Stuart H. Orkin
Active 1975–2025
- 392
- Papers
- 111,137
- Citations
- 190
- h-index
- 390
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Biochemistry, Genetics and Molecular Biology58.4%
- Medicine29.3%
- Immunology and Microbiology7.3%
- Neuroscience2.5%
- Agricultural and Biological Sciences0.8%
- Engineering0.4%
- Other1.3%
Topics
- Epigenetics and DNA Methylation4.9%
- CRISPR and Genetic Engineering3.1%
- Genomics and Chromatin Dynamics3%
- Pluripotent Stem Cells Research2.6%
- RNA modifications and cancer2.5%
- RNA Research and Splicing2%
- Other81.9%
Coauthors
- Yuko Fujiwara61
- Guo‐Cheng Yuan33
- Daniel E. Bauer26
- Jian Xu26
- Vijay G. Sankaran21
- Alan Cantor17
- Luca Pinello17
- Matthew C. Canver16
- Ramesh A. Shivdasani16
- Jonghwan Kim15
- Leonard I. Zon15
- Guoji Guo14
- Huafeng Xie13
- Hanna Mikkola11
- Sabra C. Goff11
- Zhen Shao11
- Channing Yu10
- George Q. Daley10
- Mitchell J. Weiss10
- Qian Zhu10
- Woojin Kim10
- Merlin Crossley9
- Xiaohua Shen9
- Davide Seruggia8
All papers
- Mapping the Mouse Cell Atlas by Microwell-Seq
Authors: Xiaoping Han, Renying Wang, Yincong Zhou, Lijiang Fei, Huiyu Sun, Shujing Lai, Assieh Saadatpour, Ziming Zhou, Haide Chen, Fang Ye, Daosheng Huang, Yang Xu, Wentao Huang, Mengmeng Jiang, Xinyi Jiang, Jie Mao, Yao Chen, Chenyu Lu, Jin Xie, Qun Fang, Yibin Wang, Rui Yue, Tiefeng Li, He Huang, Stuart H. Orkin, Guo‐Cheng Yuan, Ming Chen, Guoji Guo - Cell 2018 cited by 1,749
- Hematopoiesis: An Evolving Paradigm for Stem Cell Biology
Authors: Stuart H. Orkin, Leonard I. Zon - Cell 2008 cited by 2,552
- High-fat diet enhances stemness and tumorigenicity of intestinal progenitors
Authors: Semir Beyaz, Miyeko Mana, Jatin Roper, Dmitriy Kedrin, Assieh Saadatpour, Sue‐Jean Hong, Khristian E. Bauer-Rowe, Michael E. Xifaras, Adam Akkad, Erika Arias, Luca Pinello, Yarden Katz, Shweta Shinagare, Monther Abu-Remaileh, Maria M. Mihaylova, Dudley W. Lamming, Rizkullah Dogum, Guoji Guo, George W. Bell, Martin K. Selig, G. Petur Nielsen, Nitin Gupta, Cristina R. Ferrone, Vikram Deshpande, Guo‐Cheng Yuan, Stuart H. Orkin, David M. Sabatini, Ömer Yılmaz - Nature 2016 cited by 864
- BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis
Authors: Matthew C. Canver, Elenoe C. Smith, Falak Sher, Luca Pinello, Neville E. Sanjana, Ophir Shalem, Diane D. Chen, Patrick G. Schupp, Divya S. Vinjamur, Sara P. Garcia, Sidinh Luc, Ryo Kurita, Yukio Nakamura, Yuko Fujiwara, Takahiro Maeda, Guo‐Cheng Yuan, Feng Zhang, Stuart H. Orkin, Daniel E. Bauer - Nature 2015 cited by 922
- An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells
Authors: Sarah Bowling, Duluxan Sritharan, Fernando G. Osorio, Maximilian Nguyen, Priscilla Cheung, Alejo Rodriguez-Fraticelli, Sachin Patel, Wei-Chien Yuan, Yuko Fujiwara, Bin E. Li, Stuart H. Orkin, Sahand Hormoz, Fernando D. Camargo - Cell 2020 cited by 349
- An Erythroid Enhancer of BCL11A Subject to Genetic Variation Determines Fetal Hemoglobin Level
Authors: Daniel E. Bauer, Sophia C. Kamran, Samuel Lessard, Jian Xu, Yuko Fujiwara, Carrie Lin, Zhen Shao, Matthew C. Canver, Elenoe C. Smith, Luca Pinello, Peter J. Sabo, Jeff Vierstra, Richard A. Voit, Guo‐Cheng Yuan, Matthew H. Porteus, J Stamatoyannopoulos, Guillaume Lettre, Stuart H. Orkin - Science 2013 cited by 673
- Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch
Authors: Nan Liu, Victoria V. Hargreaves, Qian Zhu, Jesse V. Kurland, Jiyoung A. Hong, Woojin Kim, Falak Sher, Claudio Macias-Treviño, Julia M. Rogers, Ryo Kurita, Yukio Nakamura, Guo‐Cheng Yuan, Daniel E. Bauer, Jian Xu, Martha L. Bulyk, Stuart H. Orkin - Cell 2018 cited by 503
