Travis Zack
Active 2012–2025
- 43
- Papers
- 19,965
- Citations
- 23
- h-index
- 32
- i10-index
Citations
Citation sources
Countries
Institutions
Fields
- Medicine47.3%
- Biochemistry, Genetics and Molecular Biology45.7%
- Immunology and Microbiology2.4%
- Computer Science2.2%
- Neuroscience0.5%
- Agricultural and Biological Sciences0.3%
- Other1.6%
Topics
- Cancer Genomics and Diagnostics7.3%
- Lung Cancer Treatments and Mutations4.3%
- Cancer Immunotherapy and Biomarkers3.8%
- Gastric Cancer Management and Outcomes3.6%
- RNA modifications and cancer3.1%
- Ferroptosis and cancer prognosis2.5%
- Other75.4%
Coauthors
- Atul J. Butte17
- Rameen Beroukhim13
- Madhumita Sushil10
- Brenda Y. Miao8
- Steven E. Schumacher8
- Christopher Y. K. Williams7
- Barbara A. Weir6
- Gad Getz6
- Aviad Tsherniak5
- Divneet Mandair5
- Scott L. Carter5
- Shenghuan Sun5
- David E. Root4
- Emily Alsentzer4
- Irene Y. Chen4
- Jill P. Mesirov4
- William C. Hahn4
- Andrew D. Cherniack3
- Diane D. Shao3
- Francisca Vázquez3
- Frank Dubois3
- Glenn S. Cowley3
- Hui Shen3
- Jeremiah A. Wala3
All papers
- Comprehensive molecular characterization of gastric adenocarcinoma
Authors: Adam J. Bass, Natalie Tasman, Brady Bernard, Vésteinn Thórsson, Roger Kramer, Michael Miller, Vésteinn Thórsson, Ilya Shmulevich, Lisa Iype, Hector Rovira, Richard Kreisberg, Sheila M. Reynolds, Timothy J. Triche, Peter W. Laird, Phillip H. Lai, Toshinori Hinoue, Hui Shen, Toshinori Hinoue, Daniel J. Weisenberger, David Van Den Berg, Peter W. Laird, Christina Curtis, Nikolaus Schultz, Jianjiong Gao, Nils Weinhold, Yasin Şenbabaoğlu, Rileen Sinha, Benjamin Gross, Benjamin Groß, Gideon Dresdner, Ricardo Ramírez, Chris Sander, S. Onur Sumer, Rileen Sinha, William Lee, Giovanni Ciriello, Yichao Sun, Nikolaus Schultz, Ronglai Shen, Yelena Y. Janjigian, David P. Kelsen, David P. Kelsen, Haiyan A. Li, Amanda Clarke, Noreen Dhalla, Andy Chu, Andrew J. Mungall, Justin Chu, Nina Thiessen, Karen Mungall, Emilia L. Lim, Denise Brooks, Reanne Bowlby, Miruna Balasundaram, Darlene Lee, Angela Tam, Richard A. Moore, Hye-Jung E. Chun, Michael Mayo, A. Gordon Robertson, Eric Chuah, Steven J.M. Jones, Rebecca Carlsen, Marco A. Marra, Marco A. Marra, Payal Sipahimalani, Yussanne Ma, Ranabir Guin, Robert A. Holt, Yaron S.N. Butterfield, Ka Ming Nip, Reanne Bowlby, Adrian Ally, Jacqueline E. Schein, İnanç Birol, Lihua Zou, Nils Gehlenborg, Yingchun Liu, Travis Zack, Scott L. Carter, Jaegil Kim, Eric S. Lander, Petar Stojanov, Barbara Tabak, Andrew D. Cherniack, Gordon Saksena, Bradley A. Murray, Rameen Beroukhim, Lee Lichtenstein, Carrie Sougnez, Gad Getz, Chandra Sekhar Pedamallu, Juok Cho, Kristian Cibulskis, David I. Heiman, Doug Voet, Joonil Jung, Sheila Fisher, Hailei Zhang, Scott Frazer and 158 more - Nature 2014 cited by 6,599
- Comprehensive molecular profiling of lung adenocarcinoma
