1996–2025

215
Papers
65,983
Citations
105
h-index
191
i10-index

Citations

Citations per year for John Quackenbush1931: 1 citations1950: 1 citations1976: 1 citations1980: 1 citations1984: 1 citations1986: 3 citations1987: 2 citations1989: 3 citations1990: 1 citations1991: 1 citations1992: 2 citations1993: 1 citations1994: 2 citations1995: 1 citations1996: 6 citations1997: 64 citations1998: 363 citations1999: 367 citations2000: 304 citations2001: 284 citations2002: 365 citations2003: 576 citations2004: 665 citations2005: 733 citations2006: 783 citations2007: 700 citations2008: 754 citations2009: 697 citations2010: 745 citations2011: 738 citations2012: 705 citations2013: 652 citations2014: 641 citations2015: 681 citations2016: 665 citations2017: 659 citations2018: 707 citations2019: 1,813 citations2020: 1,933 citations2021: 1,921 citations2022: 1,409 citations2023: 1,047 citations2024: 1,414 citations2025: 678 citations2026: 85 citations1932–1949: no citations, so these years are not shown1951–1975: no citations, so these years are not shown1977–1979: no citations, so these years are not shown1981–1983: no citations, so these years are not shown1985: no citations, so this year is not shown1988: no citations, so this year is not shown

Citation sources

Countries

World map of the countries and regions citing this authorUnited States: 8,709 citing papers, 26.5% of this breakdownChina: 3,628 citing papers, 11% of this breakdownUnited Kingdom: 2,251 citing papers, 6.8% of this breakdownGermany: 2,159 citing papers, 6.6% of this breakdownCanada: 1,323 citing papers, 4% of this breakdownFrance: 1,312 citing papers, 4% of this breakdownItaly: 1,200 citing papers, 3.7% of this breakdownNetherlands: 978 citing papers, 3% of this breakdownJapan: 969 citing papers, 2.9% of this breakdownAustralia: 881 citing papers, 2.7% of this breakdownSpain: 730 citing papers, 2.2% of this breakdownIndia: 616 citing papers, 1.9% of this breakdown
0%26.5%Other 24.7%

Institutions

Fields

  • Biochemistry, Genetics and Molecular Biology39.9%
  • Medicine37.4%
  • Agricultural and Biological Sciences5.2%
  • Computer Science4.5%
  • Immunology and Microbiology4.4%
  • Neuroscience1.8%
  • Other6.8%

Topics

  • Radiomics and Machine Learning in Medical Imaging5.5%
  • Gene expression and cancer classification3.7%
  • Bioinformatics and Genomic Networks3.1%
  • Genomics and Phylogenetic Studies2.1%
  • AI in cancer detection2%
  • Artificial Intelligence in Healthcare and Education1.6%
  • Other82%

Coauthors

All papers

Open in search
  1. Artificial intelligence in radiology

    Authors: Ahmed Hosny, Chintan Parmar, John Quackenbush, Lawrence H. Schwartz, Hugo J.W.L. Aerts - Nature reviews. Cancer 2018 cited by 3,629

  2. Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach

    Authors: Hugo J.W.L. Aerts, Emmanuel Rios Velazquez, Ralph T. H. Leijenaar, Chintan Parmar, Patrick Großmann, Sara Carvalho, Johan Bussink, René Monshouwer, Benjamin Haibe‐Kains, D. Rietveld, Frank Hoebers, Michelle M. Rietbergen, C. René Leemans, André Dekker, John Quackenbush, Robert J. Gillies, Philippe Lambin - Nature Communications 2014 cited by 5,145