- Epigenetic memory in induced pluripotent stem cells
Authors: K. Kim, Akiko Doi, Bo Wen, Kelvin S. Ng, Robert Chunhua Zhao, Patrick Cahan, Jonghwan Kim, Martin J. Aryee, Hong Ji, Lauren I. R. Ehrlich, Akiko Yabuuchi, Ayumu Takeuchi, K. C. Cunniff, H. Hongguang, Shannon McKinney‐Freeman, Olaia Naveiras, Taeyeong Yoon, Rafael A. Irizarry, Namyoung Jung, Jun Seita, Jacob H. Hanna, Peter Murakami, Rudolf Jaenisch, Ralph Weissleder, Stuart H. Orkin, Irving L. Weissman, Andrew P. Feinberg, George Q. Daley - Nature 2010 cited by 2,307
- Human Fetal Hemoglobin Expression Is Regulated by the Developmental Stage-Specific Repressor BCL11A
Authors: Vijay G. Sankaran, Tobias Menne, Jian Xu, Thomas E. Akie, Guillaume Lettre, Ben Van Handel, Hanna Mikkola, Joel N. Hirschhorn, Alan Cantor, Stuart H. Orkin - Science 2008 cited by 911
- EZH1 Mediates Methylation on Histone H3 Lysine 27 and Complements EZH2 in Maintaining Stem Cell Identity and Executing Pluripotency
Authors: Xiaohua Shen, Yingchun Liu, Yu-Jung Hsu, Yuko Fujiwara, Jonghwan Kim, Xiaohong Mao, Guo‐Cheng Yuan, Stuart H. Orkin - Molecular Cell 2008 cited by 1,010
- Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis
Authors: Semir Beyaz, Charlie Chung, Haiwei Mou, Khristian E. Bauer-Rowe, Michael E. Xifaras, Ilgin Ergin, Lenka Dohnalová, Moshe Biton, Karthik Shekhar, Onur Eskiocak, Katherine Papciak, Kadir Ozler, Mohammad Almeqdadi, Brian Yueh, Miriam R. Fein, Damodaran Annamalai, Eider Valle-Encinas, Ayşegül Demirhan Erdemir, Karoline Dogum, Vyom Shah, Aybuke Alici-Garipcan, Hannah V. Meyer, Deniz M. Özata, Eran Elinav, Alper Küçükural, Pawan Kumar, Jeremy P. McAleer, James G. Fox, Christoph A. Thaiss, Aviv Regev, Jatin Roper, Stuart H. Orkin, Ömer Yılmaz - Cell stem cell 2021 cited by 138
- Epigenetic Antagonism between Polycomb and SWI/SNF Complexes during Oncogenic Transformation
Authors: Boris G. Wilson, Xi Wang, Xiaohua Shen, Elizabeth S. McKenna, Madeleine E. Lemieux, Yoon-Jae Cho, Edward C. Koellhoffer, Scott L. Pomeroy, Stuart H. Orkin, Charles W.M. Roberts - Cancer Cell 2010 cited by 641
- Genome-wide association study shows BCL11A associated with persistent fetal hemoglobin and amelioration of the phenotype of β-thalassemia
Authors: Manuela Uda, Renzo Galanello, Serena Sanna, Guillaume Lettre, Vijay G. Sankaran, Wei‐Min Chen, Gianluca Usala, Fabio Busonero, Andrea Maschio, Giuseppe Albai, Maria Grazia Piras, Natascia Sestu, Sandra Lai, Mariano Dei, Antonella Mulas, Laura Crisponi, Silvia Naitza, Isadora Asunis, Manila Deiana, Ramaiah Nagaraja, Lucia Perseu, Stefania Satta, Maria Dolores Cipollina, Carla Sollaino, Paolo Moi, Joel N. Hirschhorn, Stuart H. Orkin, Gonçalo R. Abecasis, David Schlessinger, Antonio Cao - National Academy of Sciences, Proceedings of the National Academy of Sciences 2008 cited by 672
- Transcription factors LRF and BCL11A independently repress expression of fetal hemoglobin
Authors: Takeshi Masuda, Xin Wang, Manami Maeda, Matthew C. Canver, Falak Sher, Alister P. W. Funnell, Chris Fisher, Maria Suciu, Gabriella E. Martyn, Laura J. Norton, Catherine Zhu, Ryo Kurita, Yukio Nakamura, Jian Xu, Douglas R. Higgs, Merlin Crossley, Daniel E. Bauer, Stuart H. Orkin, Peter V. Kharchenko, Takahiro Maeda - Science 2016 cited by 378
- ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling
Authors: Jochen C. Hartner, Carl R. Walkley, Jun Lü, Stuart H. Orkin - Nature Immunology 2008 cited by 486
