Chip Stewart
Active 2000–2025
- 84
- Papers
- 51,131
- Citations
- 63
- h-index
- 80
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Medicine51.3%
- Biochemistry, Genetics and Molecular Biology41.1%
- Immunology and Microbiology2.4%
- Agricultural and Biological Sciences1.2%
- Engineering1.1%
- Computer Science1.1%
- Other1.8%
Topics
- Cancer Genomics and Diagnostics8.2%
- Cancer Immunotherapy and Biomarkers3.3%
- Epigenetics and DNA Methylation2.8%
- Cancer Cells and Metastasis2.5%
- Lung Cancer Treatments and Mutations2.4%
- RNA modifications and cancer2.3%
- Other78.5%
Coauthors
- Gad Getz35
- Kristian Cibulskis19
- Amaro Taylor‐Weiner18
- Andrew Dunford17
- Michael S. Lawrence17
- Scott L. Carter16
- Jaegil Kim14
- Ignaty Leshchiner13
- Mara Rosenberg12
- Carrie Sougnez11
- Aaron McKenna10
- Rameen Beroukhim10
- Robert Redd10
- Daniel Rosebrock9
- Dimitri Livitz9
- Matthew Meyerson9
- Stacey Gabriel9
- Daniel Auclair8
- Julian M. Hess8
- Chandra Sekhar Pedamallu7
- Eric S. Lander7
- Petar Stojanov7
- Romanos Sklavenitis‐Pistofidis7
- Aaron R. Thorner6
All papers
- Comprehensive molecular profiling of lung adenocarcinoma
Authors: Eric A. Collisson, Barry S. Taylor, Joshua D. Campbell, Angela N. Brooks, Alice H. Berger, Juliann Chmielecki, Gad Getz, Peter S. Hammerman, Bryan Hernandez, Carrie Sougnez, Andrew D. Cherniack, Mara Rosenberg, Matthew Meyerson, Stacey B. Gabriel, Kristian Cibulskis, Jaegil Kim, Chip Stewart, Lee Lichtenstein, Eric S. Lander, Michael S. Lawrence, Marcin Imielinski, Robert C. Onofrio, Travis Zack, Elena Helman, Chandra Sekhar Pedamallu, Jill Mesirov, Gordon Saksena, Steven E. Schumacher, Scott L. Carter, Levi Garraway, Rameen Beroukhim, Juok Cho, Daniel DiCara, David Heiman, Pei Lin, William Mallard, Douglas Voet, Hailei Zhang, Lihua Zou, Michael S. Noble, Nils Gehlenborg, Helga Thorvaldsdottir, Marc-Danie Nazaire, Jim Robinson, William Lee, Marc Ladanyi, Nikolaus Schultz, Ronglai Shen, William D. Travis, B. Arman Aksoy, Giovanni Ciriello, Gideon Dresdner, Jianjiong Gao, Benjamin Gross, Venkatraman E. Seshan, Boris Reva, Rileen Sinha, S. Onur Sumer, Nils Weinhold, Chris Sander, Natasha Rekhtman, Maureen Zakowski, Valerie W. Rusch, David G. Beer, Leslie Cope, Ludmila Danilova, James G. Herman, Stephen B. Baylin, Peter Illei, Edward Gabrielson, James Shin, Beverly Lee, Kristen Rodgers, Dante Trusty, Malcolm V. Brock, Chad J. Creighton, David Wheeler, Li Ding, Ramaswamy Govindan, Cyriac Kandoth, Robert Fulton, Lucinda L. Fulton, Michael D. McLellan, Richard K. Wilson, Kai Ye, Catrina C. Fronick, Christopher A. Maher, Christopher A. Miller, Michael C. Wendl, Christopher Cabanski, Elaine Mardis, Mark A. Watson, Sandra McDonald, Bryan Meyers, Raju Kucherlapati, Angela Hadjipanayis, Eran Hodis, Semin Lee, Angeliki Pantazi, Xiaojia Ren and 210 more - Nature 2014 cited by 5,918
- Prospective Derivation of a Living Organoid Biobank of Colorectal Cancer Patients