  3. Transparency and reproducibility in artificial intelligence

    Authors: Benjamin Haibe‐Kains, George Alexandru Adam, Ahmed Hosny, Farnoosh Khodakarami, Massive Analysis Quality Control (MAQC) Society Board of Directors, Thakkar Shraddha, Rebecca Kusko, Susanna‐Assunta Sansone, Weida Tong, Russ Wolfinger, Christopher E. Mason, Wendell Jones, Joaquı́n Dopazo, Cesare Furlanello, Levi Waldron, Bo Wang, Chris McIntosh, Anna Goldenberg, Anshul Kundaje, Casey S. Greene, Tamara Broderick, Michael M. Hoffman, Jeffrey T. Leek, Keegan Korthauer, Wolfgang Huber, Alvis Brāzma, Joëlle Pineau, Robert Tibshirani, Trevor Hastie, John P. A. Ioannidis, John Quackenbush, Hugo J.W.L. Aerts - Nature 2020 cited by 501

  4. Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues

    Authors: Camila M. Lopes‐Ramos, Cho-Yi Chen, Marieke L. Kuijjer, Joseph N. Paulson, Abhijeet R. Sonawane, Maud Fagny, John Platig, Kimberly Glass, John Quackenbush, Dawn L. DeMeo - Cell Reports 2020 cited by 536

  5. Understanding Tissue-Specific Gene Regulation

    Authors: Abhijeet R. Sonawane, John Platig, Maud Fagny, Cho-Yi Chen, Joseph N. Paulson, Camila M. Lopes‐Ramos, Dawn L. DeMeo, John Quackenbush, Kimberly Glass, Marieke L. Kuijjer - Cell Reports 2017 cited by 464

  6. TM4: A Free, Open-Source System for Microarray Data Management and Analysis

    Authors: A Saeed, Vasily Sharov, Joseph White, Jiatong Li, Wei Liang, Nirmal Bhagabati, John Braisted, Maria I. Klapa, Tracey Currier, Mathangi Thiagarajan, Alexander Sturn, M. Snuffin, A. Rezantsev, Д. А. Попов, A. Ryltsov, E. Kostukovich, I. Borisovsky, Z. Liu, A. Vinsavich, V. Trush, John Quackenbush - BioTechniques 2003 cited by 4,955

  7. Minimum information about a microarray experiment (MIAME)—toward standards for microarray data

    Authors: Alvis Brāzma, Pascal Hingamp, John Quackenbush, Gavin Sherlock, Paul T. Spellman, C. J. Stoeckert, John Aach, Wilhelm Ansorge, Catherine A. Ball, Helen C. Causton, Terry Gaasterland, Patrick Glenisson, Frank C. P. Holstege, Irene F. Kim, Victor Markowitz, John C. Matese, Helen Parkinson, Alan J. Robinson, Uğis Sarkans, Steffen Schulze-Kremer, Jason Stewart, Ronald C. Taylor, Jaak Vilo, Martin Vingron - Nature Genetics 2001 cited by 4,106

  8. Somatic Mutations Drive Distinct Imaging Phenotypes in Lung Cancer

    Authors: Emmanuel Rios Velazquez, Chintan Parmar, Ying Liu, Thibaud Coroller, Gisele Cruz, Olya Stringfield, Zhaoxiang Ye, Mike Makrigiorgos, Fiona Fennessy, Raymond H. Mak, Robert J. Gillies, John Quackenbush, Hugo J.W.L. Aerts - Cancer Research 2017 cited by 394

  9. Genome-Wide Sex and Gender Differences in Cancer

    Authors: Camila M. Lopes‐Ramos, John Quackenbush, Dawn L. DeMeo - Frontiers in Oncology 2020 cited by 169

