Amaro Taylor‐Weiner
Active 2012–2025
- Also published as
- Amaro Taylor-Weiner · Amaro-Taylor Weiner
- 57
- Papers
- 18,303
- Citations
- 42
- h-index
- 51
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Medicine56.7%
- Biochemistry, Genetics and Molecular Biology33.4%
- Computer Science2.5%
- Engineering2.4%
- Immunology and Microbiology2.2%
- Neuroscience1.7%
- Other1.1%
Topics
- Cancer Genomics and Diagnostics6.5%
- Cancer Cells and Metastasis4.4%
- Lymphoma Diagnosis and Treatment4%
- Cancer Immunotherapy and Biomarkers3.1%
- Chronic Lymphocytic Leukemia Research2.8%
- Melanoma and MAPK Pathways2.1%
- Other77.1%
Coauthors
- Gad Getz17
- Chip Stewart15
- Eliezer M. Van Allen14
- Scott L. Carter14
- Mara Rosenberg12
- Kristian Cibulskis10
- Michael S. Lawrence10
- Aaron McKenna8
- Ilan Wapinski7
- Stacey Gabriel7
- Dinkar Juyal6
- Ignaty Leshchiner6
- Michael Montalto6
- Murray B. Resnick6
- Sara Seepo6
- Aaditya Prakash5
- Andrew Dunford5
- Brendan Reardon5
- Carrie Sougnez5
- Eugen Tausch5
- Limin Yu5
- Nikhil Wagle5
- Aaron R. Thorner4
- Adam Tracy4
All papers
- Prospective Derivation of a Living Organoid Biobank of Colorectal Cancer Patients
Authors: Marc van de Wetering, Hayley E. Francies, Joshua M. Francis, Gergana Bounova, Francesco Iorio, Apollo Pronk, Winan J. van Houdt, Joost van Gorp, Amaro Taylor‐Weiner, Lennart Kester, Anne McLaren-Douglas, Joyce Blokker, Sridevi Jaksani, Sina Bartfeld, Richard Volckman, Peter van Sluis, Vivian Li, Sara Seepo, Chandra Sekhar Pedamallu, Kristian Cibulskis, Scott L. Carter, Aaron McKenna, Michael S. Lawrence, Lee Lichtenstein, Chip Stewart, Jan Köster, Rogier Versteeg, Alexander van Oudenaarden, Julio Sáez-Rodríguez, Robert G.J. Vries, Gad Getz, Lodewyk F.A. Wessels, Michael R. Stratton, Ultan McDermott, Matthew Meyerson, Mathew J. Garnett, Hans Clevers - Cell 2015 cited by 2,472
- Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes
Authors: Bjoern Chapuy, Chip Stewart, Andrew Dunford, Jaegil Kim, Atanas Kamburov, Robert Redd, Mike S. Lawrence, Margaretha G.M. Roemer, Amy J. Li, Marita Ziepert, Annette M. Staiger, Jeremiah A. Wala, Matthew D. Ducar, Ignaty Leshchiner, Ester Rheinbay, Amaro Taylor‐Weiner, Caroline A. Coughlin, Julian M. Hess, Chandra Sekhar Pedamallu, Dimitri Livitz, Daniel Rosebrock, Mara Rosenberg, Adam Tracy, Heike Horn, Paul Van Hummelen, Andrew L. Feldman, Brian K. Link, Anne J. Novak, James R. Cerhan, Thomas M. Habermann, Reiner Siebert, Andreas Rosenwald, Aaron R. Thorner, Matthew Meyerson, Todd R. Golub, Rameen Beroukhim, Gerald Wulf, German Ott, Scott J. Rodig, Stefano Monti, Donna Neuberg, Markus Loeffler, Michael Pfreundschuh, Lorenz Trümper, Gad Getz, Margaret A. Shipp - Nature Medicine 2018 cited by 1,972
- Integrated genomic characterization of oesophageal carcinoma