Authors: Marc van de Wetering, Hayley E. Francies, Joshua M. Francis, Gergana Bounova, Francesco Iorio, Apollo Pronk, Winan J. van Houdt, Joost van Gorp, Amaro Taylor‐Weiner, Lennart Kester, Anne McLaren-Douglas, Joyce Blokker, Sridevi Jaksani, Sina Bartfeld, Richard Volckman, Peter van Sluis, Vivian Li, Sara Seepo, Chandra Sekhar Pedamallu, Kristian Cibulskis, Scott L. Carter, Aaron McKenna, Michael S. Lawrence, Lee Lichtenstein, Chip Stewart, Jan Köster, Rogier Versteeg, Alexander van Oudenaarden, Julio Sáez-Rodríguez, Robert G.J. Vries, Gad Getz, Lodewyk F.A. Wessels, Michael R. Stratton, Ultan McDermott, Matthew Meyerson, Mathew J. Garnett, Hans Clevers - Cell 2015 cited by 2,472
- Mutational heterogeneity in cancer and the search for new cancer-associated genes
Authors: Michael S. Lawrence, Petar Stojanov, Paz Polak, Gregory V. Kryukov, Kristian Cibulskis, Andrey Sivachenko, Scott L. Carter, Chip Stewart, Craig H. Mermel, Steven A. Roberts, Adam Kieżun, Peter S. Hammerman, Aaron McKenna, Yotam Drier, Lihua Zou, Alex H. Ramos, Trevor J. Pugh, Nicolas Stransky, Elena Helman, Jaegil Kim, Carrie Sougnez, Lauren Ambrogio, Elizabeth Nickerson, Erica Shefler, Maria L. Cortés, Daniel Auclair, Gordon Saksena, Douglas Voet, Michael S. Noble, Daniel DiCara, Pei Lin, Lee Lichtenstein, David I. Heiman, Timothy R. Fennell, Marcin Imieliński, Bryan Hernandez, Eran Hodis, Sylvan C. Baca, Austin Dulak, Jens G. Lohr, Dan-Avi Landau, Catherine J. Wu, Jorge Meléndez-Zajgla, Alfredo Hidalgo‐Miranda, Amnon Koren, Steven A. McCarroll, Jaume Mora, Ryan S. Lee, Brian D. Crompton, Robert C. Onofrio, Melissa Parkin, Wendy Winckler, Kristin Ardlie, Stacey Gabriel, Charles W.M. Roberts, Jaclyn A. Biegel, Kimberly Stegmaier, Adam J. Bass, Levi A. Garraway, Matthew Meyerson, Todd R. Golub, Dmitry A. Gordenin, Shamil Sunyaev, Eric S. Lander, Gad Getz - Nature 2013 cited by 5,755
- Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma
Authors: Benjamin J. Raphael, Ralph H. Hruban, Andrew J. Aguirre, Richard A. Moffitt, Jen Jen Yeh, Chip Stewart, A. Gordon Robertson, Andrew D. Cherniack, Manaswi Gupta, Gad Getz, Stacey Gabriel, Matthew Meyerson, Carrie Cibulskis, Suzanne S. Fei, Toshinori Hinoue, Hui Shen, Peter W. Laird, Shiyun Ling, Yiling Lu, Gordon B. Mills, Rehan Akbani, Phillipe Loher, Eric Londin, Isidore Rigoutsos, Aristeidis G. Telonis, Ewan A. Gibb, Anna Goldenberg, Aziz M. Mezlini, Katherine A. Hoadley, Eric A. Collisson, Eric S. Lander, Bradley A. Murray, Julian M. Hess, Mara Rosenberg, Louis Bergelson, Hailei Zhang, Juok Cho, Grace Tiao, Jaegil Kim, Dimitri Livitz, Ignaty Leshchiner, Brendan Reardon, Eliezer M. Van Allen, Atanas Kamburov, Rameen Beroukhim, Gordon Saksena, Steven E. Schumacher, Michael S. Noble, David I. Heiman, Nils Gehlenborg, Jaegil Kim, Michael S. Lawrence, Volkan Adsay, Gloria M. Petersen, David S. Klimstra, Nabeel Bardeesy, Mark D.M. Leiserson, Reanne Bowlby, Katayoon Kasaian, İnanç