  10. Microarray data normalization and transformation

    Authors: John Quackenbush - Nature Genetics 2002 cited by 2,007

  11. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

    Authors: Katsunaga Sakai, M. Furuno, Mari Nakamura, J. Adachi, Ikuko Kagawa, M. Yoshino, I. Nikaido, Yoshiyuki Ishii, R. Saito, Ken Yagi, Shinji Kondo, Takahiro Arakawa, Naoki Osato, Daisuke Sasaki, Ayako Hara, Ai Miyazaki, Wataru Hashizume, Kazunori Waki, H. Konno, Hidemasa Bono, Hiroyuki Konno, T. Shiraki, Koichi Imotani, J. Kawai, Norihito Hayatsu, Harukazu Suzuki, Yuki Hasegawa, Akira Shinagawa, W. Hashizume, Naoko Sakazume, Itaru Yamanaka, Shiro Fukuda, Masaaki Furuno, Jun Adachi, Akira Yasunishi, Tomoko Hirozane-Kishikawa, Katsunori Aizawa, M. Yoshino, Toshiyuki Shiraki, P. Carninci, Kazuhiro Shibata, Masayoshi Itoh, H. Kawaji, Piero Carninci, K. Numata, M. Tomita, K. Sato, C. Schönbach, Yuki Hasegawa, I. V. Kurochkin, T. Nagashima, T. Gojobori, T. Okido, Masaru Tomita, Koji Numata, Akio Kanai, K Sato, D. Bradt, Yoshihide Hayashizaki, Christian Schönbach, Akihiko Konagaya, Takeshi Nagashima, Igor V. Kurochkin, Toshihisa Okido, Takashi Gojobori, Judith A. Blake, Benjamin L. King, Martin Ringwald, Carol J. Bult, David P. Hill, Louise M. McKenzie, Qi Dong, Sridhar Ramachandran, Dirck Bradt, Lois J. Maltais, C. Wells, Richard M. Baldarelli, Deborah J. Reed, Lori E Corbani, Sharon Cousins, Linsen Yang, Y. Zhu, Zheng Yuan, David Hume, Rohan D. Teasdale, Sean M. Grimmond, Alistair R. R. Forrest, Christine A. Wells, Timothy Ravasi, Geo Pertea, Yan Wang, Răzvan Sultana, John Quackenbush, Yong Suk Lee, Ines Yang, Lukas Wagner, Donna Maglott, Joan Pontius, Lynn M. Schriml, Alexander Kanapin and 37 more - Nature 2002 cited by 1,653

  12. The complete genome sequence of the gastric pathogen Helicobacter pylori

    Authors: Jean-F. Tomb, Owen White, Anthony R. Kerlavage, Rebecca A. Clayton, Granger G. Sutton, Robert Fleischmann, Karen A. Ketchum, Hans Peter Klenk, Steven R. Gill, Brian Dougherty, Karen Nelson, John Quackenbush, Lixin Zhou, Ewen F. Kirkness, Scott N. Peterson, Brendan Loftus, Delwood Richardson, Robert J. Dodson, Hanif Khalak, Anna Glodek, Keith McKenney, Lisa M. Fitzegerald, Norman Lee, Mark D. Adams, Erin K. Hickey, Douglas E. Berg, Jeanine D. Gocayne, Teresa R. Utterback, Jeremy Peterson, Jenny M. Kelley, Matthew Cotton, Janice M. Weidman, Claire Fujii, Cheryl Bowman, Larry Watthey, Erik Jakob Wallin, William S. Hayes, Mark Borodovsky, Peter D. Karp, Hamilton O. Smith, Claire M. Fraser, J. Craig Venter - Nature 1997 cited by 3,561

  13. Passing Messages between Biological Networks to Refine Predicted Interactions

    Authors: Kimberly Glass, Curtis Huttenhower, John Quackenbush, Guo‐Cheng Yuan - PLoS ONE 2013 cited by 317

  14. Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors

    Authors: Jason I. Herschkowitz, Karl Simin, Victor Weigman, Igor Mikaelian, Jerry Usary, Zhiyuan Hu, Karen Rasmussen, Laundette P. Jones, Shahin Assefnia, Subhashini Chandrasekharan, Michael G. Backlund, Yuzhi Yin, Andrey Khramtsov, Roy Bastein, John Quackenbush, Robert I. Glazer, Powel H. Brown, Jeffrey E. Green, Levy Kopelovich, Priscilla A. Furth, Juan Palazzo, Olufunmilayo I. Olopade, Philip S. Bernard, Gary A. Churchill, Terry Van Dyke, Charles M. Perou - Genome biology 2007 cited by 1,265

  15. survcomp: an R/Bioconductor package for performance assessment and comparison of survival models