Authors: Young Soo Park, Jihun Kim, Rebecca Carlsen, Reanne Bowlby, Marco A. Marra, Robert A. Holt, Steven J. M. Jones, Adrian Ally, Denise Brooks, Angela Tam, Miruna Balasundaram, Payal Sipahimalani, Haiyan I. Li, Karen L. Mungall, Richard A. Moore, Tina Wong, Reanne Bowlby, Eric Chuah, Michael Mayo, Jacqueline E. Schein, Yussanne Ma, Katayoon Kasaian, Noreen Dhalla, Andrew J. Mungall, A. Gordon Robertson, Nina Thiessen, Robert D. Odze, Matthew Meyerson, Robert D. Odze, Nils Gehlenborg, Kristian Cibulskis, Andrew D. Cherniack, Michael S. Lawrence, Jaegil Kim, Timothy Defrietas, Michael S. Noble, Michael Lawrence, Doug Voet, Andrew Dunford, Juliann Shih, David I. Heiman, Amaro Taylor-Weiner, Gad Getz, Eric Lander, Lynda Chin, Carrie Cibulskis, Bradley A. Murray, Pei Lin, Andrew D. Cherniack, Paz Polak, Susan Bullman, Gad Getz, Scott Frazer, Chandra Sekhar Pedamallu, Rameen Beroukhim, Gordon Saksena, Chip Stewart, Stacey B. Gabriel, Stacey Gabriel, Samuel R. Meier, Juok Cho, Hailei Zhang, Steven E. Schumacher, Matthew Meyerson, Chandra Sekhar Pedamallu, Rameen Beroukhim, Susan Bullman, Juliann Shih, Andrew D. Cherniack, Sarah Derks, Adam J. Bass, Juliann Shih, Benjamin J. Raphael, Alexandra M. Wong, Hsin-Ta Wu, Benjamin J. Raphael, Joseph E. Willis, Joseph E. Willis, Adam J. Bass, Sarah Derks, Shannon J. McCall, Crystal Cates, Katherine Garman, Alexis Sharp, Maciej Wiznerowicz, Maciej Wiznerowicz, Michael Parfenov, Xiaojia Ren, Angeliki Pantazi, Melanie Kucherlapati, Raju Kucherlapati, Angela Hadjipanayis, Angeliki Pantazi, Alexei Protopopov, Angeliki Pantazi, Xiaojia Ren, Angeliki Pantazi, Ilya Shmulevich, Ilya Shmulevich, Vésteinn Thorsson and 234 more - Nature 2017 cited by 1,890
- Human-interpretable image features derived from densely mapped cancer pathology slides predict diverse molecular phenotypes
Authors: James A. Diao, Jason K. Wang, Wan Fung Chui, Victoria Mountain, Sai Chowdary Gullapally, Ramprakash Srinivasan, Richard N. Mitchell, Benjamin Glass, Sara Hoffman, Sudha Rao, Chirag Maheshwari, Abhik Lahiri, Aaditya Prakash, Ryan McLoughlin, Jennifer K. Kerner, Murray B. Resnick, Michael Montalto, Aditya Khosla, Ilan Wapinski, Andrew H. Beck, Hunter Elliott, Amaro Taylor‐Weiner - Nature Communications 2021 cited by 283
- Genomic Characterization of Brain Metastases Reveals Branched Evolution and Potential Therapeutic Targets
Authors: Priscilla K. Brastianos, Scott L. Carter, Sandro Santagata, Daniel P. Cahill, Amaro Taylor‐Weiner, Robert T. Jones, Eliezer M. Van Allen, Michael S. Lawrence, Peleg Horowitz, Kristian Cibulskis, Keith L. Ligon, Josep Tabernero, Joan Seoane, Elena Martínez‐Sáez, William T. Curry, Ian F. Dunn, Sun Ha Paek, Sung‐Hye Park, Aaron McKenna, Aaron Chevalier, Mara Rosenberg, Frederick G. Barker, Corey M. Gill, Paul Van Hummelen, Aaron R. Thorner, Bruce E. Johnson, Mai P. Hoang, Toni K. Choueiri, Sabina Signoretti, Carrie Sougnez, Michael S. Rabin, Nancy U. Lin, Eric P. Winer, Anat Stemmer‐Rachamimov, Matthew Meyerson, Levi A. Garraway, Stacey Gabriel, Eric S. Lander, Rameen Beroukhim, Tracy T. Batchelor, José Baselga, David N. Louis, Gad Getz, William C. Hahn - Cancer Discovery 2015 cited by 1,136