Birol, Karen Mungall, Sara Sadeghi, John N. Weinstein, Paul T. Spellman, Yuexin Liu, Laufey T. Ámundadóttir, Joel E. Tepper, Aatur D. Singhi, Rajiv Dhir, Paul Drwiega, Thomas C. Smyrk, Lizhi Zhang, Paula Kim, Jay Bowen, Jessica Frick, Julie M. Gastier‐Foster, Mark Gerken, Kevin Lau, Kristen Leraas, Tara M. Lichtenberg, Nilsa C. Ramirez, Jeremy Renkel, Mark E. Sherman, Lisa Wise, Peggy Yena, Erik Zmuda, Juliann Shih, Adrian Ally, Miruna Balasundaram, Rebecca Carlsen, Andy Chu, Eric Chuah, Amanda Clarke, Noreen Dhalla, Robert A. Holt, Steven J.M. Jones, Darlene Lee, Yussanne Ma, Marco A. Marra, Michael Mayo and 171 more - Cancer Cell 2017 cited by 2,069
- Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes
Authors: Bjoern Chapuy, Chip Stewart, Andrew Dunford, Jaegil Kim, Atanas Kamburov, Robert Redd, Mike S. Lawrence, Margaretha G.M. Roemer, Amy J. Li, Marita Ziepert, Annette M. Staiger, Jeremiah A. Wala, Matthew D. Ducar, Ignaty Leshchiner, Ester Rheinbay, Amaro Taylor‐Weiner, Caroline A. Coughlin, Julian M. Hess, Chandra Sekhar Pedamallu, Dimitri Livitz, Daniel Rosebrock, Mara Rosenberg, Adam Tracy, Heike Horn, Paul Van Hummelen, Andrew L. Feldman, Brian K. Link, Anne J. Novak, James R. Cerhan, Thomas M. Habermann, Reiner Siebert, Andreas Rosenwald, Aaron R. Thorner, Matthew Meyerson, Todd R. Golub, Rameen Beroukhim, Gerald Wulf, German Ott, Scott J. Rodig, Stefano Monti, Donna Neuberg, Markus Loeffler, Michael Pfreundschuh, Lorenz Trümper, Gad Getz, Margaret A. Shipp - Nature Medicine 2018 cited by 1,972
- Comprehensive molecular characterization of clear cell renal cell carcinoma Open
Authors: Chad J. Creighton, Margaret Morgan, Preethi H. Gunaratne, David A. Wheeler, Richard A. Gibbs, Donna Muzny, Caleb Davis, Liu Xi, Kyle Chang, Nipun Kakkar, Lisa R. Treviño, Susan Benton, Jeffrey G. Reid, Donna Morton, Harsha Doddapaneni, Yi Han, Lora Lewis, Huyen Dinh, Christie Kovar, Yiming Zhu, Jireh Santibanez, Min Wang, Walker Hale, Divya Kalra, Weimin Xiao, A. Gordon Robertson, Andy Chu, Hye-Jung E. Chun, Andrew J. Mungall, Payal Sipahimalani, Dominik Stoll, Adrian Ally, Miruna Balasundaram, Yaron S. N. Butterfield, Rebecca Carlsen, Candace Carter, Eric Chuah, Robin J. N. Coope, Noreen Dhalla, Sharon Gorski, Ranabir Guin, Carrie Hirst, Martin Hirst, Robert A. Holt, Chandra Lebovitz, Darlene Lee, Haiyan I. Li, Michael Mayo, Richard A. Moore, Erin Pleasance, Patrick Plettner, Jacqueline E. Schein, Arash Shafiei, Jared R. Slobodan, Angela Tam, Nina Thiessen, Richard J. Varhol, Natasja Wye, Yongjun Zhao, Inanc Birol, Steven J. M. Jones, Marco A. Marra, Rameen Beroukhim, Kristian Cibulskis, Gad Getz, Michael S. Lawrence, Carrie Sougnez, Scott L. Carter, Andrey Sivachenko, Lee Lichtenstein, Chip Stewart, Doug Voet, Sheila Fisher, Stacey B. Gabriel, Eric Lander, Steve E. Schumacher, Barbara Tabak, Gordon Saksena, Robert C. Onofrio, Andrew D. Cherniack, Jeff Gentry, Kristin Ardlie, Matthew Meyerson, Michael S. Noble, Daniel DiCara, Hailei Zhang, Juok Cho, David I. Heiman, Nils Gehlenborg, William Mallard, Pei Lin, Scott Frazer, Petar Stojanov, Yingchun Liu, Lihua Zhou, Jaegil Kim, Lynda Chin, Sabina Signoretti, Fabio Vandin Hsin-Ta Wu, Benjamin J. Raphael and 192 more - Nature, Nat. 2013 cited by 3,576
- Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors
Authors: Viktor A. Adalsteinsson, Gavin Ha, Samuel S. Freeman, Atish D. Choudhury, Daniel G. Stover, Heather A. Parsons, Gregory Gydush, Sarah C. Reed, Denisse Rotem, Justin Rhoades, D. V. Loginov, Dimitri Livitz, Daniel Rosebrock, Ignaty Leshchiner, Jaegil Kim, Chip Stewart, Mara Rosenberg, Joshua M. Francis, Cheng‐Zhong Zhang, Ofir Cohen, Coyin Oh, Huiming Ding, Paz Polak, Maxwell R. Lloyd, Sairah Mahmud, Karla Helvie, Margaret S. Merrill, Rebecca A. Santiago, Edward O’Connor, Seong Ho Jeong, Rachel Leeson, Rachel Barry, Joseph F. Kramkowski, Zhenwei Zhang, L Polácek, Jens G. Lohr, Molly Schleicher, Emily Lipscomb, Andrea Saltzman, Nelly Oliver, Lori Marini, Adrienne G. Waks, Lauren C. Harshman, Sara M. Tolaney, Eliezer M. Van Allen, Eric P. Winer, Nancy U. Lin, Mari Nakabayashi, Mary‐Ellen Taplin, Cory M. Johannessen, Levi A. Garraway, Todd R. Golub, Jesse S. Boehm, Nikhil Wagle, Gad Getz, J. Christopher Love, Matthew Meyerson - Nature Communications 2017 cited by 1,095
- Comprehensive molecular characterization of urothelial bladder carcinoma Open
Authors: John N. Weinstein, John N. Weinstein, Xiaoping Su, Nianxiang Zhang, Wenyi Wang, Bradley M. Broom, Zhenlin Ju, Jiexin Zhang, Michael T. Ryan, Thomas Motter, Hui Yao, Wenbin Liu, Bradley M. Broom, Philip L. Lorenzi, Nianxiang Zhang, Rehan Akbani, Roeland Verhaak, Bo Peng, Kenna R. Mills Shaw, Seth Lerner, Gordon B. Mills, Zhenlin Ju, Wenbin Liu, Michael Ittman, Patricia Castro, Whitney D. McClenden, David J. McConkey, David J. McConkey, Weiguo Jian, Carolyn Smith, David J. Kwiatkowski, Andrew D. Cherniack, Weiguo Jian, Chandra Sekhar Pedamallu, Richard C. Gibbs, Seth P. Lerner, Kristian Cibulskis, Patricia Garrido Castro, Andrey Sivachenko, Chip Stewart, Michael S. Lawrence, Whitney D. McClenden, Margaret Morgan, Richard C. Gibbs, Scott L. Carter, Chad J. Creighton, Lawrence A. Donehower, Chad J. Creighton, C. Smith, Ami S. Bhatt, Trevor Pugh, Gordon Saksena, Lee Lichtenstein, Michael S. Lawrence, Carrie Sougnez, Kristian Cibulskis, Daniel DiCara, Petar Stojanov, Steven E. Schumacher, Doug Voet, Yingchun Liu, Jaegil Kim, Petar Stojanov, Doug Voet, Pei Lin, Hailei Zhang, Scott L. Carter, Scott Frazer, Michael S. Noble, Daniel DiCara, Lihua Zou, Bernard H. Bochner, Nils Gehlenborg, Ilana R. Garcia-Grossman, David I. Heiman, Juok Cho, Rameen Beroukhim, Dmitry A. Gordenin, David J. Kwiatkowski, Ami S. Bhatt, Andrey Sivachenko, Joonil Jung, Chip Stewart, Andrew D. Cherniack, Samuel S. Freeman, Eric Lander, Michael S. Noble, Tod D. Casasent, David J. Van Den Berg, David J. Kwiatkowski, Nikolaus Schultz, David J. Kwiatkowski, Jianjiong Gao, Anders Jacobsen, B. Arman Aksoy, Ami S. Bhatt, Petar Stojanov, Chandra Sekhar Pedamallu, Rameen Beroukhim, William Lee and 194 more - Nature, Nat. 2014 cited by 3,086