    Authors: Markus S. Schröder, Aedín C. Culhane, John Quackenbush, Benjamin Haibe-Kains - Bioinformatics, Bioinform. 2011 cited by 510

  16. Data Analysis Strategies in Medical Imaging

    Authors: Chintan Parmar, Joseph D. Barry, Ahmed Hosny, John Quackenbush, Hugo J.W.L. Aerts - Clinical Cancer Research 2018 cited by 166

  17. RNA-Seq analysis in MeV

    Authors: Eleanor Howe, Raktim Sinha, Daniel Schlauch, John Quackenbush - Bioinformatics, Bioinform. 2011 cited by 541

  18. Molecular networks in Network Medicine: Development and applications

    Authors: Edwin K. Silverman, Harald Schmidt, Eleni Anastasiadou, Lucia Altucci, Marco Angelini, Lina Badimón, Jean‐Luc Balligand, Giuditta Benincasa, Giovambattista Capasso, Federica Conte, Antonella Di Costanzo, Lorenzo Farina, Giulia Fiscon, Laurent Gatto, Michele Gentili, Joseph Loscalzo, Cinzia Marchese, Claudio Napoli, Paola Paci, Manuela Petti, John Quackenbush, Paolo Tieri, Davide Viggiano, Gemma Vilahur, Kimberly Glass, Jan Baumbach - WIREs Systems Biology and Medicine 2020 cited by 218

  19. Genesis: cluster analysis of microarray data

    Authors: Alexander Sturn, John Quackenbush, Zlatko Trajanoski - Bioinformatics, Bioinform. 2002 cited by 1,805

  20. Exploratory Study to Identify Radiomics Classifiers for Lung Cancer Histology

    Authors: Weimiao Wu, Chintan Parmar, Patrick Großmann, John Quackenbush, Philippe Lambin, Johan Bussink, Raymond H. Mak, Hugo J.W.L. Aerts - Frontiers in Oncology 2016 cited by 372

  21. Challenges and emerging directions in single-cell analysis

    Authors: Guo‐Cheng Yuan, Long Cai, Michael B. Elowitz, Tariq Enver, Guoping Fan, Guoji Guo, Rafael A. Irizarry, Peter V. Kharchenko, Junhyong Kim, Stuart H. Orkin, John Quackenbush, Assieh Saadatpour, Timm Schroeder, Ramesh A. Shivdasani, Itay Tirosh - Genome biology 2017 cited by 370

  22. Mitochondrial iron chelation ameliorates cigarette smoke–induced bronchitis and emphysema in mice

    Authors: Suzanne M. Cloonan, Kimberly Glass, María Laucho-Contreras, Abhiram R. Bhashyam, Morgan Cervo, Maria Pabón, Csaba Konràd, Francesca Polverino, Ilias Ι. Siempos, Elizabeth Perez, Kenji Mizumura, Manik C. Ghosh, Harikrishnan Parameswaran, Niamh C. Williams, Kristen T. Rooney, Zhi-Hua Chen, Monica Goldklang, Guo‐Cheng Yuan, Steven C. Moore, Dawn L. DeMeo, Tracey A. Rouault, Jeanine D’Armiento, Eric A. Schon, Giovanni Manfredi, John Quackenbush, Ashfaq Mahmood, Edwin K. Silverman, Caroline A. Owen, Augustine M.K. Choi - Nature Medicine 2016 cited by 268

  23. Relationship of DNA Methylation and Gene Expression in Idiopathic Pulmonary Fibrosis

    Authors: Ivana V. Yang, Brent S. Pedersen, Einat Rabinovich, Corinne E. Hennessy, Elizabeth Davidson, Elissa Murphy, Brenda Juan Guardela, John Tedrow, Yingze Zhang, Mandal K. Singh, Mick Correll, Marvin I. Schwarz, Mark W. Geraci, Frank C. Sciurba, John Quackenbush, Avrum Spira, Naftali Kaminski, David A. Schwartz - American Journal of Respiratory and Critical Care Medicine 2014 cited by 188

  24. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

    Authors: Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush - Bioinformatics, Bioinform. 2003 cited by 2,024