- Scaling computational genomics to millions of individuals with GPUs
Authors: Amaro Taylor‐Weiner, François Aguet, Nicholas J. Haradhvala, Sager J. Gosai, Shankara Anand, Jaegil Kim, Kristin Ardlie, Eliezer M. Van Allen, Gad Getz - Genome biology 2019 cited by 320
- Mutations driving CLL and their evolution in progression and relapse
Authors: Dan A. Landau, Eugen Tausch, Amaro Taylor‐Weiner, Chip Stewart, Johannes G. Reiter, Jasmin Bahlo, Sandra Kluth, Ivana Božić, Mike Lawrence, Sebastian Böttcher, Scott L. Carter, Kristian Cibulskis, Daniel Mertens, Carrie Sougnez, Mara Rosenberg, Julian M. Hess, Jennifer Edelmann, Sabrina Kless, Michael Kneba, Matthias Ritgen, Anna Maria Fink, Kirsten Fischer, Stacey Gabriel, Eric S. Lander, Martin A. Nowak, Hartmut Döhner, Michael Hallek, Donna Neuberg, Gad Getz, Stephan Stilgenbauer, Catherine J. Wu - Nature 2015 cited by 1,078
- Genomic correlates of response to immune checkpoint blockade in microsatellite-stable solid tumors
Authors: Diana Miao, Claire A. Margolis, Natalie I. Vokes, David Liu, Amaro Taylor‐Weiner, Stephanie A. Wankowicz, Dennis O. Adeegbe, Daniel Keliher, Bastian Schilling, Adam Tracy, Michael P. Manos, Nicole G. Chau, Glenn J. Hanna, Paz Polak, Scott J. Rodig, Sabina Signoretti, Lynette M. Sholl, Jeffrey A. Engelman, Gad Getz, Pasi A. Jänne, Robert I. Haddad, Toni K. Choueiri, David A. Barbie, Rizwan Haq, Mark M. Awad, Dirk Schadendorf, F. Stephen Hodi, Joaquim Bellmunt, Kwok‐Kin Wong, Peter S. Hammerman, Eliezer M. Van Allen - Nature Genetics 2018 cited by 696
- Genomic Profiling of Smoldering Multiple Myeloma Identifies Patients at a High Risk of Disease Progression
Authors: Mark Bustoros, Romanos Sklavenitis‐Pistofidis, Jihye Park, Robert Redd, Benny Zhitomirsky, Andrew Dunford, Karma Z. Salem, Yu‐Tzu Tai, Shankara Anand, Tarek H. Mouhieddine, Selina J Chavda, Cody J. Boehner, Liudmila Elagina, Carl Jannes Neuse, Justin Cha, Mahshid Rahmat, Amaro Taylor‐Weiner, Eliezer M. Van Allen, Shaji Kumar, Efstathis Kastritis, Ignaty Leshchiner, Elizabeth A. Morgan, Jacob P. Laubach, Tineke Casneuf, Paul G. Richardson, Nikhil C. Munshi, Kenneth C. Anderson, Lorenzo Trippa, François Aguet, Chip Stewart, Meletios Α. Dimopoulos, Kwee Yong, P. Leif Bergsagel, Salomon Manier, Gad Getz, Irene M. Ghobrial - Journal of Clinical Oncology 2020 cited by 182
- The Genetic Landscape of Clinical Resistance to RAF Inhibition in Metastatic Melanoma
Authors: Eliezer M. Van Allen, Nikhil Wagle, Antje Sucker, Daniel J. Treacy, Cory M. Johannessen, Eva M. Goetz, Chelsea S. Place, Amaro Taylor‐Weiner, Steven R. Whittaker, Gregory V. Kryukov, Eran Hodis, Mara Rosenberg, Aaron McKenna, Kristian Cibulskis, Deborah Farlow, Lisa Zimmer, Uwe Hillen, Ralf Gutzmer, Simone M. Goldinger, Selma Ugurel, Helen Gogas, Friederike Egberts, Carola Berking, Uwe Trefzer, Carmen Loquai, Benjamin Weide, Jessica C. Hassel, Stacey Gabriel, Scott L. Carter, Gad Getz, Levi A. Garraway, Dirk Schadendorf - Cancer Discovery 2013 cited by 940