Authors: Eric A. Collisson, Barry S. Taylor, Joshua D. Campbell, Angela N. Brooks, Alice H. Berger, Juliann Chmielecki, Gad Getz, Peter S. Hammerman, Bryan Hernandez, Carrie Sougnez, Andrew D. Cherniack, Mara Rosenberg, Matthew Meyerson, Stacey B. Gabriel, Kristian Cibulskis, Jaegil Kim, Chip Stewart, Lee Lichtenstein, Eric S. Lander, Michael S. Lawrence, Marcin Imielinski, Robert C. Onofrio, Travis Zack, Elena Helman, Chandra Sekhar Pedamallu, Jill Mesirov, Gordon Saksena, Steven E. Schumacher, Scott L. Carter, Levi Garraway, Rameen Beroukhim, Juok Cho, Daniel DiCara, David Heiman, Pei Lin, William Mallard, Douglas Voet, Hailei Zhang, Lihua Zou, Michael S. Noble, Nils Gehlenborg, Helga Thorvaldsdottir, Marc-Danie Nazaire, Jim Robinson, William Lee, Marc Ladanyi, Nikolaus Schultz, Ronglai Shen, William D. Travis, B. Arman Aksoy, Giovanni Ciriello, Gideon Dresdner, Jianjiong Gao, Benjamin Gross, Venkatraman E. Seshan, Boris Reva, Rileen Sinha, S. Onur Sumer, Nils Weinhold, Chris Sander, Natasha Rekhtman, Maureen Zakowski, Valerie W. Rusch, David G. Beer, Leslie Cope, Ludmila Danilova, James G. Herman, Stephen B. Baylin, Peter Illei, Edward Gabrielson, James Shin, Beverly Lee, Kristen Rodgers, Dante Trusty, Malcolm V. Brock, Chad J. Creighton, David Wheeler, Li Ding, Ramaswamy Govindan, Cyriac Kandoth, Robert Fulton, Lucinda L. Fulton, Michael D. McLellan, Richard K. Wilson, Kai Ye, Catrina C. Fronick, Christopher A. Maher, Christopher A. Miller, Michael C. Wendl, Christopher Cabanski, Elaine Mardis, Mark A. Watson, Sandra McDonald, Bryan Meyers, Raju Kucherlapati, Angela Hadjipanayis, Eran Hodis, Semin Lee, Angeliki Pantazi, Xiaojia Ren and 210 more - Nature 2014 cited by 5,918
- Assessing the potential of GPT-4 to perpetuate racial and gender biases in health care: a model evaluation study
Authors: Travis Zack, Eric Lehman, Mirac Süzgün, Jorge A. Rodriguez, Leo Anthony Celi, Judy Wawira Gichoya, Dan Jurafsky, Peter Szolovits, David W. Bates, Raja-Elie E. Abdulnour, Atul J. Butte, Emily Alsentzer - The Lancet Digital Health 2023 cited by 454
- Absolute quantification of somatic DNA alterations in human cancer
Authors: Scott L. Carter, Kristian Cibulskis, Elena Helman, Aaron McKenna, Hui Shen, Travis Zack, Peter W. Laird, Robert C. Onofrio, Wendy Winckler, Barbara A. Weir, Rameen Beroukhim, David Pellman, Douglas A. Levine, Eric S. Lander, Matthew Meyerson, Gad Getz - Nature Biotechnology 2012 cited by 2,219
- Pan-cancer patterns of somatic copy number alteration
Authors: Travis Zack, Steven E. Schumacher, Scott L. Carter, Andrew D. Cherniack, Gordon Saksena, Barbara Tabak, Michael S. Lawrence, Cheng‐Zhong Zhang, Jeremiah A. Wala, Craig H. Mermel, Carrie Sougnez, Stacey Gabriel, Bryan Hernandez, Hui Shen, Peter W. Laird, Gad Getz, Matthew Meyerson, Rameen Beroukhim - Nature Genetics 2013 cited by 2,014