- Patterns of somatic structural variation in human cancer genomes
Authors: Yilong Li, Nicola D. Roberts, Jeremiah A. Wala, Ofer Shapira, Steven E. Schumacher, Kiran Kumar, Ekta Khurana, Sebastian M. Waszak, Jan O. Korbel, James E. Haber, Marcin Imielinski, PCAWG Structural Variation Working Group, Kadir C. Akdemir, Eva G. Álvarez, Adrian Baez-Ortega, Rameen Beroukhim, Paul C. Boutros, David D.L. Bowtell, Benedikt Brors, Kathleen H. Burns, Peter J. Campbell, Kin Chan, Ken Chen, Isidro Cortés‐Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Lars Feuerbach, J. Lynn Fink, Milana Frenkel‐Morgenstern, Dale W. Garsed, Mark Gerstein, Dmitry A. Gordenin, David Haan, James E. Haber, Julian M. Hess, Barbara Hutter, Marcin Imieliński, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Jan O. Korbel, Kiran Kumar, Eunjung Alice Lee, Jake June-Koo Lee, Yilong Li, Andy G. Lynch, Geoff Macintyre, Florian Markowetz, Iñigo Martincorena, Alexander Martinez-Fundichely, Matthew Meyerson, Satoru Miyano, Hidewaki Nakagawa, Fábio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Nicola D. Roberts, Steven A. Roberts, Bernardo Rodriguez-Martin, Steven E. Schumacher, Ralph Scully, Mark Shackleton, Nikos Sidiropoulos, Lina Sieverling, Chip Stewart, David Torrents, José M. C. Tubío, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Joachim Weischenfeldt, Lixing Yang, Xiaotong Yao, Sung-Soo Yoon, Jorge Zamora, Cheng-Zhong Zhang, Joachim Weischenfeldt, Rameen Beroukhim, Peter J. Campbell, Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams, Nishant Agrawal, Keun Soo Ahn, Sung‐Min Ahn, Hiroshi Aikata, Rehan Akbani, Kadir C. Akdemir, Hikmat Al‐Ahmadie, Sultan T. Al‐Sedairy and 1,311 more - Nature 2020 cited by 998
- Integrated genomic characterization of oesophageal carcinoma
Authors: Young Soo Park, Jihun Kim, Rebecca Carlsen, Reanne Bowlby, Marco A. Marra, Robert A. Holt, Steven J. M. Jones, Adrian Ally, Denise Brooks, Angela Tam, Miruna Balasundaram, Payal Sipahimalani, Haiyan I. Li, Karen L. Mungall, Richard A. Moore, Tina Wong, Reanne Bowlby, Eric Chuah, Michael Mayo, Jacqueline E. Schein, Yussanne Ma, Katayoon Kasaian, Noreen Dhalla, Andrew J. Mungall, A. Gordon Robertson, Nina Thiessen, Robert D. Odze, Matthew Meyerson, Robert D. Odze, Nils Gehlenborg, Kristian Cibulskis, Andrew D. Cherniack, Michael S. Lawrence, Jaegil Kim, Timothy Defrietas, Michael S. Noble, Michael Lawrence, Doug Voet, Andrew Dunford, Juliann Shih, David I. Heiman, Amaro Taylor-Weiner, Gad Getz, Eric Lander, Lynda Chin, Carrie Cibulskis, Bradley A. Murray, Pei Lin, Andrew D. Cherniack, Paz Polak, Susan Bullman, Gad Getz, Scott Frazer, Chandra Sekhar Pedamallu, Rameen Beroukhim, Gordon