- A Machine Learning Approach Enables Quantitative Measurement of Liver Histology and Disease Monitoring in NASH
Authors: Amaro Taylor‐Weiner, Harsha Pokkalla, Ling Han, Catherine Jia, Ryan S. Huss, Chuhan Chung, Hunter Elliott, Benjamin Glass, Kishalve Pethia, Oscar Carrasco‐Zevallos, Chinmay Shukla, Urmila Khettry, Robert M. Najarían, Ross Taliano, G. Mani Subramanian, Robert P. Myers, Ilan Wapinski, Aditya Khosla, Murray B. Resnick, Michael Montalto, Quentin M. Anstee, Vincent Wai‐Sun Wong, Michael Trauner, Eric Lawitz, Stephen A. Harrison, Takeshi Okanoue, Manuel Romero‐Gómez, Zachary Goodman, Rohit Loomba, Andrew H. Beck, Zobair M. Younossi - Hepatology 2021 cited by 195
- Identification of cancer driver genes based on nucleotide context
Authors: Felix Dietlein, Donate Weghorn, Amaro Taylor‐Weiner, André Richters, Brendan Reardon, David Liu, Eric S. Lander, Eliezer M. Van Allen, Shamil Sunyaev - Nature Genetics 2020 cited by 275
- The Genomic Landscape of Pediatric Ewing Sarcoma
Authors: Brian D. Crompton, Chip Stewart, Amaro Taylor‐Weiner, Gabriela Alexe, Kyle C. Kurek, Monica L. Calicchio, Adam Kieżun, Scott L. Carter, Sachet A. Shukla, Swapnil Mehta, Aaron R. Thorner, Carmen de Torres, Cinzia Lavarino, Mariona Suñol, Aaron McKenna, Andrey Sivachenko, Kristian Cibulskis, Michael S. Lawrence, Petar Stojanov, Mara Rosenberg, Lauren Ambrogio, Daniel Auclair, Sara Seepo, Brendan Blumenstiel, Matthew DeFelice, Iván Imaz-Rosshandler, Angela Schwarz‐Cruz y Celis, Miguel N. Rivera, Carlos Rodríguez‐Galindo, Mark D. Fleming, Todd R. Golub, Gad Getz, Jaume Mora, Kimberly Stegmaier - Cancer Discovery 2014 cited by 589
- Molecular map of chronic lymphocytic leukemia and its impact on outcome
Authors: Binyamin A. Knisbacher, Ziao Lin, Cynthia K. Hahn, Ferran Nadeu, Martí Duran‐Ferrer, Kristen E. Stevenson, Eugen Tausch, Julio Delgado, Alex Barbera-Mourelle, Amaro Taylor‐Weiner, Pablo Bousquets‐Muñoz, Ander Díaz‐Navarro, Andrew Dunford, Shankara Anand, Helene Kretzmer, Jesús Gutiérrez‐Abril, Sara López-Tamargo, Stacey M. Fernandes, Clare Sun, Mariela Sivina, Laura Z. Rassenti, Christof Schneider, Shuqiang Li, Laxmi Parida, Alexander Meissner, François Aguet, Jan A. Burger, Adrian Wiestner, Thomas J. Kipps, Jennifer R. Brown, Michael Hallek, Chip Stewart, Donna Neuberg, José I. Martín‐Subero, Xosé S. Puente, Stephan Stilgenbauer, Catherine J. Wu, Elı́as Campo, Gad Getz - Nature Genetics 2022 cited by 148
- Additive MIL: Intrinsically Interpretable Multiple Instance Learning for Pathology
Authors: Syed Ashar Javed, Dinkar Juyal, Harshith Padigela, Amaro Taylor-Weiner, Limin Yu, Aaditya Prakash - Advances in Neural Information Processing Systems 35, NeurIPS 2022 cited by 113
- Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma
Authors: Jennifer A. Perry, Adam Kieżun, Peter Tonzi, Eliezer M. Van Allen, Scott L. Carter, Sylvan C. Baca, Glenn S. Cowley, Ami S. Bhatt, Esther Rheinbay, Chandra Sekhar Pedamallu, Elena Helman, Amaro Taylor‐Weiner, Aaron McKenna, David S. DeLuca, Michael S. Lawrence, Lauren Ambrogio, Carrie Sougnez, Andrey Sivachenko, Loren D. Walensky, Nikhil Wagle, Jaume Mora, Carmen de Torres, Cinzia Lavarino, Simone dos Santos Aguiar, José Andrés Yunes, Sílvia Regina Brandalise, Gabriela Mercado, Jorge Meléndez-Zajgla, Rocío Cárdenas‐Cardós, Liliana Velasco‐Hidalgo, Charles W.M. Roberts, Levi A. Garraway, Carlos Rodríguez‐Galindo, Stacey Gabriel, Eric S. Lander, Todd R. Golub, Stuart H. Orkin, Gad Getz, Katherine A. Janeway - National Academy of Sciences, Proceedings of the National Academy of Sciences 2014 cited by 501
- Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome
Authors: Erin M. Parry, Ignaty Leshchiner, Romain Guièze, Connor Johnson, Eugen Tausch, Sameer A. Parikh, Camilla K. Lemvigh, Julien Broséus, Sébastien Hergalant, Conor Messer, Filippo Utro, Chaya Levovitz, Kahn Rhrissorrakrai, Liang Li, Daniel Rosebrock, Shanye Yin, Stephanie Deng, Kara Slowik, Raquel A. Jacobs, Teddy Huang, Shuqiang Li, Geoff Fell, Robert Redd, Ziao Lin, Binyamin A. Knisbacher, Dimitri Livitz, Christof Schneider, Neil Ruthen, Liudmila Elagina, Amaro Taylor‐Weiner, Bria Persaud, Aina Zurita Martinez, Stacey M. Fernandes, Noelia Purroy, Annabelle Anandappa, Jialin Ma, Julian M. Hess, Laura Z. Rassenti, Thomas J. Kipps, Nitin Jain, William G. Wierda, Florence Cymbalista, Pierre Feugier, Neil E. Kay, Kenneth J. Livak, Brian P. Danysh, Chip Stewart, Donna Neuberg, Matthew S. Davids, Jennifer R. Brown, Laxmi Parida, Stephan Stilgenbauer, Gad Getz, Catherine J. Wu - Nature Medicine 2023 cited by 83
- MAP Kinase Pathway Alterations in BRAF -Mutant Melanoma Patients with Acquired Resistance to Combined RAF/MEK Inhibition
Authors: Nikhil Wagle, Eliezer M. Van Allen, Daniel J. Treacy, Dennie T. Frederick, Zachary A. Cooper, Amaro Taylor‐Weiner, Mara Rosenberg, Eva M. Goetz, Ryan J. Sullivan, Deborah Farlow, Dennis C. Friedrich, Kristin Anderka, Danielle Perrin, Cory M. Johannessen, Aaron McKenna, Kristian Cibulskis, Gregory V. Kryukov, Eran Hodis, Donald P. Lawrence, Sheila Fisher, Gad Getz, Stacey Gabriel, Scott L. Carter, Keith T. Flaherty, Jennifer A. Wargo, Levi A. Garraway - Cancer Discovery 2013 cited by 473
- A Local Glutamate-Glutamine Cycle Sustains Synaptic Excitatory Transmitter Release
Authors: Hiroaki TANI, Chris G. Dulla, Zoya Farzampour, Amaro Taylor‐Weiner, John R. Huguenard, Richard J. Reimer - Neuron 2014 cited by 210
- Genetic and Clonal Dissection of Murine Small Cell Lung Carcinoma Progression by Genome Sequencing