- Use of a Large Language Model to Assess Clinical Acuity of Adults in the Emergency Department
Authors: Christopher Y. K. Williams, Travis Zack, Brenda Y. Miao, Madhumita Sushil, Michelle Wang, Aaron E. Kornblith, Atul J. Butte - JAMA Network Open 2024 cited by 136
- β-Catenin-Driven Cancers Require a YAP1 Transcriptional Complex for Survival and Tumorigenesis
Authors: Joseph Rosenbluh, Deepak Nijhawan, Andrew G. Cox, Xingnan Li, James T. Neal, Eric J. Schafer, Travis Zack, Xiaoxing Wang, Aviad Tsherniak, Anna C. Schinzel, Diane D. Shao, Steven E. Schumacher, Barbara A. Weir, Francisca Vázquez, Glenn S. Cowley, David E. Root, Jill P. Mesirov, Rameen Beroukhim, Calvin J. Kuo, Wolfram Goessling, William C. Hahn - Cell 2012 cited by 772
- CORAL: Expert-Curated Oncology Reports to Advance Language Model Inference
Authors: Madhumita Sushil, Vanessa E. Kennedy, Divneet Mandair, Brenda Y. Miao, Travis Zack, Atul J. Butte - NEJM AI 2024 cited by 56
- Coding Inequity: Assessing GPT-4’s Potential for Perpetuating Racial and Gender Biases in Healthcare
Authors: Travis Zack, Eric Lehman, Mirac Süzgün, Jorge A. Rodriguez, Leo Anthony Celi, Judy Wawira Gichoya, Dan Jurafsky, Peter Szolovits, David W. Bates, Raja-Elie E. Abdulnour, Atul J. Butte, Emily Alsentzer - medRxiv 2023 cited by 30
- Medical Large Language Model Benchmarks Should Prioritize Construct Validity
Authors: Ahmed M. Alaa, Thomas Hartvigsen, Niloufar Golchini, Shiladitya Dutta, Frances Dean, Inioluwa Deborah Raji, Travis Zack - ArXiv.org, CoRR 2025 cited by 18
- ER-REASON: A Benchmark Dataset for LLM-Based Clinical Reasoning in the Emergency Room
Authors: Nikita Mehandru, Niloufar Golchini, David Bamman, Travis Zack, Melanie F. Molina, Ahmed M. Alaa, Travis Zack, McCoy, Liam G., Rodman, Adam, David Bamman, Melanie F. Molina, Ahmed M. Alaa - ArXiv.org, CoRR 2025 cited by 14
- The genomic landscape and evolution of endometrial carcinoma progression and abdominopelvic metastasis
Authors: William J. Gibson, Erling A. Høivik, Mari K. Halle, Amaro Taylor‐Weiner, Andrew D. Cherniack, Anna Berg, Frederik Holst, Travis Zack, Henrica M.J. Werner, Kjersti Mangseth Staby, Mara Rosenberg, Ingunn M. Stefansson, Kanthida Kusonmano, Aaron Chevalier, Karen K. Mauland, Jone Trovik, Camilla Krakstad, Marios Giannakis, Eran Hodis, Kathrine Woie, Line Bjørge, Olav Karsten Vintermyr, Jeremiah A. Wala, Michael S. Lawrence, Gad Getz, Scott L. Carter, Rameen Beroukhim, Helga B. Salvesen - Nature Genetics 2016 cited by 205
- Genomic evolution and chemoresistance in germ-cell tumours
Authors: Amaro Taylor‐Weiner, Travis Zack, Elizabeth O’Donnell, Jennifer L. Guerriero, Brandon Bernard, Anita Reddy, G. Celine Han, Saud H. AlDubayan, Ali Amin‐Mansour, Steven E. Schumacher, Kevin Litchfield, Clare Turnbull, Stacey Gabriel, Rameen Beroukhim, Gad Getz, Scott L. Carter, Michelle S. Hirsch, Anthony Letai, Christopher J. Sweeney, Eliezer M. Van Allen - Nature 2016 cited by 170