- Live-animal imaging of native haematopoietic stem and progenitor cells
Authors: Constantina Christodoulou, Joel A. Spencer, Shu-Chi Yeh, Raphaël Turcotte, Konstantinos D. Kokkaliaris, Riccardo Panero, Azucena Ramos, Guoji Guo, Negar Seyedhassantehrani, Tatiana V. Esipova, Sergei A. Vinogradov, Sarah Rudzinskas, Yi Zhang, Archibald S. Perkins, Stuart H. Orkin, Raffaele Calogero, Timm Schroeder, Charles P. Lin, Fernando D. Camargo - Nature 2020 cited by 246
- MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets
Authors: Zhen Shao, Yijing Zhang, Guo‐Cheng Yuan, Stuart H. Orkin, David J. Waxman - Genome biology 2012 cited by 459
- SWI/SNF-mutant cancers depend on catalytic and non-catalytic activity of EZH2
Authors: Kimberly H. Kim, Woojin Kim, Thomas P. Howard, Francisca Vázquez, Aviad Tsherniak, Jennifer N. Wu, Weishan Wang, Jeffrey R. Haswell, Loren D. Walensky, William C. Hahn, Stuart H. Orkin, Charles W.M. Roberts - Nature Medicine 2015 cited by 412
- Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based RNAi Library
Authors: Jean‐François Rual, Julián Cerón, John Koreth, Tong Hao, Anne‐Sophie Nicot, Tomoko Hirozane-Kishikawa, Jean Vandenhaute, Stuart H. Orkin, David E. Hill, Sander van den Heuvel, Marc Vidal - Genome Research 2004 cited by 978
- MicroRNA-21 Promotes Fibrosis of the Kidney by Silencing Metabolic Pathways
Authors: B. Nelson Chau, Cuiyan Xin, Jochen C. Hartner, Shuyu Ren, Ana P. Castaño, Geoffrey Linn, Jian Li, Phong T. Tran, Vivek Kaimal, Xinqiang Huang, Aaron N. Chang, Shenyang Li, Aarti Kalra, Mónica Grafals, Didier Portilla, Deidre A. MacKenna, Stuart H. Orkin, Jeremy S. Duffield - Science Translational Medicine 2012 cited by 581
- Analyzing CRISPR genome-editing experiments with CRISPResso
Authors: Luca Pinello, Matthew C. Canver, Megan D. Hoban, Stuart H. Orkin, Donald B. Kohn, Daniel E. Bauer, Guo‐Cheng Yuan - Nature Biotechnology 2016 cited by 498
- Transcription control by the ENL YEATS domain in acute leukaemia
Authors: Michael A. Erb, Thomas G. Scott, Bin E. Li, Huafeng Xie, Joshiawa Paulk, Hyuk‐Soo Seo, Amanda Souza, Justin M. Roberts, Shiva Dastjerdi, Dennis L. Buckley, Neville E. Sanjana, Ophir Shalem, Behnam Nabet, Rhamy Zeid, Nana K. Offei-Addo, Sirano Dhe‐Paganon, Feng Zhang, Stuart H. Orkin, Georg E. Winter, James E. Bradner - Nature 2017 cited by 328
- Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma
Authors: Jennifer A. Perry, Adam Kieżun, Peter Tonzi, Eliezer M. Van Allen, Scott L. Carter, Sylvan C. Baca, Glenn S. Cowley, Ami S. Bhatt, Esther Rheinbay, Chandra Sekhar Pedamallu, Elena Helman, Amaro Taylor‐Weiner, Aaron McKenna, David S. DeLuca, Michael S. Lawrence, Lauren Ambrogio, Carrie Sougnez, Andrey Sivachenko, Loren D. Walensky, Nikhil Wagle, Jaume Mora, Carmen de Torres, Cinzia Lavarino, Simone dos Santos Aguiar, José Andrés Yunes, Sílvia Regina Brandalise, Gabriela Mercado, Jorge Meléndez-Zajgla, Rocío Cárdenas‐Cardós, Liliana Velasco‐Hidalgo, Charles W.M. Roberts, Levi A. Garraway, Carlos Rodríguez‐Galindo, Stacey Gabriel, Eric S. Lander, Todd R. Golub, Stuart H. Orkin, Gad Getz, Katherine A. Janeway - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 cited by 501
- Mouse model of X–linked chronic granulomatous disease, an inherited defect in phagocyte superoxide production
Authors: Jonathan Pollock, David A. Williams, Mary A. Gifford, Ling Lin Li, Xunxiang Du, Jason S. Fisherman, Stuart H. Orkin, Claire M. Doerschuk, Mary C. Dinauer - Nature Genetics 1995 cited by 927