Authors: David G. McFadden, Thales Papagiannakopoulos, Amaro Taylor‐Weiner, Chip Stewart, Scott L. Carter, Kristian Cibulskis, Arjun Bhutkar, Aaron McKenna, Alison L. Dooley, Amanda Vernon, Carrie Sougnez, Scott Malstrom, Megan Heimann, Jennifer Park, Frances S. Chen, Anna F. Farago, Talya L. Dayton, Erica Shefler, Stacey Gabriel, Gad Getz, Tyler Jacks - Cell 2014 cited by 303
- Exome sequencing identifies BRAF mutations in papillary craniopharyngiomas
Authors: Priscilla K. Brastianos, Amaro Taylor‐Weiner, Peter Manley, Robert T. Jones, Dora Dias‐Santagata, Aaron R. Thorner, Michael S. Lawrence, Fausto J. Rodríguez, Lindsay A. Bernardo, Laura Schubert, Ashwini Sunkavalli, Nick Shillingford, Monica L. Calicchio, Hart G.W. Lidov, Hala Taha, María Martínez-Lage, Mariarita Santi, Phillip B. Storm, John Y. K. Lee, James N. Palmer, Nithin D. Adappa, R. Michael Scott, Ian F. Dunn, Edward R. Laws, Chip Stewart, Keith L. Ligon, Mai P. Hoang, Paul Van Hummelen, William C. Hahn, David N. Louis, Adam Resnick, Mark W. Kieran, Gad Getz, Sandro Santagata - Nature Genetics 2014 cited by 512
- Clonal evolution in patients with chronic lymphocytic leukaemia developing resistance to BTK inhibition
Authors: Jan A. Burger, Dan A. Landau, Amaro Taylor‐Weiner, Ivana Božić, Huidan Zhang, Kristopher A. Sarosiek, Lili Wang, Chip Stewart, Jean Fan, Julia Hoellenriegel, Mariela Sivina, Adrian M. Dubuc, Cameron Fraser, Yulong Han, Shuqiang Li, Kenneth J. Livak, Lihua Zou, Youzhong Wan, Sergej Konoplev, Carrie Sougnez, Jennifer R. Brown, Lynne V. Abruzzo, Scott L. Carter, Michael J. Keating, Matthew S. Davids, William G. Wierda, Kristian Cibulskis, Thorsten Zenz, Lillian Werner, Paola Dal Cin, Peter Kharchencko, Donna Neuberg, Hagop M. Kantarjian, Eric S. Lander, Stacey Gabriel, Susan O’Brien, Anthony Letai, David A. Weitz, Martin A. Nowak, Gad Getz, Catherine J. Wu - Nature Communications 2016 cited by 346
- AI-based automation of enrollment criteria and endpoint assessment in clinical trials in liver diseases
Authors: Janani S. Iyer, Dinkar Juyal, Quang Le, Zahil Shanis, Harsha Pokkalla, Maryam Pouryahya, Aryan Pedawi, S. Adam Stanford-Moore, Charles Biddle-Snead, Oscar Carrasco‐Zevallos, Mary Lin, Robert Egger, Sara Hoffman, Hunter Elliott, Kenneth Leidal, Robert P. Myers, Chuhan Chung, Andrew N. Billin, Timothy R. Watkins, Scott D. Patterson, Murray B. Resnick, Katy Wack, Jon Glickman, Alastair D. Burt, Rohit Loomba, Arun J. Sanyal, Ben Glass, Michael Montalto, Amaro Taylor‐Weiner, Ilan Wapinski, Andrew H. Beck - Nature Medicine 2024 cited by 42
- Paired exome analysis of Barrett's esophagus and adenocarcinoma
Authors: Matthew D. Stachler, Amaro Taylor‐Weiner, Shouyong Peng, Aaron McKenna, Agoston T. Agoston, Robert D. Odze, Jon M. Davison, Katie S. Nason, Massimo Loda, Ignaty Leshchiner, Chip Stewart, Petar Stojanov, Sara Seepo, Michael S. Lawrence, Daysha Ferrer-Torres, Jules Lin, Andrew C. Chang, Stacey Gabriel, Eric S. Lander, David G. Beer, Gad Getz, Scott L. Carter, Adam J. Bass - Nature Genetics 2015 cited by 379