- Cancer Vulnerabilities Unveiled by Genomic Loss
Authors: Deepak Nijhawan, Travis Zack, Yin Ren, Matthew R. Strickland, Rebecca Lamothe, Steven E. Schumacher, Aviad Tsherniak, Henrike C. Besche, Joseph Rosenbluh, Shyemaa Shehata, Glenn S. Cowley, Barbara A. Weir, Alfred L. Goldberg, Jill P. Mesirov, David E. Root, Sangeeta N. Bhatia, Rameen Beroukhim, William C. Hahn - Cell 2012 cited by 240
- PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
Authors: Prasidda Khadka, Zachary J. Reitman, Sophie D. Lu, Graham Buchan, Gabrielle Gionet, Frank Dubois, Diana Carvalho, Juliann Shih, Shu Zhang, Noah F. Greenwald, Travis Zack, Ofer Shapira, Kristine Pelton, Rachel Hartley, Heather Bear, Yohanna Georgis, Spandana Jarmale, Randy Melanson, Kevin Bonanno, Kathleen Schoolcraft, Peter G. Miller, Alexandra L. Condurat, Elizabeth M. Gonzalez, Kenin Qian, Eric Morin, Jaldeep Langhnoja, Leslie Lupien, Verónica Rendo, Jeromy J. Digiacomo, Dayle K. Wang, Kevin N. Zhou, Rushil Kumbhani, María E. Guerra García, Claire Sinai, Sarah Becker, Rachel Schneider, Jayne Vogelzang, Karsten Krug, Amy Goodale, Tanaz Abid, Zohra Kalani, Federica Piccioni, Rameen Beroukhim, Nicole S. Persky, David E. Root, Ángel M. Carcaboso, Benjamin L. Ebert, Christine Fuller, Özgün Babur, Mark W. Kieran, Chris Jones, Hasmik Keshishian, Keith L. Ligon, Steven A. Carr, Timothy N. Phoenix, Pratiti Bandopadhayay - Nature Communications 2022 cited by 58
- Structural variants shape driver combinations and outcomes in pediatric high-grade glioma
Authors: Frank Dubois, Ofer Shapira, Noah F. Greenwald, Travis Zack, Jeremiah A. Wala, Jessica W. Tsai, Alexander Crane, Audrey Baguette, Djihad Hadjadj, Ashot S. Harutyunyan, Kiran Kumar, Mirjam Blattner-Johnson, Jayne Vogelzang, Cecília Almeida e Sousa, Kyung Shin Kang, Claire Sinai, Dayle K. Wang, Prasidda Khadka, Kathleen Lewis, Lan Nguyễn, Hayley Malkin, Patricia Ho, Ryan O’Rourke, Shu Zhang, Rose Gold, Davy Deng, Jonathan Serrano, Matija Snuderl, Chris Jones, Karen Wright, Susan Chi, Jacques Grill, Claudia L. Kleinman, Liliana Goumnerova, Nada Jabado, David Jones, Mark W. Kieran, Keith L. Ligon, Rameen Beroukhim, Pratiti Bandopadhayay - Nature Cancer 2022 cited by 48
- Systematic screening reveals a role for BRCA1 in the response to transcription-associated DNA damage
Authors: Sarah J. Hill, Thomas Rolland, Guillaume Adelmant, Xianfang Xia, Matthew Owen, Amélie Dricot, Travis Zack, Nidhi Sahni, Yves Jacob, Tong Hao, Kristine McKinney, Allison Clark, Deepak Reyon, Shengdar Q. Tsai, J. Keith Joung, Rameen Beroukhim, Jarrod A. Marto, Marc Vidal, Suzanne Gaudet, David E. Hill, David M. Livingston - Genes & Development 2014 cited by 98
- Topic modeling on clinical social work notes for exploring social determinants of health factors