Saksena, Chip Stewart, Stacey B. Gabriel, Stacey Gabriel, Samuel R. Meier, Juok Cho, Hailei Zhang, Steven E. Schumacher, Matthew Meyerson, Chandra Sekhar Pedamallu, Rameen Beroukhim, Susan Bullman, Juliann Shih, Andrew D. Cherniack, Sarah Derks, Adam J. Bass, Juliann Shih, Benjamin J. Raphael, Alexandra M. Wong, Hsin-Ta Wu, Benjamin J. Raphael, Joseph E. Willis, Joseph E. Willis, Adam J. Bass, Sarah Derks, Shannon J. McCall, Crystal Cates, Katherine Garman, Alexis Sharp, Maciej Wiznerowicz, Maciej Wiznerowicz, Michael Parfenov, Xiaojia Ren, Angeliki Pantazi, Melanie Kucherlapati, Raju Kucherlapati, Angela Hadjipanayis, Angeliki Pantazi, Alexei Protopopov, Angeliki Pantazi, Xiaojia Ren, Angeliki Pantazi, Ilya Shmulevich, Ilya Shmulevich, Vésteinn Thorsson and 234 more - Nature 2017 cited by 1,890
- Calling Somatic SNVs and Indels with Mutect2
Authors: David Benjamin, Takuto Sato, Kristian Cibulskis, Gad Getz, Chip Stewart, Lee Lichtenstein - 2019 cited by 759
- Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
Authors: Isidro Cortés-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L. Jung, Lixing Yang, Dmitry A. Gordenin, Leszek J. Klimczak, Cheng‐Zhong Zhang, David Pellman, PCAWG Structural Variation Working Group, Kadir C. Akdemir, Eva G. Álvarez, Adrian Baez‐Ortega, Rameen Beroukhim, Paul C. Boutros, David D.L. Bowtell, Benedikt Brors, Kathleen H. Burns, Peter J. Campbell, Kin Chan, Ken Chen, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Lars Feuerbach, J. Lynn Fink, Milana Frenkel-Morgenstern, Dale W. Garsed, Mark Gerstein, Dmitry A. Gordenin, David Haan, James E. Haber, Julian M. Hess, Barbara Hutter, Marcin Imieliński, David Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Jan O. Korbel, Kiran Kumar, Eunjung Alice Lee, Jake June-Koo Lee, Yilong Li, Andy G. Lynch, Geoff Macintyre, Florian Markowetz, Iñigo Martincorena, Alexander Martinez‐Fundichely, Satoru Miyano, Hidewaki Nakagawa, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Nicola D. Roberts, Steven A. Roberts, Bernardo Rodriguez-Martin, Steven E. Schumacher, Ralph Scully, Mark Shackleton, Nikos Sidiropoulos, Lina Sieverling, Chip Stewart, David Torrents, José M. C. Tubío, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Joachim Weischenfeldt, Lixing Yang, Xiaotong Yao, Sung-Soo Yoon, Jorge Zamora, Cheng-Zhong Zhang, Peter J. Park, Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams, Nishant Agrawal, Keun Soo Ahn, Sung‐Min Ahn, Hiroshi Aikata, Rehan Akbani, Kadir C. Akdemir, Hikmat Al‐Ahmadie, Sultan T. Al‐Sedairy, Fátima Al‐Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape and 1,307 more - Nature Genetics 2020 cited by 774
- Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines
Authors: Kyle Ellrott, Matthew H. Bailey, Gordon Saksena, Kyle R. Covington, Cyriac Kandoth, Chip Stewart, Julian M. Hess, Singer Ma, Kami Chiotti, Michael D. McLellan, Heidi J. Sofia, Carolyn Hutter, Gad Getz, David A. Wheeler, Li Ding, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Sam Meier, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael I. Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michaël Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia, Debyani Chakravarty, Walid K. Chatila, Ino de Bruijn, Galen F. Gao, Benjamin E. Gross, Zachary Heins, Ritika Kundra, Konnor La, Marc Ladanyi, Augustin Luna, Moriah G. Nissan, Angelica Ochoa, Sarah Phillips, Ed Reznik, Francisco Sánchez-Vega, Chris Sander, Nikolaus Schultz, Robert P. Sheridan, S. Onur Sumer and 640 more - Cell Systems 2018 cited by 942
- Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
Authors: Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel González-Pérez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Hong Chen, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Young-Wook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, José M. C. Tubío, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng‐Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imieliński, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Gary D. Bader, Pratiti Bandopadhayay, Jonathan Barenboim, Rameen Beroukhim, Johanna Bertl, Keith A. Boroevich, Søren Brunak, Peter J. Campbell and 1,521 more - Nature, Nat. 2020 cited by 671
- Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma
Authors: Marios Giannakis, Xinmeng Jasmine Mu, Sachet A. Shukla, Zhi Rong Qian, Ofir Cohen, Reiko Nishihara, Samira Bahl, Yin Cao, Ali Amin‐Mansour, Mai Yamauchi, Yasutaka Sukawa, Chip Stewart, Mara Rosenberg, Kosuke Mima, Kentaro Inamura, Katsuhiko Nosho, Jonathan A. Nowak, Michael S. Lawrence, Edward L. Giovannucci, Andrew T. Chan, Kimmie Ng, Jeffrey A. Meyerhardt, Eliezer M. Van Allen, Gad Getz, Stacey B. Gabriel, Eric S. Lander, Catherine J. Wu, Charles S. Fuchs, Shuji Ogino, Levi A. Garraway - Cell Reports 2016 cited by 930
- Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer
Authors: Arvind Ravi, Matthew D. Hellmann, Monica Arniella, Mark Holton, Samuel S. Freeman, Vivek Naranbhai, Chip Stewart, Ignaty Leshchiner, Jaegil Kim, Yo Akiyama, Aaron T. Griffin, Natalie I. Vokes, Mustafa Sakhi, Vashine Kamesan, Hira Rizvi, Biagio Ricciuti, Patrick M. Forde, Valsamo Anagnostou, Jonathan W. Riess, Don L. Gibbons, Nathan A. Pennell, Vamsidhar Velcheti, Subba R. Digumarthy, Mari Mino–Kenudson, Andrea Califano, John V. Heymach, Roy S. Herbst, Julie R. Brahmer, Kurt A. Schalper, Victor E. Velculescu, Brian S. Henick, Naiyer A. Rizvi, Pasi A. Jänne, Mark M. Awad, Andrew Chow, Benjamin D. Greenbaum, Marta Łuksza, Alice T. Shaw, Jedd D. Wolchok, Nir Hacohen, Gad Getz, Justin F. Gainor - Nature Genetics 2023 cited by 186
- Integrative Molecular Characterization of Malignant Pleural Mesothelioma
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- Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia
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