Authors: Shenghuan Sun, Travis Zack, Christopher Y. K. Williams, Madhumita Sushil, Atul J. Butte - JAMIA Open 2024 cited by 25
- The MI-CLAIM-GEN checklist for generative artificial intelligence in health
Authors: Brenda Y. Miao, Irene Y. Chen, Christopher Y. K. Williams, Jaysón Davidson, Augusto García-Agúndez, Shenghuan Sun, Travis Zack, Suchi Saria, Rima Arnaout, Giorgio Quer, Hossein Javedani Sadaei, Ali Torkamani, Brett K. Beaulieu‐Jones, Bin Yu, Milena Gianfrancesco, Atul J. Butte, Beau Norgeot, Madhumita Sushil - Nature Medicine 2025 cited by 16
- Identifying Reasons for Contraceptive Switching from Real-World Data Using Large Language Models
Authors: Brenda Y. Miao, Christopher Y. K. Williams, Ebenezer Chinedu-Eneh, Travis Zack, Emily Alsentzer, Atul J. Butte, Irene Y. Chen - arXiv (Cornell University), CoRR 2024 cited by 8
- Pan-cancer genetic analysis identifies PARK2 as a master regulator of G1/S cyclins
Authors: Yongxing Gong, Travis Zack, Luc G.T. Morris, Kan Lin, Ellen Hukkelhoven, Radhika Raheja, I‐Li Tan, Şevin Turcan, Selvaraju Veeriah, Shasha Meng, Agnès Viale, Steven E. Schumacher, Perry Palmedo, Rameen Beroukhim, Timothy A. Chan - Nature Genetics 2014 cited by 174
- Characterizing genomic alterations in cancer by complementary functional associations
Authors: Jong Wook Kim, Olga Botvinnik, Omar Abudayyeh, Chet Birger, Joseph Rosenbluh, Yashaswi Shrestha, Mohamed E. Abazeed, Peter S. Hammerman, Daniel DiCara, David J. Konieczkowski, Cory M. Johannessen, Arthur Liberzon, Amir Reza Alizad-Rahvar, Gabriela Alexe, Andrew J. Aguirre, Mahmoud Ghandi, Heidi Greulich, Francisca Vázquez, Barbara A. Weir, Eliezer M. Van Allen, Aviad Tsherniak, Diane D. Shao, Travis Zack, Michael S. Noble, Gad Getz, Rameen Beroukhim, Levi A. Garraway, Masoud Ardakani, Chiara Romualdi, Gabriele Sales, David A. Barbie, Jesse S. Boehm, William C. Hahn, Jill P. Mesirov, Pablo Tamayo - Nature Biotechnology 2016 cited by 111
- Extracting detailed oncologic history and treatment plan from medical oncology notes with large language models
Authors: Madhumita Sushil, Vanessa E. Kennedy, Brenda Y. Miao, Divneet Mandair, Travis Zack, Atul J. Butte - arXiv (Cornell University), CoRR 2023 cited by 7
- Copy-number and gene dependency analysis reveals partial copy loss of wild-type SF3B1 as a novel cancer vulnerability
Authors: Brenton R. Paolella, William J. Gibson, Laura M. Urbanski, John A. Alberta, Travis Zack, Pratiti Bandopadhayay, Caitlin A. Nichols, Pankaj K. Agarwalla, Meredith S. Brown, Rebecca Lamothe, Yong Yu, Peter S. Choi, Esther A. Obeng, Dirk Heckl, Guo Wei, Belinda Wang, Aviad Tsherniak, Francisca Vázquez, Barbara A. Weir, David E. Root, Glenn S. Cowley, Sara J. Buhrlage, Charles D. Stiles, Benjamin L. Ebert, William C. Hahn, Robin Reed, Rameen Beroukhim - eLife 2017 cited by 84
